CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 177 | M177I | nonsyn | atG | atA | 8044 | 3337 | 0.414843 | 22091-22093 | |
S | 177 | M177I | nonsyn | atG | atT | 8044 | 2509 | 0.311909 | 22091-22093 | |
S | 177 | M177I | nonsyn | atG | atC | 8044 | 2198 | 0.273247 | 22091-22093 |
Details of the mutation M177I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 177 | M177I | atG | atA | 3337 | 8044 | All | 0.000638 |
S | 177 | M177I | atG | atT | 2509 | 8044 | All | 0.00048 |
S | 177 | M177I | atG | atC | 2198 | 8044 | All | 0.00042 |
S | 177 | M177I | atG | atA | 2659 | 2694 | AY.3 | 0.026447 |
S | 177 | M177I | atG | atC | 19 | 2694 | AY.3 | 0.000189 |
S | 177 | M177I | atG | atT | 16 | 2694 | AY.3 | 0.000159 |
S | 177 | M177I | atG | atT | 1204 | 1209 | AY.26 | 0.034085 |
S | 177 | M177I | atG | atC | 4 | 1209 | AY.26 | 0.000113 |
S | 177 | M177I | atG | atA | 1 | 1209 | AY.26 | 0.000028 |
S | 177 | M177I | atG | atC | 620 | 1007 | B.1.1.7 | 0.000555 |
S | 177 | M177I | atG | atT | 296 | 1007 | B.1.1.7 | 0.000265 |
S | 177 | M177I | atG | atA | 91 | 1007 | B.1.1.7 | 0.000081 |
S | 177 | M177I | atG | atT | 145 | 293 | AY.25 | 0.000872 |
S | 177 | M177I | atG | atA | 139 | 293 | AY.25 | 0.000836 |
S | 177 | M177I | atG | atC | 9 | 293 | AY.25 | 0.000054 |
S | 177 | M177I | atG | atC | 140 | 278 | AY.4 | 0.000218 |
S | 177 | M177I | atG | atT | 105 | 278 | AY.4 | 0.000163 |
S | 177 | M177I | atG | atA | 33 | 278 | AY.4 | 0.000051 |
S | 177 | M177I | atG | atC | 173 | 270 | B.1.2 | 0.001523 |
S | 177 | M177I | atG | atT | 80 | 270 | B.1.2 | 0.000704 |
S | 177 | M177I | atG | atA | 17 | 270 | B.1.2 | 0.00015 |
S | 177 | M177I | atG | atC | 230 | 231 | B.1.596 | 0.020042 |
S | 177 | M177I | atG | atT | 1 | 231 | B.1.596 | 0.000087 |
S | 177 | M177I | atG | atC | 110 | 226 | B.1.617.2 | 0.000414 |
S | 177 | M177I | atG | atA | 93 | 226 | B.1.617.2 | 0.00035 |
S | 177 | M177I | atG | atT | 23 | 226 | B.1.617.2 | 0.000087 |
S | 177 | M177I | atG | atT | 152 | 154 | AY.6 | 0.006252 |
S | 177 | M177I | atG | atC | 1 | 154 | AY.6 | 0.000041 |
S | 177 | M177I | atG | atA | 1 | 154 | AY.6 | 0.000041 |
S | 177 | M177I | atG | atT | 88 | 150 | AY.44 | 0.000536 |
S | 177 | M177I | atG | atC | 52 | 150 | AY.44 | 0.000317 |
S | 177 | M177I | atG | atA | 10 | 150 | AY.44 | 0.000061 |
S | 177 | M177I | atG | atC | 146 | 146 | Q.3 | 0.021175 |
S | 177 | M177I | atG | atC | 129 | 129 | AY.22 | 0.269874 |
S | 177 | M177I | atG | atC | 80 | 82 | B.1.621 | 0.007082 |
S | 177 | M177I | atG | atT | 2 | 82 | B.1.621 | 0.000177 |
S | 177 | M177I | atG | atT | 62 | 77 | AY.103 | 0.000385 |
S | 177 | M177I | atG | atC | 12 | 77 | AY.103 | 0.000075 |
S | 177 | M177I | atG | atA | 3 | 77 | AY.103 | 0.000019 |
S | 177 | M177I | atG | atC | 66 | 68 | AY.100 | 0.003036 |
S | 177 | M177I | atG | atA | 1 | 68 | AY.100 | 0.000046 |
S | 177 | M177I | atG | atT | 1 | 68 | AY.100 | 0.000046 |
S | 177 | M177I | atG | atT | 60 | 64 | AY.4.2 | 0.001301 |
S | 177 | M177I | atG | atC | 4 | 64 | AY.4.2 | 0.000087 |
S | 177 | M177I | atG | atC | 59 | 60 | B.1.177 | 0.000777 |
S | 177 | M177I | atG | atT | 1 | 60 | B.1.177 | 0.000013 |
S | 177 | M177I | atG | atT | 22 | 39 | AY.43 | 0.000097 |
S | 177 | M177I | atG | atC | 9 | 39 | AY.43 | 0.00004 |
S | 177 | M177I | atG | atA | 8 | 39 | AY.43 | 0.000035 |
S | 177 | M177I | atG | atC | 28 | 37 | B.1 | 0.000256 |
S | 177 | M177I | atG | atT | 8 | 37 | B.1 | 0.000073 |
S | 177 | M177I | atG | atA | 1 | 37 | B.1 | 0.000009 |
S | 177 | M177I | atG | atA | 14 | 36 | AY.102 | 0.000371 |
S | 177 | M177I | atG | atC | 13 | 36 | AY.102 | 0.000345 |
S | 177 | M177I | atG | atT | 9 | 36 | AY.102 | 0.000239 |
S | 177 | M177I | atG | atA | 35 | 35 | B.1.258.15 | 0.660377 |
S | 177 | M177I | atG | atA | 28 | 28 | B.1.1.168 | 0.736842 |
S | 177 | M177I | atG | atC | 23 | 28 | B.1.526 | 0.000541 |
S | 177 | M177I | atG | atT | 4 | 28 | B.1.526 | 0.000094 |
S | 177 | M177I | atG | atA | 1 | 28 | B.1.526 | 0.000024 |
S | 177 | M177I | atG | atT | 14 | 28 | P.1 | 0.000221 |
S | 177 | M177I | atG | atA | 8 | 28 | P.1 | 0.000126 |
S | 177 | M177I | atG | atC | 6 | 28 | P.1 | 0.000095 |
S | 177 | M177I | atG | atC | 17 | 24 | AY.113 | 0.002421 |
S | 177 | M177I | atG | atT | 7 | 24 | AY.113 | 0.000997 |
S | 177 | M177I | atG | atT | 23 | 23 | B.1.131 | 0.201754 |
S | 177 | M177I | atG | atA | 17 | 18 | AY.92 | 0.004884 |
S | 177 | M177I | atG | atT | 1 | 18 | AY.92 | 0.000287 |
S | 177 | M177I | atG | atC | 12 | 17 | P.1.15 | 0.002788 |
S | 177 | M177I | atG | atA | 5 | 17 | P.1.15 | 0.001162 |
S | 177 | M177I | atG | atA | 8 | 15 | B.1.1 | 0.000145 |
S | 177 | M177I | atG | atC | 5 | 15 | B.1.1 | 0.000091 |
S | 177 | M177I | atG | atT | 2 | 15 | B.1.1 | 0.000036 |
S | 177 | M177I | atG | atT | 15 | 15 | B.1.305 | 0.032258 |
S | 177 | M177I | atG | atC | 14 | 14 | AZ.3 | 0.021277 |
S | 177 | M177I | atG | atA | 12 | 14 | P.1.1 | 0.003812 |
S | 177 | M177I | atG | atT | 2 | 14 | P.1.1 | 0.000635 |
S | 177 | M177I | atG | atT | 8 | 13 | B.1.429 | 0.000188 |
S | 177 | M177I | atG | atC | 5 | 13 | B.1.429 | 0.000118 |
S | 177 | M177I | atG | atA | 9 | 12 | AY.117 | 0.000761 |
S | 177 | M177I | atG | atC | 3 | 12 | AY.117 | 0.000254 |
S | 177 | M177I | atG | atA | 9 | 12 | AY.119 | 0.000318 |
S | 177 | M177I | atG | atC | 2 | 12 | AY.119 | 0.000071 |
S | 177 | M177I | atG | atT | 1 | 12 | AY.119 | 0.000035 |
S | 177 | M177I | atG | atA | 6 | 12 | B.1.160 | 0.000187 |
S | 177 | M177I | atG | atT | 6 | 12 | B.1.160 | 0.000187 |
S | 177 | M177I | atG | atC | 12 | 12 | Q.1 | 0.001516 |
S | 177 | M177I | atG | atA | 10 | 11 | AY.34 | 0.00097 |
S | 177 | M177I | atG | atC | 1 | 11 | AY.34 | 0.000097 |
S | 177 | M177I | atG | atT | 7 | 11 | AY.39 | 0.000173 |
S | 177 | M177I | atG | atC | 3 | 11 | AY.39 | 0.000074 |
S | 177 | M177I | atG | atA | 1 | 11 | AY.39 | 0.000025 |
S | 177 | M177I | atG | atA | 10 | 11 | AY.84 | 0.004374 |
S | 177 | M177I | atG | atT | 1 | 11 | AY.84 | 0.000437 |
S | 177 | M177I | atG | atC | 8 | 11 | AY.98.1 | 0.000387 |
S | 177 | M177I | atG | atT | 3 | 11 | AY.98.1 | 0.000145 |
S | 177 | M177I | atG | atT | 9 | 11 | B.1.1.243 | 0.036735 |
S | 177 | M177I | atG | atC | 2 | 11 | B.1.1.243 | 0.008163 |
S | 177 | M177I | atG | atA | 5 | 10 | AY.29 | 0.000079 |
S | 177 | M177I | atG | atC | 5 | 10 | AY.29 | 0.000079 |
S | 177 | M177I | atG | atT | 4 | 10 | AY.5 | 0.000083 |
S | 177 | M177I | atG | atA | 4 | 10 | AY.5 | 0.000083 |
S | 177 | M177I | atG | atC | 2 | 10 | AY.5 | 0.000041 |
S | 177 | M177I | atG | atC | 6 | 10 | B.1.243 | 0.000418 |
S | 177 | M177I | atG | atT | 4 | 10 | B.1.243 | 0.000278 |
S | 177 | M177I | atG | atA | 10 | 10 | B.1.277 | 0.238095 |
S | 177 | M177I | atG | atA | 9 | 9 | AY.53 | 0.002588 |
S | 177 | M177I | atG | atC | 7 | 9 | B | 0.000895 |
S | 177 | M177I | atG | atA | 1 | 9 | B | 0.000128 |
S | 177 | M177I | atG | atT | 1 | 9 | B | 0.000128 |
S | 177 | M177I | atG | atC | 5 | 9 | B.1.258 | 0.000333 |
S | 177 | M177I | atG | atT | 4 | 9 | B.1.258 | 0.000266 |
S | 177 | M177I | atG | atT | 5 | 9 | B.1.351 | 0.000149 |
S | 177 | M177I | atG | atC | 4 | 9 | B.1.351 | 0.000119 |
S | 177 | M177I | atG | atA | 4 | 8 | AY.42 | 0.000161 |
S | 177 | M177I | atG | atT | 3 | 8 | AY.42 | 0.000121 |
S | 177 | M177I | atG | atC | 1 | 8 | AY.42 | 0.00004 |
S | 177 | M177I | atG | atC | 7 | 8 | B.1.221 | 0.000497 |
S | 177 | M177I | atG | atT | 1 | 8 | B.1.221 | 0.000071 |
S | 177 | M177I | atG | atT | 8 | 8 | P.1.16 | 0.002993 |
S | 177 | M177I | atG | atA | 3 | 7 | AY.13 | 0.000483 |
S | 177 | M177I | atG | atC | 2 | 7 | AY.13 | 0.000322 |
S | 177 | M177I | atG | atT | 2 | 7 | AY.13 | 0.000322 |
S | 177 | M177I | atG | atT | 3 | 7 | AY.20 | 0.000117 |
S | 177 | M177I | atG | atC | 3 | 7 | AY.20 | 0.000117 |
S | 177 | M177I | atG | atA | 1 | 7 | AY.20 | 0.000039 |
S | 177 | M177I | atG | atA | 6 | 6 | AY.105 | 0.003859 |
S | 177 | M177I | atG | atA | 4 | 6 | AY.47 | 0.000124 |
S | 177 | M177I | atG | atT | 2 | 6 | AY.47 | 0.000062 |
S | 177 | M177I | atG | atA | 6 | 6 | AY.57 | 0.003937 |
S | 177 | M177I | atG | atC | 5 | 6 | B.1.1.519 | 0.000199 |
S | 177 | M177I | atG | atT | 1 | 6 | B.1.1.519 | 0.00004 |
S | 177 | M177I | atG | atC | 6 | 6 | B.1.177.20 | 0.009105 |
S | 177 | M177I | atG | atC | 6 | 6 | B.1.349 | 0.004289 |
S | 177 | M177I | atG | atC | 4 | 6 | P.1.14 | 0.000191 |
S | 177 | M177I | atG | atA | 2 | 6 | P.1.14 | 0.000096 |
S | 177 | M177I | atG | atA | 4 | 5 | AY.23 | 0.000279 |
S | 177 | M177I | atG | atT | 1 | 5 | AY.23 | 0.00007 |
S | 177 | M177I | atG | atC | 5 | 5 | AY.46.6 | 0.000361 |
S | 177 | M177I | atG | atC | 5 | 5 | B.1.1.170 | 0.006234 |
S | 177 | M177I | atG | atT | 3 | 5 | B.40 | 0.001093 |
S | 177 | M177I | atG | atA | 2 | 5 | B.40 | 0.000729 |
S | 177 | M177I | atG | atA | 5 | 5 | C.36.3 | 0.002836 |
S | 177 | M177I | atG | atT | 4 | 5 | D.2 | 0.0003 |
S | 177 | M177I | atG | atA | 1 | 5 | D.2 | 0.000075 |
S | 177 | M177I | atG | atT | 2 | 4 | 0.111111 | |
S | 177 | M177I | atG | atC | 2 | 4 | 0.111111 | |
S | 177 | M177I | atG | atC | 4 | 4 | AY.14 | 0.000352 |
S | 177 | M177I | atG | atA | 2 | 4 | AY.27 | 0.000129 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.27 | 0.000065 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.27 | 0.000065 |
S | 177 | M177I | atG | atT | 2 | 4 | AY.45 | 0.000243 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.45 | 0.000122 |
S | 177 | M177I | atG | atA | 1 | 4 | AY.45 | 0.000122 |
S | 177 | M177I | atG | atA | 2 | 4 | AY.61 | 0.00021 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.61 | 0.000105 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.61 | 0.000105 |
S | 177 | M177I | atG | atC | 3 | 4 | AY.9 | 0.000203 |
S | 177 | M177I | atG | atT | 1 | 4 | AY.9 | 0.000068 |
S | 177 | M177I | atG | atA | 3 | 4 | AY.91 | 0.002191 |
S | 177 | M177I | atG | atC | 1 | 4 | AY.91 | 0.00073 |
S | 177 | M177I | atG | atT | 4 | 4 | B.1.1.219 | 0.02 |
S | 177 | M177I | atG | atC | 4 | 4 | B.1.177.17 | 0.003284 |
S | 177 | M177I | atG | atA | 4 | 4 | B.1.177.69 | 0.005935 |
S | 177 | M177I | atG | atC | 4 | 4 | B.1.367 | 0.00317 |
S | 177 | M177I | atG | atT | 4 | 4 | B.1.404 | 0.005208 |
S | 177 | M177I | atG | atT | 2 | 4 | B.1.525 | 0.000226 |
S | 177 | M177I | atG | atC | 2 | 4 | B.1.525 | 0.000226 |
S | 177 | M177I | atG | atT | 2 | 4 | Q.8 | 0.00033 |
S | 177 | M177I | atG | atA | 2 | 4 | Q.8 | 0.00033 |
S | 177 | M177I | atG | atT | 2 | 3 | AE.8 | 0.000978 |
S | 177 | M177I | atG | atC | 1 | 3 | AE.8 | 0.000489 |
S | 177 | M177I | atG | atT | 3 | 3 | AY.104 | 0.005952 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.39.1 | 0.000119 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.46 | 0.000312 |
S | 177 | M177I | atG | atC | 3 | 3 | AY.68 | 0.000821 |
S | 177 | M177I | atG | atA | 2 | 3 | AY.88 | 0.001768 |
S | 177 | M177I | atG | atC | 1 | 3 | AY.88 | 0.000884 |
S | 177 | M177I | atG | atT | 2 | 3 | B.1.1.1 | 0.000653 |
S | 177 | M177I | atG | atC | 1 | 3 | B.1.1.1 | 0.000327 |
S | 177 | M177I | atG | atT | 2 | 3 | B.1.177.4 | 0.000422 |
S | 177 | M177I | atG | atA | 1 | 3 | B.1.177.4 | 0.000211 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.234 | 0.000264 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.234 | 0.000132 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.397 | 0.009709 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.397 | 0.004854 |
S | 177 | M177I | atG | atC | 2 | 3 | B.1.595 | 0.000522 |
S | 177 | M177I | atG | atT | 1 | 3 | B.1.595 | 0.000261 |
S | 177 | M177I | atG | atT | 3 | 3 | C.37 | 0.000348 |
S | 177 | M177I | atG | atT | 3 | 3 | C.6 | 0.111111 |
S | 177 | M177I | atG | atT | 2 | 2 | A.2.5 | 0.000998 |
S | 177 | M177I | atG | atA | 2 | 2 | AY.118 | 0.000125 |
S | 177 | M177I | atG | atT | 2 | 2 | AY.121 | 0.000271 |
S | 177 | M177I | atG | atC | 1 | 2 | AY.23.1 | 0.000417 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.23.1 | 0.000417 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.33 | 0.000134 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.5.3 | 0.000337 |
S | 177 | M177I | atG | atA | 1 | 2 | AY.5.3 | 0.000337 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.69 | 0.000373 |
S | 177 | M177I | atG | atC | 2 | 2 | AY.75 | 0.000112 |
S | 177 | M177I | atG | atT | 2 | 2 | AY.75.1 | 0.000361 |
S | 177 | M177I | atG | atT | 1 | 2 | AY.93 | 0.000273 |
S | 177 | M177I | atG | atA | 1 | 2 | AY.93 | 0.000273 |
S | 177 | M177I | atG | atA | 2 | 2 | AY.96 | 0.004149 |
S | 177 | M177I | atG | atC | 2 | 2 | AZ.5 | 0.007018 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.1.128 | 0.014184 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.216 | 0.001781 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.241 | 0.004141 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.25 | 0.001137 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.1.318 | 0.000302 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.1.318 | 0.000302 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.1.329 | 0.007692 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.1.413 | 0.013793 |
S | 177 | M177I | atG | atT | 2 | 2 | B.1.177.55 | 0.004662 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.177.82 | 0.000955 |
S | 177 | M177I | atG | atA | 2 | 2 | B.1.36.18 | 0.00084 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.420 | 0.010417 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.420 | 0.010417 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.427 | 0.00005 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.427 | 0.00005 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.466.2 | 0.000391 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.466.2 | 0.000391 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.580 | 0.00813 |
S | 177 | M177I | atG | atC | 2 | 2 | B.1.617.1 | 0.000258 |
S | 177 | M177I | atG | atT | 1 | 2 | B.1.623 | 0.000536 |
S | 177 | M177I | atG | atC | 1 | 2 | B.1.623 | 0.000536 |
S | 177 | M177I | atG | atT | 2 | 2 | B.4.2 | 0.133333 |
S | 177 | M177I | atG | atC | 1 | 2 | N.5 | 0.001767 |
S | 177 | M177I | atG | atA | 1 | 2 | N.5 | 0.001767 |
S | 177 | M177I | atG | atC | 1 | 2 | P.1.17 | 0.000162 |
S | 177 | M177I | atG | atT | 1 | 2 | P.1.17 | 0.000162 |
S | 177 | M177I | atG | atT | 1 | 2 | P.2 | 0.000187 |
S | 177 | M177I | atG | atA | 1 | 2 | P.2 | 0.000187 |
S | 177 | M177I | atG | atC | 1 | 2 | Q.4 | 0.000455 |
S | 177 | M177I | atG | atT | 1 | 2 | Q.4 | 0.000455 |
S | 177 | M177I | atG | atT | 1 | 1 | A.18 | 0.05 |
S | 177 | M177I | atG | atA | 1 | 1 | A.3 | 0.002096 |
S | 177 | M177I | atG | atC | 1 | 1 | AD.2 | 0.000219 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.101 | 0.00049 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.111 | 0.000183 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.120 | 0.000037 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.120.1 | 0.000321 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.3.1 | 0.000085 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.30 | 0.000396 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.36 | 0.000148 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.38 | 0.000499 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.46.4 | 0.000165 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.48 | 0.000465 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.55 | 0.000917 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.60 | 0.000938 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.62 | 0.000436 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.64 | 0.000595 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.67 | 0.000464 |
S | 177 | M177I | atG | atT | 1 | 1 | AY.7.2 | 0.000559 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.70 | 0.000209 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.9.2 | 0.000037 |
S | 177 | M177I | atG | atA | 1 | 1 | AY.98 | 0.000079 |
S | 177 | M177I | atG | atC | 1 | 1 | AY.99.2 | 0.000092 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.157 | 0.000913 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.201 | 0.02439 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.1.207 | 0.001182 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.218 | 0.007692 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.222 | 0.000204 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.28 | 0.000311 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.326 | 0.001761 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.391 | 0.008547 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.1.432 | 0.001266 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.1.44 | 0.00241 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.111 | 0.001175 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.147 | 0.000756 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.10 | 0.000878 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.65 | 0.000665 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.73 | 0.000566 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.177.74 | 0.015152 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.214.2 | 0.0006 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.237 | 0.004975 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.240 | 0.000216 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.258.14 | 0.00098 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.294 | 0.032258 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.338 | 0.008621 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.36 | 0.000146 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.29 | 0.000517 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.36.8 | 0.001 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.360 | 0.012658 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.380 | 0.006623 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.398 | 0.002976 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.415 | 0.014286 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.438.1 | 0.000107 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.517 | 0.000427 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.565 | 0.00081 |
S | 177 | M177I | atG | atT | 1 | 1 | B.1.581 | 0.009434 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.582 | 0.000491 |
S | 177 | M177I | atG | atC | 1 | 1 | B.1.609 | 0.000479 |
S | 177 | M177I | atG | atA | 1 | 1 | B.1.637 | 0.000073 |
S | 177 | M177I | atG | atC | 1 | 1 | B.19 | 0.037037 |
S | 177 | M177I | atG | atA | 1 | 1 | B.4.4 | 0.018868 |
S | 177 | M177I | atG | atC | 1 | 1 | C.16 | 0.00106 |
S | 177 | M177I | atG | atC | 1 | 1 | P.1.12 | 0.000484 |
S | 177 | M177I | atG | atC | 1 | 1 | P.1.4 | 0.000977 |
S | 177 | M177I | atG | atC | 1 | 1 | Q.6 | 0.006623 |
S | 177 | M177I | atG | atC | 1 | 1 | W.1 | 0.008696 |
S | 177 | M177I | atG | atC | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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