CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L5F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S5L5FnonsynCttTtt1400521400510.99999321575-21577
S5L5FnonsynCtTTtC14005210.0000071402121575-21577

Details of the mutation L5F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S5L5FCttTtt140051140052All0.026786
S5L5FCtTTtC1140052All0
S5L5FCttTtt4118741187B.1.5260.968081
S5L5FCttTtt3910639106B.1.1.70.035009
S5L5FCttTtt76947694AY.40.011975
S5L5FCttTtt49174917B.1.617.20.018515
S5L5FCttTtt33143314B.1.20.029181
S5L5FCttTtt22452245AY.430.009946
S5L5FCttTtt21812181AY.4.40.89239
S5L5FCttTtt21542154AY.250.012956
S5L5FCttTtt20932093AY.1030.012996
S5L5FCttTtt16871687AY.440.010268
S5L5FCttTtt15751575B.10.014426
S5L5FCttTtt14851485B.1.1770.019554
S5L5FCttTtt13641364AY.30.013567
S5L5FCttTtt10081008AY.290.0159
S5L5FCttTtt928928B.1.10.016835
S5L5FCttTtt777777B.1.1.5190.030855
S5L5FCttTtt775775AY.1190.027364
S5L5FCttTtt708708B.1.4290.016658
S5L5FCttTtt632632AY.1020.016757
S5L5FCttTtt596596AY.4.20.012926
S5L5FCttTtt593593AY.260.016788
S5L5FCttTtt591591P.10.009311
S5L5FCttTtt556556B.1.3510.016528
S5L5FCttTtt523523B.1.4270.02641
S5L5FCttTtt489489AY.470.01521
S5L5FCttTtt471471AY.50.009726
S5L5FCttTtt470470B.1.1.2410.973085
S5L5FCttTtt466466B.1.6090.223394
S5L5FCttTtt456456B.1.1.370.087946
S5L5FCttTtt427427AY.390.010552
S5L5FCttTtt400400AY.200.015546
S5L5FCttTtt400400B.1.1.2140.022183
S5L5FCttTtt399399B.1.6370.029156
S5L5FCttTtt397397AY.1000.018265
S5L5FCttTtt365365B.1.5960.031806
S5L5FCttTtt321321Q.80.052935
S5L5FCttTtt308308B.1.1600.009606
S5L5FCttTtt279279AY.420.011224
S5L5FCttTtt279279B.1.177.170.229064
S5L5FCttTtt278278AY.1200.010336
S5L5FCttTtt259259AY.98.10.012544
S5L5FCttTtt248248AH.30.942966
S5L5FCttTtt245245B.1.2340.032326
S5L5FCttTtt243243B.1.177.730.137599
S5L5FCttTtt239239AY.46.60.017258
S5L5FCttTtt235235AY.350.054766
S5L5FCttTtt228228P.1.140.010899
S5L5FCttTtt219219B.1.177.600.047837
S5L5FCttTtt219219B.1.2430.015239
S5L5FCttTtt206206B.1.177.120.03125
S5L5FCttTtt199199B.1.5250.022519
S5L5FCttTtt195195AY.650.103945
S5L5FCttTtt195195C.370.022632
S5L5FCttTtt190190AY.7.10.021413
S5L5FCttTtt181182B.1.2400.039017
S5L5FCtTTtC1182B.1.2400.000216
S5L5FCttTtt180180B.1.6120.477454
S5L5FCttTtt168168R.10.015122
S5L5FCttTtt166166B.1.177.810.031427
S5L5FCttTtt158158B.1.6210.013986
S5L5FCttTtt148148AY.99.20.013639
S5L5FCttTtt146146B.1.1.700.049795
S5L5FCttTtt137137B.1.2210.009731
S5L5FCttTtt137137B.1.2580.009117
S5L5FCttTtt132132B.1.36.160.188034
S5L5FCttTtt131131AY.530.037665
S5L5FCttTtt129129Q.10.016296
S5L5FCttTtt128128AY.140.011266
S5L5FCttTtt128128AY.3.10.010913
S5L5FCttTtt127127AY.39.10.005031
S5L5FCttTtt126126B.1.360.018383
S5L5FCttTtt124124AY.1180.007768
S5L5FCttTtt121121AY.330.00808
S5L5FCttTtt121121AY.370.038243
S5L5FCttTtt117117AY.690.021841
S5L5FCttTtt117117AY.980.009242
S5L5FCttTtt114114AY.60.004689
S5L5FCttTtt113113B.1.1.3010.133255
S5L5FCttTtt112112AY.90.007571
S5L5FCttTtt110110P.20.02053
S5L5FCttTtt106106AY.230.007393
S5L5FCttTtt106106B.1.3690.030234
S5L5FCttTtt104104B.1.177.870.075691
S5L5FCttTtt104104B.1.258.170.010813
S5L5FCttTtt9898AY.750.00549
S5L5FCttTtt8989AY.1170.007522
S5L5FCttTtt8888AY.610.00922
S5L5FCttTtt8888AY.9.20.003232
S5L5FCttTtt8686U.20.754386
S5L5FCttTtt8484B.1.1.2220.017136
S5L5FCttTtt8282AY.70.016072
S5L5FCttTtt8181AH.20.975904
S5L5FCttTtt8080B.1.36.380.131363
S5L5FCttTtt7979D.20.005928
S5L5FCttTtt7777AY.460.008014
S5L5FCttTtt7575AY.46.40.012338
S5L5FCttTtt7272B.1.1.2660.878049
S5L5FCttTtt7272B.1.5950.018789
S5L5FCttTtt7070AY.450.008518
S5L5FCttTtt7070B.1.177.860.012842
S5L5FCttTtt6868AY.360.010079
S5L5FCttTtt6666B.1.466.20.025822
S5L5FCttTtt6666B.1.5750.020024
S5L5FCttTtt6565B.1.438.10.006972
S5L5FCttTtt6464B.1.177.40.013508
S5L5FCttTtt6161B.1.1.2310.188854
S5L5FCttTtt6161B.1.1.4200.061368
S5L5FCttTtt6161B.1.177.570.01714
S5L5FCttTtt6161B.1.6190.053136
S5L5FCttTtt6060P.1.170.009706
S5L5FCttTtt5858B.1.1.550.753247
S5L5FCttTtt5757AY.270.003689
S5L5FCttTtt5656AY.1130.007974
S5L5FCttTtt5656B.1.4740.106464
S5L5FCttTtt5555B.1.1.1150.491071
S5L5FCttTtt5252AY.340.005042
S5L5FCttTtt5252AY.930.0142
S5L5FCttTtt5252B.1.177.210.003976
S5L5FCttTtt4949AY.540.004672
S5L5FCttTtt4949B.1.351.20.014826
S5L5FCttTtt4848B.1.177.300.120603
S5L5FCttTtt4747AY.1210.00636
S5L5FCttTtt4747B.1.1.10.015354
S5L5FCttTtt4747B.1.1.4320.059494
S5L5FCttTtt4646AY.1140.010631
S5L5FCttTtt4646B.1.3110.01263
S5L5FCttTtt4646Q.30.006672
S5L5FCttTtt4545A0.017415
S5L5FCttTtt4545B.1.1.2840.004833
S5L5FCttTtt4545B.400.016393
S5L5FCttTtt4343B.1.1110.050529
S5L5FCttTtt4343P.1.150.009991
S5L5FCttTtt4242AY.34.10.021418
S5L5FCttTtt4242B.1.214.20.02518
S5L5FCttTtt4242P.1.160.015713
S5L5FCttTtt4040B.1.177.770.029049
S5L5FCttTtt4040B.1.6230.021459
S5L5FCttTtt3939AY.1100.004395
S5L5FCttTtt3939B.1.1.3180.011768
S5L5FCttTtt3939B.1.1.3690.017403
S5L5FCttTtt3838AY.5.30.012821
S5L5FCttTtt3838AY.9.10.003182
S5L5FCttTtt3838B.1.177.750.039542
S5L5FCttTtt3737AY.4.50.003977
S5L5FCttTtt3737B0.004729
S5L5FCttTtt3737B.1.1.3170.015233
S5L5FCttTtt3737B.1.621.10.018715
S5L5FCttTtt3636B.1.1.410.227848
S5L5FCttTtt3636P.1.10.011436
S5L5FCttTtt3535B.1.1.4340.012199
S5L5FCttTtt3535B.1.5650.028363
S5L5FCttTtt3434AY.920.009767
S5L5FCttTtt3434B.1.36.290.017589
S5L5FCttTtt3333AY.1110.006044
S5L5FCttTtt3232B.1.2790.016436
S5L5FCttTtt3232B.1.5640.013629
S5L5FCttTtt3131AZ.20.025452
S5L5FCttTtt3131B.1.1.2391
S5L5FCttTtt3131B.1.6280.010923
S5L5FCttTtt3131P.1.120.015005
S5L5FCttTtt3131P.1.70.009898
S5L5FCttTtt3030AY.29.10.006615
S5L5FCttTtt3030AY.740.003469
S5L5FCttTtt3030AY.840.013123
S5L5FCttTtt3030B.1.1.630.011574
S5L5FCttTtt3030B.1.177.70.004946
S5L5FCttTtt3030B.1.351.50.017986
S5L5FCttTtt3030B.1.36.180.012605
S5L5FCttTtt3030B.1.617.10.003869
S5L5FCttTtt2929Q.40.013188
S5L5FCttTtt2828AY.130.004507
S5L5FCttTtt2828AY.160.01063
S5L5FCttTtt2828AY.4.2.10.004172
S5L5FCttTtt2828B.1.1.2860.081159
S5L5FCttTtt2828B.1.5820.013739
S5L5FCttTtt2828C.36.30.015882
S5L5FCttTtt2727A.10.00761
S5L5FCttTtt2727AA.40.245455
S5L5FCttTtt2727AY.870.022481
S5L5FCttTtt2727B.1.1.3160.024977
S5L5FCttTtt2727B.1.36.80.027
S5L5FCttTtt2727B.1.564.10.042587
S5L5FCttTtt2626AY.1010.012751
S5L5FCttTtt2626B.1.5170.011102
S5L5FCttTtt2626P.1.100.007006
S5L5FCttTtt2525A.2.50.012475
S5L5FCttTtt2525AD.20.005474
S5L5FCttTtt2525AY.1060.008372
S5L5FCttTtt2525B.1.1.1760.010984
S5L5FCttTtt2525B.1.1.2750.280899
S5L5FCttTtt2525B.1.1.280.007781
S5L5FCttTtt2525B.1.2410.020292
S5L5FCttTtt2525B.1.36.10.028506
S5L5FCttTtt2525C.350.01935
S5L5FCttTtt2525S.10.123762
S5L5FCttTtt2424AY.46.50.004762
S5L5FCttTtt2424B.1.1.2160.021371
S5L5FCttTtt2424B.1.1.250.013644
S5L5FCttTtt2424B.1.1.3060.010522
S5L5FCttTtt2323AY.670.010678
S5L5FCttTtt2323B.1.1.1980.033774
S5L5FCttTtt2323B.1.1470.017385
S5L5FCttTtt2222AY.5.40.006087
S5L5FCttTtt2222AY.730.014637
S5L5FCttTtt2222AY.850.009398
S5L5FCttTtt2222B.1.1.500.014936
S5L5FCttTtt2222B.1.160.160.020446
S5L5FCttTtt2222B.1.258.220.058667
S5L5FCttTtt2222B.1.4000.009438
S5L5FCttTtt2121AY.75.10.003787
S5L5FCttTtt2121B.1.4260.021191
S5L5FCttTtt2121B.1.5660.403846
S5L5FCttTtt2020AY.1160.005736
S5L5FCttTtt2020AY.16.10.009398
S5L5FCttTtt2020B.1.1390.014663
S5L5FCttTtt2020B.1.3990.038685
S5L5FCttTtt1919AU.10.024051
S5L5FCttTtt1919AY.4.10.014012
S5L5FCttTtt1919B.1.5770.013058
S5L5FCttTtt1818AE.80.008802
S5L5FCttTtt1818AY.10.007123
S5L5FCttTtt1818AY.400.017358
S5L5FCttTtt1818B.1.1.3120.034417
S5L5FCttTtt1818B.1.5610.007146
S5L5FCttTtt1818B.3.10.029851
S5L5FCttTtt1717AY.1050.010932
S5L5FCttTtt1717AY.910.012418
S5L5FCttTtt1717B.1.1.2770.012898
S5L5FCttTtt1717B.1.1.2800.052469
S5L5FCttTtt1717B.1.177.540.010309
S5L5FCttTtt1717B.1.177.650.011311
S5L5FCttTtt1717B.1.177.800.032505
S5L5FCttTtt1717B.1.2320.009135
S5L5FCttTtt1717B.1.36.390.037694
S5L5FCttTtt1616AY.590.008475
S5L5FCttTtt1616B.1.3620.024653
S5L5FCttTtt1616B.1.3710.017957
S5L5FCttTtt1616B.1.3960.011291
S5L5FCttTtt1616B.1.4700.022472
S5L5FCttTtt1616B.1.5880.014559
S5L5FCttTtt1515AY.120.10.004815
S5L5FCttTtt1515AY.480.006977
S5L5FCttTtt1515B.1.1.330.006313
S5L5FCttTtt1515B.1.110.30.010776
S5L5FCttTtt1515B.1.177.180.017401
S5L5FCttTtt1515B.1.177.820.00716
S5L5FCttTtt1515B.1.2650.01906
S5L5FCttTtt1515B.1.3490.010722
S5L5FCttTtt1515B.1.4970.004721
S5L5FCttTtt1515C.36.10.062241
S5L5FCttTtt1515N.50.026502
S5L5FCttTtt1515P.1.60.029183
S5L5FCttTtt1414AY.570.009186
S5L5FCttTtt1414AY.620.0061
S5L5FCttTtt1414AY.640.008333
S5L5FCttTtt1414AY.950.010654
S5L5FCttTtt1414B.1.1.3560.119658
S5L5FCttTtt1414B.1.1.5210.074866
S5L5FCttTtt1414B.1.1.5250.076503
S5L5FCttTtt1414B.1.1280.008895
S5L5FCttTtt1414B.1.177.160.009302
S5L5FCttTtt1414B.1.177.520.024605
S5L5FCttTtt1414B.1.177.620.016687
S5L5FCttTtt1414B.1.36.170.006917
S5L5FCttTtt1414B.1.5160.027397
S5L5FCttTtt1313A.23.10.009155
S5L5FCttTtt1313AY.120.004109
S5L5FCttTtt1313AY.300.005144
S5L5FCttTtt1313AY.7.20.007271
S5L5FCttTtt1313B.1.1.1380.078788
S5L5FCttTtt1313B.1.1.2980.011207
S5L5FCttTtt1313B.1.1.390.006626
S5L5FCttTtt1313B.1.177.450.004956
S5L5FCttTtt1313B.1.2180.06701
S5L5FCttTtt1313B.1.36.360.007827
S5L5FCttTtt1313B.1.5510.016774
S5L5FCttTtt1313B.450.049808
S5L5FCttTtt1212AY.1070.005592
S5L5FCttTtt1212AY.410.003527
S5L5FCttTtt1212AY.510.010909
S5L5FCttTtt1212AY.600.011257
S5L5FCttTtt1212AY.710.005701
S5L5FCttTtt1212AY.940.005312
S5L5FCttTtt1212AY.960.024896
S5L5FCttTtt1212B.1.1.2940.01519
S5L5FCttTtt1212B.1.1.3110.004298
S5L5FCttTtt1212B.1.1.4160.01086
S5L5FCttTtt1212B.1.177.440.006227
S5L5FCttTtt1212B.1.2100.025586
S5L5FCttTtt1212B.1.351.30.010517
S5L5FCttTtt1212B.1.5760.010879
S5L5FCttTtt1212B.410.096
S5L5FCttTtt1111A.20.00728
S5L5FCttTtt1111AY.900.007529
S5L5FCttTtt1111B.1.1.3480.008758
S5L5FCttTtt1111B.1.177.100.009658
S5L5FCttTtt1111B.1.6310.037037
S5L5FCttTtt1111B.310.041045
S5L5FCttTtt1010AY.116.10.003114
S5L5FCttTtt1010AY.190.011403
S5L5FCttTtt1010AY.46.20.006353
S5L5FCttTtt1010B.1.1.2070.01182
S5L5FCttTtt1010B.1.1.2690.013532
S5L5FCttTtt1010B.1.1.3970.022523
S5L5FCttTtt1010B.1.1260.012755
S5L5FCttTtt1010B.1.1490.034247
S5L5FCttTtt1010B.1.2390.01221
S5L5FCttTtt1010B.1.258.110.003964
S5L5FCttTtt1010B.1.3670.007924
S5L5FCttTtt1010B.1.4220.008123
S5L5FCttTtt1010B.1.4590.040816
S5L5FCttTtt1010B.1.4990.010504
S5L5FCttTtt1010B.1.930.009337
S5L5FCttTtt99AY.1080.009923
S5L5FCttTtt99AY.23.10.003756
S5L5FCttTtt99AY.550.008257
S5L5FCttTtt99AY.680.002464
S5L5FCttTtt99AY.880.007958
S5L5FCttTtt99B.1.1.1570.008219
S5L5FCttTtt99B.1.1.3330.009688
S5L5FCttTtt99B.1.1.4480.018293
S5L5FCttTtt99B.1.177.550.020979
S5L5FCttTtt99B.1.258.40.031034
S5L5FCttTtt99B.1.3460.011796
S5L5FCttTtt99B.1.466.10.064748
S5L5FCttTtt99B.1.6200.008515
S5L5FCttTtt88AY.320.00426
S5L5FCttTtt88AY.700.001668
S5L5FCttTtt88B.1.177.330.013158
S5L5FCttTtt88B.1.177.350.005529
S5L5FCttTtt88B.1.177.560.00534
S5L5FCttTtt88B.1.177.80.00602
S5L5FCttTtt88B.1.2980.016913
S5L5FCttTtt88B.1.36.310.014011
S5L5FCttTtt88B.1.3910.009019
S5L5FCttTtt88B.1.4710.021858
S5L5FCttTtt88B.1.5240.011252
S5L5FCttTtt88B.1.5970.037037
S5L5FCttTtt88B.1.6250.018824
S5L5FCttTtt88P.1.40.007812
S5L5FCttTtt77AH.11
S5L5FCttTtt77AY.220.014644
S5L5FCttTtt77AY.240.003017
S5L5FCttTtt77B.1.1.1960.04
S5L5FCttTtt77B.1.1.2040.021277
S5L5FCttTtt77B.1.1.830.01897
S5L5FCttTtt77B.1.1890.030043
S5L5FCttTtt77B.1.2060.00571
S5L5FCttTtt77B.1.221.30.005833
S5L5FCttTtt77B.1.2680.072917
S5L5FCttTtt77B.1.3570.066667
S5L5FCttTtt77B.1.4040.009115
S5L5FCttTtt77B.1.4480.018373
S5L5FCttTtt77B.1.5090.006061
S5L5FCttTtt77B.1.5390.122807
S5L5FCttTtt77B.1.5680.007778
S5L5FCttTtt77B.1.6360.04698
S5L5FCttTtt77B.1.6380.368421
S5L5FCttTtt77B.350.054688
S5L5FCttTtt77B.6.60.006222
S5L5FCttTtt77C.160.007423
S5L5FCttTtt77P.1.130.006289
S5L5FCttTtt77P.1.20.008092
S5L5FCttTtt66A.210.01662
S5L5FCttTtt66A.50.011538
S5L5FCttTtt66AY.100.00318
S5L5FCttTtt66AY.1090.004438
S5L5FCttTtt66AY.110.008032
S5L5FCttTtt66AY.380.002996
S5L5FCttTtt66AY.520.004886
S5L5FCttTtt66AY.990.006296
S5L5FCttTtt66AZ.30.009119
S5L5FCttTtt66B.1.1.1610.021201
S5L5FCttTtt66B.1.1.2370.032432
S5L5FCttTtt66B.1.1.2630.009346
S5L5FCttTtt66B.1.1.2910.004454
S5L5FCttTtt66B.1.1.2970.013423
S5L5FCttTtt66B.1.1.3050.023166
S5L5FCttTtt66B.1.1.3220.052632
S5L5FCttTtt66B.1.1.3740.014252
S5L5FCttTtt66B.1.1.3980.019355
S5L5FCttTtt66B.1.1.440.014458
S5L5FCttTtt66B.1.1.4640.008837
S5L5FCttTtt66B.1.1040.02214
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