CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L821L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S821L821LsynCtaTta15132150260.99299524023-24025
S821L821LsynctActG15132840.0055511524023-24025
S821L821LsynctActT15132120.00079302124023-24025
S821L821LsynctActC15132100.00066085124023-24025

Details of the mutation L821L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S821L821LCtaTta1502615132All0.002874
S821L821LctActG8415132All0.000016
S821L821LctActT1215132All0.000002
S821L821LctActC1015132All0.000002
S821L821LCtaTta45974602AY.40.007155
S821L821LctActG54602AY.40.000008
S821L821LCtaTta38513867B.1.1.70.003448
S821L821LctActG93867B.1.1.70.000008
S821L821LctActC63867B.1.1.70.000005
S821L821LctActT13867B.1.1.70.000001
S821L821LCtaTta769769AU.10.973418
S821L821LCtaTta464479B.1.617.20.001747
S821L821LctActG15479B.1.617.20.000056
S821L821LCtaTta325330AY.430.00144
S821L821LctActG5330AY.430.000022
S821L821LCtaTta303309B.1.20.002668
S821L821LctActG5309B.1.20.000044
S821L821LctActC1309B.1.20.000009
S821L821LCtaTta229229B.1.1770.003015
S821L821LCtaTta224225AY.1020.005939
S821L821LctActT1225AY.1020.000027
S821L821LCtaTta221222AY.250.001329
S821L821LctActG1222AY.250.000006
S821L821LCtaTta202203B.1.4290.004753
S821L821LctActT1203B.1.4290.000024
S821L821LCtaTta178181AY.440.001083
S821L821LctActG3181AY.440.000018
S821L821LCtaTta157158B.10.001438
S821L821LctActG1158B.10.000009
S821L821LCtaTta155157AY.1030.000962
S821L821LctActG2157AY.1030.000012
S821L821LCtaTta117118P.10.001843
S821L821LctActC1118P.10.000016
S821L821LCtaTta115115AY.4.20.002494
S821L821LCtaTta103103B.1.2580.006854
S821L821LCtaTta9696B.1.258.170.009981
S821L821LCtaTta8993B.1.10.001615
S821L821LctActG393B.1.10.000054
S821L821LctActC193B.1.10.000018
S821L821LCtaTta8590AY.30.000845
S821L821LctActG490AY.30.00004
S821L821LctActT190AY.30.00001
S821L821LCtaTta8282B.1.5260.001927
S821L821LCtaTta8081AY.260.002265
S821L821LctActG181AY.260.000028
S821L821LCtaTta6767AY.39.10.002654
S821L821LCtaTta6363B.1.4270.003181
S821L821LCtaTta6262AY.4.30.052189
S821L821LCtaTta6262B.1.621.10.031361
S821L821LCtaTta5658AY.610.005868
S821L821LctActG258AY.610.00021
S821L821LCtaTta5858AY.9.10.004856
S821L821LCtaTta5757AY.1200.002119
S821L821LCtaTta5156AY.1000.002346
S821L821LctActG556AY.1000.00023
S821L821LCtaTta5555AY.1190.001942
S821L821LCtaTta5252P.1.140.002486
S821L821LCtaTta4949B.1.1.3680.151235
S821L821LCtaTta4848AY.390.001186
S821L821LCtaTta4547AY.290.00071
S821L821LctActG247AY.290.000032
S821L821LCtaTta4244AY.200.001632
S821L821LctActG244AY.200.000078
S821L821LCtaTta4242AY.98.10.002034
S821L821LCtaTta4040B.1.3510.001189
S821L821LCtaTta3838B.1.1600.001185
S821L821LCtaTta3838B.1.6210.003364
S821L821LCtaTta3236AY.470.000995
S821L821LctActG436AY.470.000124
S821L821LCtaTta3636B.1.1.5190.00143
S821L821LCtaTta3636B.1.5170.015371
S821L821LCtaTta3535AB.10.286885
S821L821LCtaTta3232AY.50.000661
S821L821LCtaTta3232B.1.438.10.003432
S821L821LCtaTta3131B.1.36.170.015316
S821L821LCtaTta2929AY.9.20.001065
S821L821LCtaTta2929AY.99.20.002673
S821L821LCtaTta2828B.1.360.004085
S821L821LCtaTta2427AY.460.002498
S821L821LctActT327AY.460.000312
S821L821LCtaTta2626AY.5.40.007194
S821L821LCtaTta2626AY.90.001757
S821L821LCtaTta2626P.1.150.006041
S821L821LCtaTta2525AY.23.10.010434
S821L821LCtaTta2424AY.270.001553
S821L821LCtaTta2323P.1.70.007344
S821L821LCtaTta2122AY.420.000845
S821L821LctActG122AY.420.00004
S821L821LCtaTta2222C.370.002553
S821L821LCtaTta2020AY.520.016287
S821L821LCtaTta2020B.1.2430.001392
S821L821LCtaTta2020P.1.10.006353
S821L821LCtaTta1718AY.230.001186
S821L821LctActG118AY.230.00007
S821L821LCtaTta1818AY.450.00219
S821L821LCtaTta1818B.1.5250.002037
S821L821LCtaTta1717AY.330.001135
S821L821LCtaTta1717B.1.5750.005158
S821L821LCtaTta1616B.1.177.210.001224
S821L821LCtaTta1415B.1.5960.00122
S821L821LctActT115B.1.5960.000087
S821L821LCtaTta1515B.1.6370.001096
S821L821LCtaTta1515P.20.0028
S821L821LCtaTta1414AY.1170.001183
S821L821LCtaTta1414AY.540.001335
S821L821LCtaTta1414AY.980.001106
S821L821LCtaTta1414B.1.1.2140.000776
S821L821LCtaTta1414B.1.36.290.007243
S821L821LCtaTta1313AY.1180.000814
S821L821LCtaTta1313AY.5.20.03202
S821L821LCtaTta1313AY.75.10.002344
S821L821LCtaTta1313B.1.1.4340.004531
S821L821LCtaTta1212AY.1130.001709
S821L821LCtaTta1212B.1.3910.013529
S821L821LCtaTta1212B.1.3960.008469
S821L821LCtaTta1212B.1.466.20.004695
S821L821LCtaTta1212B.1.5650.009724
S821L821LCtaTta1111AY.60.000452
S821L821LCtaTta1111AY.750.000616
S821L821LCtaTta1111B.1.1.3170.004529
S821L821LCtaTta1010AY.340.00097
S821L821LCtaTta910AY.360.001334
S821L821LctActG110AY.360.000148
S821L821LCtaTta1010B.1.2210.00071
S821L821LCtaTta1010B.1.351.30.008764
S821L821LCtaTta99AY.1210.001218
S821L821LCtaTta99AY.20.003205
S821L821LCtaTta89AY.3.10.000682
S821L821LctActG19AY.3.10.000085
S821L821LCtaTta99B.1.177.600.001966
S821L821LCtaTta99R.10.00081
S821L821LCtaTta88AD.20.001752
S821L821LCtaTta88AY.1070.003728
S821L821LCtaTta88AY.660.008556
S821L821LCtaTta88B.1.1.2220.001632
S821L821LCtaTta88B.1.1.280.00249
S821L821LCtaTta88C.36.30.004538
S821L821LCtaTta77AY.10.00277
S821L821LCtaTta67AY.1090.004438
S821L821LctActG17AY.1090.00074
S821L821LCtaTta77AY.1160.002007
S821L821LCtaTta67AY.46.60.000433
S821L821LctActG17AY.46.60.000072
S821L821LCtaTta77AY.670.00325
S821L821LCtaTta77B.1.1.2160.006233
S821L821LCtaTta77B.1.1.630.002701
S821L821LCtaTta77B.1.177.570.001967
S821L821LCtaTta77B.1.177.860.001284
S821L821LCtaTta77B.1.2060.00571
S821L821LCtaTta77B.1.3990.01354
S821L821LCtaTta77B.1.5770.004811
S821L821LCtaTta66A0.002322
S821L821LCtaTta66AY.16.10.00282
S821L821LCtaTta66B.1.1.330.002525
S821L821LCtaTta66B.1.177.730.003398
S821L821LCtaTta66B.1.2340.000792
S821L821LCtaTta66B.1.4740.011407
S821L821LCtaTta66B.1.5030.014925
S821L821LCtaTta66B.1.6040.103448
S821L821LCtaTta66C.350.004644
S821L821LCtaTta55A.2.50.002495
S821L821LCtaTta55AY.160.001898
S821L821LCtaTta55AY.4.50.000537
S821L821LCtaTta55AY.680.001369
S821L821LCtaTta55B.1.1.1700.006234
S821L821LCtaTta55B.1.1.2770.003794
S821L821LCtaTta55B.1.1.3110.001791
S821L821LCtaTta55B.1.1.3180.001509
S821L821LCtaTta55B.1.1.910.833333
S821L821LCtaTta55B.1.5090.004329
S821L821LCtaTta35B.1.5950.000783
S821L821LctActG25B.1.5950.000522
S821L821LCtaTta45D.20.0003
S821L821LctActC15D.20.000075
S821L821LCtaTta44AY.1100.000451
S821L821LCtaTta44AY.1140.000924
S821L821LCtaTta34AY.140.000264
S821L821LctActG14AY.140.000088
S821L821LCtaTta44AY.190.004561
S821L821LCtaTta44AY.46.40.000658
S821L821LCtaTta44AY.5.30.00135
S821L821LCtaTta44B.1.1.100.004459
S821L821LCtaTta44B.1.1.1890.006051
S821L821LCtaTta44B.1.1.3120.007648
S821L821LCtaTta44B.1.1.470.02139
S821L821LCtaTta44B.1.177.810.000757
S821L821LCtaTta44B.1.3210.137931
S821L821LCtaTta44B.1.3360.009756
S821L821LCtaTta44B.1.4690.01444
S821L821LCtaTta44B.1.4990.004202
S821L821LCtaTta44Q.10.000505
S821L821LCtaTta33AY.1060.001005
S821L821LctActG23AY.29.10.000441
S821L821LCtaTta13AY.29.10.000221
S821L821LCtaTta33AY.350.000699
S821L821LCtaTta33AY.370.000948
S821L821LCtaTta33AY.46.10.00308
S821L821LCtaTta33AY.710.001425
S821L821LCtaTta33AY.840.001312
S821L821LCtaTta33AY.920.000862
S821L821LCtaTta33B0.000383
S821L821LCtaTta33B.1.1.3060.001315
S821L821LCtaTta33B.1.1.410.018987
S821L821LCtaTta33B.1.177.420.002683
S821L821LCtaTta33B.1.2600.010033
S821L821LCtaTta33B.1.3060.017143
S821L821LCtaTta33B.1.3110.000824
S821L821LCtaTta33B.1.5070.033708
S821L821LCtaTta23B.1.5510.002581
S821L821LctActG13B.1.5510.00129
S821L821LctActT33B.1.5610.001191
S821L821LCtaTta33B.1.5990.010949
S821L821LCtaTta33C.360.002732
S821L821LCtaTta22A.210.00554
S821L821LCtaTta22A.270.003311
S821L821LCtaTta22AU.30.004219
S821L821LCtaTta22AY.1010.000981
S821L821LCtaTta22AY.240.000862
S821L821LCtaTta22AY.300.000791
S821L821LCtaTta22AY.34.10.00102
S821L821LCtaTta22AY.4.40.000818
S821L821LCtaTta22AY.480.00093
S821L821LCtaTta22AY.530.000575
S821L821LctActG12AY.550.000917
S821L821LCtaTta12AY.550.000917
S821L821LCtaTta22AY.590.001059
S821L821LCtaTta22AY.600.001876
S821L821LCtaTta22AY.620.000871
S821L821LCtaTta22AY.650.001066
S821L821LCtaTta22AY.690.000373
S821L821LCtaTta22AY.720.002721
S821L821LCtaTta22AY.740.000231
S821L821LCtaTta22AY.770.002255
S821L821LCtaTta22AY.850.000854
S821L821LCtaTta22AY.99.10.003106
S821L821LCtaTta22B.1.1.1410.004024
S821L821LCtaTta22B.1.1.1610.007067
S821L821LCtaTta22B.1.1.1760.000879
S821L821LCtaTta22B.1.1.250.001137
S821L821LCtaTta22B.1.1.2620.030303
S821L821LCtaTta22B.1.1.3490.020619
S821L821LCtaTta22B.1.1.4320.002532
S821L821LCtaTta22B.1.1.670.009132
S821L821LCtaTta22B.1.1.700.000682
S821L821LCtaTta22B.1.1420.005797
S821L821LCtaTta22B.1.1670.015625
S821L821LCtaTta22B.1.177.440.001038
S821L821LCtaTta22B.1.177.790.004684
S821L821LCtaTta22B.1.177.830.002963
S821L821LCtaTta22B.1.2050.047619
S821L821LCtaTta22B.1.214.20.001199
S821L821LCtaTta22B.1.2370.00995
S821L821LCtaTta22B.1.2400.000431
S821L821LCtaTta22B.1.3190.006098
S821L821LCtaTta22B.1.3240.00321
S821L821LCtaTta22B.1.36.220.002415
S821L821LCtaTta22B.1.36.260.005714
S821L821LCtaTta22B.1.36.70.008
S821L821LCtaTta22B.1.3890.002004
S821L821LCtaTta22B.1.4280.002041
S821L821LCtaTta22B.1.4590.008163
S821L821LCtaTta22B.1.564.10.003155
S821L821LCtaTta22B.1.5760.001813
S821L821LCtaTta22B.1.5970.009259
S821L821LCtaTta22B.1.617.10.000258
S821L821LCtaTta22B.1.6280.000705
S821L821LCtaTta22B.1.80.003945
S821L821LCtaTta22B.1.88.10.009615
S821L821LCtaTta22P.1.100.000539
S821L821LCtaTta22P.1.10.10.01626
S821L821LCtaTta22P.1.120.000968
S821L821LCtaTta22P.1.40.001953
S821L821LCtaTta22P.1.80.009569
S821L821LCtaTta11A.2.5.20.001572
S821L821LCtaTta11A.280.002646
S821L821LCtaTta11AY.100.00053
S821L821LCtaTta11AY.1080.001103
S821L821LCtaTta11AY.120.000316
S821L821LCtaTta11AY.120.10.000321
S821L821LCtaTta11AY.120.20.001285
S821L821LCtaTta11AY.120.2.10.000498
S821L821LCtaTta11AY.320.000532
S821L821LCtaTta11AY.4.10.000737
S821L821LCtaTta11AY.400.000964
S821L821LCtaTta11AY.46.20.000635
S821L821LCtaTta11AY.46.50.000198
S821L821LCtaTta11AY.7.10.000113
S821L821LCtaTta11AY.7.20.000559
S821L821LCtaTta11AY.730.000665
S821L821LCtaTta11AY.80.000606
S821L821LCtaTta11AY.820.001357
S821L821LCtaTta11AY.870.000833
S821L821LCtaTta11AY.890.004902
S821L821LCtaTta11AY.910.00073
S821L821LCtaTta11AY.930.000273
S821L821LCtaTta11AY.940.000443
S821L821LCtaTta11AZ.10.000867
S821L821LCtaTta11B.1.1.10.000327
S821L821LCtaTta11B.1.1.1530.001095
S821L821LCtaTta11B.1.1.1590.004673
S821L821LCtaTta11B.1.1.1780.041667
S821L821LCtaTta11B.1.1.1940.00495
S821L821LCtaTta11B.1.1.2190.005
S821L821LCtaTta11B.1.1.2290.005747
S821L821LCtaTta11B.1.1.2530.002506
S821L821LCtaTta11B.1.1.2540.011236
S821L821LCtaTta11B.1.1.2550.00303
S821L821LCtaTta11B.1.1.2690.001353
S821L821LCtaTta11B.1.1.3160.000925
S821L821LCtaTta11B.1.1.3220.008772
S821L821LCtaTta11B.1.1.3260.001761
S821L821LCtaTta11B.1.1.3290.003846
S821L821LCtaTta11B.1.1.3370.003597
S821L821LCtaTta11B.1.1.3480.000796
S821L821LCtaTta11B.1.1.3650.005587
S821L821LCtaTta11B.1.1.3690.000446
S821L821LCtaTta11B.1.1.370.000193
S821L821LCtaTta11B.1.1.3870.058824
S821L821LCtaTta11B.1.1.3880.045455
S821L821LCtaTta11B.1.1.3910.008547
S821L821LCtaTta11B.1.1.4090.002833
S821L821LCtaTta11B.1.1.4160.000905
S821L821LCtaTta11B.1.1.4200.001006
S821L821LCtaTta11B.1.1.4400.011765
S821L821LctActT11B.1.1.4480.002033
S821L821LCtaTta11B.1.1.460.004367
S821L821LCtaTta11B.1.1.4640.001473
S821L821LCtaTta11B.1.1.4670.019231
S821L821LCtaTta11B.1.1.480.002874
S821L821LCtaTta11B.1.1.500.000679
S821L821LCtaTta11B.1.1.80.003584
S821L821LCtaTta11B.1.1.890.006061
S821L821LCtaTta11B.1.1110.001175
S821L821LCtaTta11B.1.120.008
S821L821LCtaTta11B.1.1260.001276
S821L821LCtaTta11B.1.1280.000635
S821L821LCtaTta11B.1.1390.000733
S821L821LCtaTta11B.1.160.250.011111
S821L821LCtaTta11B.1.160.300.002976
S821L821LCtaTta11B.1.177.110.001698
S821L821LCtaTta11B.1.177.120.000152
S821L821LCtaTta11B.1.177.150.000631
S821L821LCtaTta11B.1.177.160.000664
S821L821LCtaTta11B.1.177.170.000821
S821L821LCtaTta11B.1.177.180.00116
S821L821LCtaTta11B.1.177.190.001431
S821L821LCtaTta11B.1.177.240.001295
S821L821LCtaTta11B.1.177.390.015385
S821L821LCtaTta11B.1.177.40.000211
S821L821LCtaTta11B.1.177.450.000381
S821L821LCtaTta11B.1.177.530.002392
S821L821LCtaTta11B.1.177.540.000606
S821L821LCtaTta11B.1.177.560.000668
S821L821LCtaTta11B.1.177.620.001192
S821L821LCtaTta11B.1.177.750.001041
S821L821LCtaTta11B.1.177.770.000726
S821L821LctActG11B.1.2120.016667
S821L821LCtaTta11B.1.2130.014925
S821L821LCtaTta11B.1.221.10.002907
S821L821LCtaTta11B.1.221.20.004016
S821L821LCtaTta11B.1.221.40.004167
S821L821LCtaTta11B.1.2220.001692
S821L821LCtaTta11B.1.2350.002519
S821L821LCtaTta11B.1.2390.001221
S821L821LCtaTta11B.1.258.30.001675
S821L821LCtaTta11B.1.258.40.003448
S821L821LCtaTta11B.1.2650.001271
S821L821LCtaTta11B.1.3320.003497
S821L821LCtaTta11B.1.3370.005587
S821L821LCtaTta11B.1.3490.000715
S821L821LCtaTta11B.1.351.20.000303
S821L821LCtaTta11B.1.36.10.00114
S821L821LCtaTta11B.1.36.100.004785
S821L821LCtaTta11B.1.36.180.00042
S821L821LCtaTta11B.1.36.280.005747
S821L821LCtaTta11B.1.36.310.001751
S821L821LCtaTta11B.1.36.360.000602
S821L821LCtaTta11B.1.36.390.002217
S821L821LCtaTta11B.1.3610.001289
S821L821LCtaTta11B.1.3620.001541
S821L821LCtaTta11B.1.3690.000285
S821L821LCtaTta11B.1.4000.000429
S821L821LCtaTta11B.1.416.10.001563
S821L821LCtaTta11B.1.4260.001009
S821L821LCtaTta11B.1.4330.003195
S821L821LCtaTta11B.1.4560.003268
S821L821LCtaTta11B.1.4620.007246
S821L821LCtaTta11B.1.5050.004386
S821L821LCtaTta11B.1.5230.002451
S821L821LctActG11B.1.5240.001406
S821L821LCtaTta11B.1.5300.007143
S821L821LCtaTta11B.1.5440.006024
S821L821LCtaTta11B.1.5490.007194
S821L821LCtaTta11B.1.5640.000426
S821L821LCtaTta11B.1.5670.003333
S821L821LCtaTta11B.1.5880.00091
S821L821LCtaTta11B.1.596.10.009346
S821L821LCtaTta11B.1.6000.005848
S821L821LCtaTta11B.1.6220.012987
S821L821LCtaTta11B.1.6230.000536
S821L821LCtaTta11B.1.6250.002353
S821L821LCtaTta11B.1.9.40.006135
S821L821LCtaTta11B.320.027027
S821L821LCtaTta11B.400.000364
S821L821LCtaTta11B.6.40.045455
S821L821LCtaTta11B.6.60.000889
S821L821LCtaTta11C.10.002392
S821L821LCtaTta11C.300.001727
S821L821LCtaTta11C.60.037037
S821L821LCtaTta11N.20.038462
S821L821LCtaTta11P.1.110.010204
S821L821LCtaTta11P.1.130.000898
S821L821LCtaTta11P.1.160.000374
S821L821LCtaTta11P.1.170.000162
S821L821LCtaTta11P.1.60.001946
S821L821LCtaTta11Q.20.000613
S821L821LCtaTta11Q.40.000455
S821L821LCtaTta11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.