CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L54S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S54L54SnonsyntTgtCg55510.92727321722-21724
S54L54SnonsyntTGtCT5530.054545521722-21724
S54L54SnonsyntTGtCA5510.018181821722-21724

Details of the mutation L54S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S54L54StTgtCg5155All0.00001
S54L54StTGtCT355All0.000001
S54L54StTGtCA155All0
S54L54StTgtCg1011AY.40.000016
S54L54StTGtCT111AY.40.000002
S54L54StTgtCg88B.1.1.70.000007
S54L54StTgtCg44AY.1020.000106
S54L54StTgtCg33AY.1200.000112
S54L54StTgtCg22AY.330.000134
S54L54StTGtCT12AY.34.10.00051
S54L54StTGtCA12AY.34.10.00051
S54L54StTgtCg22AY.430.000009
S54L54StTgtCg22AY.50.000041
S54L54StTgtCg22AY.610.00021
S54L54StTGtCT12AY.90.000068
S54L54StTgtCg12AY.90.000068
S54L54StTgtCg22B.1.10.000036
S54L54StTgtCg22B.1.617.20.000008
S54L54StTgtCg11AY.1100.000113
S54L54StTgtCg11AY.1170.000085
S54L54StTgtCg11AY.200.000039
S54L54StTgtCg11AY.250.000006
S54L54StTgtCg11AY.290.000016
S54L54StTgtCg11AY.4.20.000022
S54L54StTgtCg11AY.4.40.000409
S54L54StTgtCg11AY.860.00083
S54L54StTgtCg11AY.9.10.000084
S54L54StTgtCg11B.10.000009
S54L54StTgtCg11B.1.20.000009
S54L54StTgtCg11C.290.0625
S54L54StTgtCg11D.20.000075