CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L5del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S5L5del1delCtt-tt5755270.91652221575-21577
S5L5del1delcTTc-N575450.078260921575-21577
S5L5del1delCTT-NN57520.0034782621575-21577
S5L5del1delctTct-57510.0017391321575-21577

Details of the mutation L5del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S5L5del1Ctt-tt527575All0.000101
S5L5del1cTTc-N45575All0.000009
S5L5del1CTT-NN2575All0
S5L5del1ctTct-1575All0
S5L5del1Ctt-tt263264B.1.1.70.000235
S5L5del1ctTct-1264B.1.1.70.000001
S5L5del1cTTc-N4547AY.40.00007
S5L5del1CTT-NN247AY.40.000003
S5L5del1Ctt-tt4545B.1.5260.001058
S5L5del1Ctt-tt2525B.1.177.120.003792
S5L5del1Ctt-tt2121B.1.617.20.000079
S5L5del1Ctt-tt1616B.1.20.000141
S5L5del1Ctt-tt1515AY.440.000091
S5L5del1Ctt-tt77B.1.177.810.001325
S5L5del1Ctt-tt77B.1.360.001021
S5L5del1Ctt-tt66AY.1030.000037
S5L5del1Ctt-tt66AY.30.00006
S5L5del1Ctt-tt66B.1.6210.000531
S5L5del1Ctt-tt66U.20.052632
S5L5del1Ctt-tt55AY.4.40.002046
S5L5del1Ctt-tt55B.1.1.700.001705
S5L5del1Ctt-tt55B.1.4270.000252
S5L5del1Ctt-tt55Q.10.000632
S5L5del1Ctt-tt44AY.430.000018
S5L5del1Ctt-tt44AY.650.002132
S5L5del1Ctt-tt44B.10.000037
S5L5del1Ctt-tt44B.1.177.210.000306
S5L5del1Ctt-tt33AY.250.000018
S5L5del1Ctt-tt33AY.290.000047
S5L5del1Ctt-tt33AY.39.10.000119
S5L5del1Ctt-tt33B.1.1600.000094
S5L5del1Ctt-tt33B.1.1770.00004
S5L5del1Ctt-tt22AY.340.000194
S5L5del1Ctt-tt22AY.4.50.000215
S5L5del1Ctt-tt22AY.620.000871
S5L5del1Ctt-tt22AY.7.10.000225
S5L5del1Ctt-tt22B.1.2210.000142
S5L5del1Ctt-tt22B.1.4000.000858
S5L5del1Ctt-tt22B.1.4290.000047
S5L5del1Ctt-tt22B.1.6120.005305
S5L5del1Ctt-tt11A.2.50.000499
S5L5del1Ctt-tt11AY.1000.000046
S5L5del1Ctt-tt11AY.1020.000027
S5L5del1Ctt-tt11AY.1200.000037
S5L5del1Ctt-tt11AY.120.10.000321
S5L5del1Ctt-tt11AY.350.000233
S5L5del1Ctt-tt11AY.380.000499
S5L5del1Ctt-tt11AY.390.000025
S5L5del1Ctt-tt11AY.470.000031
S5L5del1Ctt-tt11AY.670.000464
S5L5del1Ctt-tt11AY.710.000475
S5L5del1Ctt-tt11AY.900.000684
S5L5del1Ctt-tt11AY.920.000287
S5L5del1Ctt-tt11B0.000128
S5L5del1Ctt-tt11B.1.10.000018
S5L5del1Ctt-tt11B.1.1.2980.000862
S5L5del1Ctt-tt11B.1.1.3170.000412
S5L5del1Ctt-tt11B.1.1.3180.000302
S5L5del1Ctt-tt11B.1.1.4330.001425
S5L5del1Ctt-tt11B.1.1.630.000386
S5L5del1Ctt-tt11B.1.110.30.000718
S5L5del1Ctt-tt11B.1.177.310.011494
S5L5del1Ctt-tt11B.1.177.460.000918
S5L5del1Ctt-tt11B.1.177.770.000726
S5L5del1Ctt-tt11B.1.177.800.001912
S5L5del1Ctt-tt11B.1.2400.000216
S5L5del1Ctt-tt11B.1.2580.000067
S5L5del1Ctt-tt11B.1.258.110.000396
S5L5del1Ctt-tt11B.1.3510.00003
S5L5del1Ctt-tt11B.1.351.20.000303
S5L5del1Ctt-tt11B.1.5250.000113
S5L5del1Ctt-tt11B.1.6090.000479
S5L5del1Ctt-tt11B.60.00091
S5L5del1Ctt-tt11P.1.130.000898
S5L5del1Ctt-tt11P.20.000187
S5L5del1Ctt-tt11Q.80.000165
S5L5del1Ctt-tt11R.10.00009