CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L878L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S878L878LsynTtaCta361433160.91754324194-24196
S878L878LsynttAttG36142970.082180424194-24196
S878L878LsynTtACtG361410.00027670224194-24196

Details of the mutation L878L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S878L878LTtaCta33163614All0.000634
S878L878LttAttG2973614All0.000057
S878L878LTtACtG13614All0
S878L878LTtaCta15571557B.1.619.10.998717
S878L878LTtaCta11071107B.1.6190.964286
S878L878LTtaCta254254AY.440.001546
S878L878LTtaCta62121AY.40.000096
S878L878LttAttG59121AY.40.000092
S878L878LTtaCta4480B.1.1.70.000039
S878L878LttAttG3680B.1.1.70.000032
S878L878LTtaCta6171B.1.617.20.00023
S878L878LttAttG1071B.1.617.20.000038
S878L878LttAttG5761B.1.20.000502
S878L878LTtaCta461B.1.20.000035
S878L878LttAttG3355B.10.000302
S878L878LTtaCta2255B.10.000202
S878L878LttAttG2031AY.30.000199
S878L878LTtaCta1131AY.30.000109
S878L878LTtaCta2129AY.430.000093
S878L878LttAttG729AY.430.000031
S878L878LTtACtG129AY.430.000004
S878L878LTtaCta2828B.1.177.600.006116
S878L878LTtaCta2727AY.99.20.002488
S878L878LTtaCta1720AY.250.000102
S878L878LttAttG320AY.250.000018
S878L878LTtaCta1213B.1.1600.000374
S878L878LttAttG113B.1.1600.000031
S878L878LTtaCta1112B.1.5250.001245
S878L878LttAttG112B.1.5250.000113
S878L878LTtaCta1010P.1.120.00484
S878L878LttAttG88AY.4.50.00086
S878L878LTtaCta77B.1.177.160.004651
S878L878LttAttG77P.1.140.000335
S878L878LttAttG46AY.1030.000025
S878L878LTtaCta26AY.1030.000012
S878L878LttAttG46AY.260.000113
S878L878LTtaCta26AY.260.000057
S878L878LttAttG36B.1.4290.000071
S878L878LTtaCta36B.1.4290.000071
S878L878LttAttG55AY.120.00158
S878L878LttAttG55AY.5.40.001384
S878L878LTtaCta55B.1.1.330.002104
S878L878LTtaCta55B.1.5230.012255
S878L878LTtaCta24AY.340.000194
S878L878LttAttG24AY.340.000194
S878L878LTtaCta34AY.390.000074
S878L878LttAttG14AY.390.000025
S878L878LTtaCta44B0.000511
S878L878LTtaCta24B.1.10.000036
S878L878LttAttG24B.1.10.000036
S878L878LTtaCta23AY.1170.000169
S878L878LttAttG13AY.1170.000085
S878L878LTtaCta23AY.200.000078
S878L878LttAttG13AY.200.000039
S878L878LttAttG33AY.790.003632
S878L878LttAttG23AY.98.10.000097
S878L878LTtaCta13AY.98.10.000048
S878L878LttAttG33B.1.2430.000209
S878L878LttAttG33B.1.5260.000071
S878L878LttAttG12AY.1020.000027
S878L878LTtaCta12AY.1020.000027
S878L878LTtaCta22AY.1200.000074
S878L878LTtaCta12AY.290.000016
S878L878LttAttG12AY.290.000016
S878L878LTtaCta12AY.460.000104
S878L878LttAttG12AY.460.000104
S878L878LTtaCta22AY.470.000062
S878L878LttAttG12AY.750.000056
S878L878LTtaCta12AY.750.000056
S878L878LttAttG22AY.90.000135
S878L878LTtaCta12AY.9.20.000037
S878L878LttAttG12AY.9.20.000037
S878L878LTtaCta22B.1.3510.000059
S878L878LTtaCta12B.1.4270.00005
S878L878LttAttG12B.1.4270.00005
S878L878LttAttG11AY.1050.000643
S878L878LTtaCta11AY.1060.000335
S878L878LttAttG11AY.1130.000142
S878L878LttAttG11AY.29.10.000221
S878L878LTtaCta11AY.450.000122
S878L878LTtaCta11AY.540.000095
S878L878LTtaCta11AY.610.000105
S878L878LTtaCta11AY.690.000187
S878L878LttAttG11AY.980.000079
S878L878LTtaCta11B.1.1.1410.002012
S878L878LTtaCta11B.1.1.1610.003534
S878L878LTtaCta11B.1.1.2190.005
S878L878LTtaCta11B.1.1.250.000569
S878L878LTtaCta11B.1.1.280.000311
S878L878LttAttG11B.1.1.5180.006329
S878L878LTtaCta11B.1.1.5190.00004
S878L878LTtaCta11B.1.177.440.000519
S878L878LttAttG11B.1.36.100.004785
S878L878LttAttG11B.1.4210.007463
S878L878LTtaCta11B.1.5950.000261
S878L878LttAttG11B.1.5960.000087
S878L878LTtaCta11P.10.000016
S878L878LTtaCta11P.1.170.000162
S878L878LTtaCta11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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