CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = M153T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S153M153TnonsynaTgaCg10286102640.99786122019-22021
S153M153TnonsynaTGaCT10286200.0019443922019-22021
S153M153TnonsynaTGaCA1028610.000097219522019-22021
S153M153TnonsynaTGaCC1028610.000097219522019-22021

Details of the mutation M153T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S153M153TaTgaCg1026410286All0.001963
S153M153TaTGaCT2010286All0.000004
S153M153TaTGaCC110286All0
S153M153TaTGaCA110286All0
S153M153TaTgaCg49734977B.1.1.2840.534099
S153M153TaTGaCT44977B.1.1.2840.00043
S153M153TaTgaCg900902B.1.10.016327
S153M153TaTGaCT2902B.1.10.000036
S153M153TaTgaCg727727B.1.1.70.000651
S153M153TaTgaCg702702B.10.00643
S153M153TaTgaCg473473B.1.1.1410.95171
S153M153TaTgaCg431444B.1.6270.870707
S153M153TaTGaCT13444B.1.6270.026263
S153M153TaTgaCg410410B.1.1.3970.923423
S153M153TaTgaCg311311B.1.1.2800.959877
S153M153TaTgaCg277277B.1.1.280.086212
S153M153TaTgaCg131131B.1.6320.879195
S153M153TaTgaCg6464B.1.360.009338
S153M153TaTgaCg4545AY.250.000271
S153M153TaTgaCg4545B.1.6390.978261
S153M153TaTgaCg4343B.1.1.3430.895833
S153M153TaTgaCg3333B.1.1.830.089431
S153M153TaTgaCg3131N.50.05477
S153M153TaTgaCg2828AY.3.10.002387
S153M153TaTgaCg2323B.1.617.20.000087
S153M153TaTgaCg2222B.1.1.1600.52381
S153M153TaTgaCg2222B.1.1.3961
S153M153TaTgaCg2222B.1.5950.005741
S153M153TaTgaCg1818B.1.1.4090.050992
S153M153TaTgaCg1818B.1.20.000158
S153M153TaTgaCg1717B.1.1.3190.298246
S153M153TaTgaCg1717B.1.177.160.011296
S153M153TaTgaCg1616B.1.1.3301
S153M153TaTgaCg1616B.1.5250.001811
S153M153TaTgaCg1414AY.440.000085
S153M153TaTgaCg1414P.20.002613
S153M153TaTgaCg1313AY.1020.000345
S153M153TaTgaCg1313B.1.1.2030.220339
S153M153TaTgaCg1212AY.420.000483
S153M153TaTgaCg1111B.1.1770.000145
S153M153TaTgaCg1111B.1.5090.009524
S153M153TaTgaCg1010A.190.09434
S153M153TaTgaCg1010AY.340.00097
S153M153TaTgaCg1010B.1.2580.000665
S153M153TaTgaCg99AY.350.002097
S153M153TaTgaCg99AY.40.000014
S153M153TaTgaCg99B.1.1.1350.042254
S153M153TaTgaCg88B0.001022
S153M153TaTgaCg88B.1.1.2910.005939
S153M153TaTgaCg88B.1.3360.019512
S153M153TaTgaCg68P.10.000095
S153M153TaTGaCT18P.10.000016
S153M153TaTGaCA18P.10.000016
S153M153TaTgaCg77AY.470.000218
S153M153TaTgaCg77AY.9.10.000586
S153M153TaTgaCg77B.1.4290.000165
S153M153TaTgaCg66AL.10.077922
S153M153TaTgaCg66B.1.1.510.010309
S153M153TaTgaCg55A.2.50.002495
S153M153TaTgaCg55AY.30.00005
S153M153TaTgaCg55B.1.1.3980.016129
S153M153TaTgaCg55B.1.1.4460.384615
S153M153TaTgaCg55B.1.1.4520.555556
S153M153TaTgaCg55B.1.1.5190.000199
S153M153TaTgaCg55B.1.2100.010661
S153M153TaTgaCg55B.1.5510.006452
S153M153TaTgaCg55P.50.068493
S153M153TaTgaCg55Q.80.000825
S153M153TaTgaCg44AY.390.000099
S153M153TaTgaCg44B.1.1.1610.014134
S153M153TaTgaCg44B.1.1.370.000771
S153M153TaTgaCg44B.1.1.3700.050633
S153M153TaTgaCg44B.1.4330.01278
S153M153TaTgaCg44B.1.6090.001918
S153M153TaTgaCg44Q.10.000505
S153M153TaTgaCg33AY.1190.000106
S153M153TaTgaCg33AY.330.0002
S153M153TaTgaCg33AY.4.20.000065
S153M153TaTgaCg33AY.430.000013
S153M153TaTgaCg33B.1.1.2530.007519
S153M153TaTgaCg33B.1.1.310.2
S153M153TaTgaCg33B.1.1.540.009063
S153M153TaTgaCg33B.1.1240.023438
S153M153TaTgaCg33B.1.220.003953
S153M153TaTgaCg33B.1.3560.005181
S153M153TaTgaCg33B.1.60.051724
S153M153TaTgaCg33B.1.6340.010274
S153M153TaTgaCg33B.1.6370.000219
S153M153TaTgaCg33N.30.017442
S153M153TaTgaCg220.111111
S153M153TaTgaCg22AB.10.016393
S153M153TaTgaCg22AY.7.10.000225
S153M153TaTgaCg22B.1.1.1170.019417
S153M153TaTgaCg22B.1.1.1480.017544
S153M153TaTgaCg22B.1.1.1700.002494
S153M153TaTgaCg22B.1.1.2770.001517
S153M153TaTgaCg22B.1.1.3170.000823
S153M153TaTgaCg22B.1.1.330.000842
S153M153TaTgaCg22B.1.1.4530.016949
S153M153TaTgaCg22B.1.1.5230.003125
S153M153TaTgaCg22B.1.1430.042553
S153M153TaTgaCg22B.1.177.440.001038
S153M153TaTgaCg22B.1.177.600.000437
S153M153TaTgaCg22B.1.2980.004228
S153M153TaTgaCg22B.1.3110.000549
S153M153TaTgaCg22B.1.36.290.001035
S153M153TaTgaCg22B.1.3600.025316
S153M153TaTgaCg22B.1.3880.181818
S153M153TaTgaCg22B.1.5580.009132
S153M153TaTgaCg22B.1.6230.001073
S153M153TaTgaCg22P.1.150.000465
S153M153TaTgaCg22P.60.006289
S153M153TaTgaCg11A.10.000282
S153M153TaTgaCg11A.2.5.20.001572
S153M153TaTgaCg11AY.1140.000231
S153M153TaTgaCg11AY.1180.000063
S153M153TaTgaCg11AY.1210.000135
S153M153TaTgaCg11AY.130.000161
S153M153TaTgaCg11AY.230.00007
S153M153TaTgaCg11AY.23.10.000417
S153M153TaTgaCg11AY.260.000028
S153M153TaTgaCg11AY.4.50.000107
S153M153TaTgaCg11AY.5.30.000337
S153M153TaTgaCg11AY.640.000595
S153M153TaTgaCg11AY.710.000475
S153M153TaTgaCg11AY.740.000116
S153M153TaTgaCg11AY.920.000287
S153M153TaTgaCg11AY.950.000761
S153M153TaTgaCg11AY.980.000079
S153M153TaTgaCg11AY.990.001049
S153M153TaTgaCg11B.1.1.1290.009174
S153M153TaTgaCg11B.1.1.1890.001513
S153M153TaTgaCg11B.1.1.1920.002309
S153M153TaTgaCg11B.1.1.1940.00495
S153M153TaTGaCC11B.1.1.2070.001182
S153M153TaTgaCg11B.1.1.2140.000055
S153M153TaTgaCg11B.1.1.2160.00089
S153M153TaTgaCg11B.1.1.2200.001859
S153M153TaTgaCg11B.1.1.2220.000204
S153M153TaTgaCg11B.1.1.2650.003155
S153M153TaTgaCg11B.1.1.2690.001353
S153M153TaTgaCg11B.1.1.2720.005208
S153M153TaTgaCg11B.1.1.2820.011628
S153M153TaTgaCg11B.1.1.2940.001266
S153M153TaTgaCg11B.1.1.3000.010753
S153M153TaTgaCg11B.1.1.3110.000358
S153M153TaTgaCg11B.1.1.3160.000925
S153M153TaTgaCg11B.1.1.4130.006897
S153M153TaTgaCg11B.1.1.4190.007407
S153M153TaTgaCg11B.1.1.4320.001266
S153M153TaTgaCg11B.1.1.4370.010417
S153M153TaTgaCg11B.1.1.4850.016667
S153M153TaTgaCg11B.1.1.560.017857
S153M153TaTgaCg11B.1.1.740.00431
S153M153TaTgaCg11B.1.1.890.006061
S153M153TaTgaCg11B.1.1.990.02381
S153M153TaTgaCg11B.1.1600.000031
S153M153TaTgaCg11B.1.177.730.000566
S153M153TaTgaCg11B.1.177.860.000183
S153M153TaTgaCg11B.1.2210.000071
S153M153TaTgaCg11B.1.221.10.002907
S153M153TaTgaCg11B.1.2400.000216
S153M153TaTgaCg11B.1.3020.013333
S153M153TaTgaCg11B.1.3400.004292
S153M153TaTgaCg11B.1.3410.022727
S153M153TaTgaCg11B.1.3490.000715
S153M153TaTgaCg11B.1.3670.000792
S153M153TaTgaCg11B.1.3750.00082
S153M153TaTgaCg11B.1.3960.000706
S153M153TaTgaCg11B.1.4000.000429
S153M153TaTgaCg11B.1.4170.028571
S153M153TaTgaCg11B.1.4270.00005
S153M153TaTgaCg11B.1.4430.004673
S153M153TaTgaCg11B.1.4520.013699
S153M153TaTgaCg11B.1.4800.002488
S153M153TaTgaCg11B.1.5030.002488
S153M153TaTgaCg11B.1.5260.000024
S153M153TaTgaCg11B.1.5330.009615
S153M153TaTgaCg11B.1.5960.000087
S153M153TaTgaCg11B.1.617.10.000129
S153M153TaTgaCg11B.1.6180.004032
S153M153TaTgaCg11B.1.80.001972
S153M153TaTgaCg11B.1.810.021277
S153M153TaTgaCg11B.290.003509
S153M153TaTgaCg11B.60.00091
S153M153TaTgaCg11C.370.000116
S153M153TaTgaCg11N.90.005952
S153M153TaTgaCg11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.