CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 54 | L54F | nonsyn | ttG | ttT | 11608 | 10148 | 0.874225 | 21722-21724 | |
S | 54 | L54F | nonsyn | ttG | ttC | 11608 | 1460 | 0.125775 | 21722-21724 |
Details of the mutation L54F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 54 | L54F | ttG | ttT | 10148 | 11608 | All | 0.001941 |
S | 54 | L54F | ttG | ttC | 1460 | 11608 | All | 0.000279 |
S | 54 | L54F | ttG | ttC | 681 | 1258 | AY.4 | 0.00106 |
S | 54 | L54F | ttG | ttT | 577 | 1258 | AY.4 | 0.000898 |
S | 54 | L54F | ttG | ttT | 927 | 927 | B.1.1.333 | 0.997847 |
S | 54 | L54F | ttG | ttT | 687 | 774 | B.1.1.7 | 0.000615 |
S | 54 | L54F | ttG | ttC | 87 | 774 | B.1.1.7 | 0.000078 |
S | 54 | L54F | ttG | ttT | 753 | 753 | AY.4.3 | 0.633838 |
S | 54 | L54F | ttG | ttT | 724 | 724 | B.1.1.214 | 0.040151 |
S | 54 | L54F | ttG | ttT | 486 | 501 | B.1.1 | 0.008816 |
S | 54 | L54F | ttG | ttC | 15 | 501 | B.1.1 | 0.000272 |
S | 54 | L54F | ttG | ttT | 463 | 463 | B.1.305 | 0.995699 |
S | 54 | L54F | ttG | ttT | 463 | 463 | B.1.36.21 | 1 |
S | 54 | L54F | ttG | ttT | 274 | 394 | B.1.2 | 0.002413 |
S | 54 | L54F | ttG | ttC | 120 | 394 | B.1.2 | 0.001057 |
S | 54 | L54F | ttG | ttT | 349 | 359 | B.1 | 0.003197 |
S | 54 | L54F | ttG | ttC | 10 | 359 | B.1 | 0.000092 |
S | 54 | L54F | ttG | ttT | 349 | 349 | B.1.36.26 | 0.997143 |
S | 54 | L54F | ttG | ttT | 268 | 290 | B.1.617.2 | 0.001009 |
S | 54 | L54F | ttG | ttC | 22 | 290 | B.1.617.2 | 0.000083 |
S | 54 | L54F | ttG | ttT | 280 | 280 | B.1.1.351 | 0.782123 |
S | 54 | L54F | ttG | ttT | 229 | 251 | B.1.240 | 0.049364 |
S | 54 | L54F | ttG | ttC | 22 | 251 | B.1.240 | 0.004742 |
S | 54 | L54F | ttG | ttT | 233 | 235 | AY.29 | 0.003675 |
S | 54 | L54F | ttG | ttC | 2 | 235 | AY.29 | 0.000032 |
S | 54 | L54F | ttG | ttT | 134 | 216 | AY.43 | 0.000594 |
S | 54 | L54F | ttG | ttC | 82 | 216 | AY.43 | 0.000363 |
S | 54 | L54F | ttG | ttT | 204 | 208 | P.1 | 0.003214 |
S | 54 | L54F | ttG | ttC | 4 | 208 | P.1 | 0.000063 |
S | 54 | L54F | ttG | ttC | 100 | 182 | AY.44 | 0.000609 |
S | 54 | L54F | ttG | ttT | 82 | 182 | AY.44 | 0.000499 |
S | 54 | L54F | ttG | ttT | 145 | 162 | AY.25 | 0.000872 |
S | 54 | L54F | ttG | ttC | 17 | 162 | AY.25 | 0.000102 |
S | 54 | L54F | ttG | ttT | 153 | 154 | B.1.36 | 0.022323 |
S | 54 | L54F | ttG | ttC | 1 | 154 | B.1.36 | 0.000146 |
S | 54 | L54F | ttG | ttT | 119 | 123 | B.1.177 | 0.001567 |
S | 54 | L54F | ttG | ttC | 4 | 123 | B.1.177 | 0.000053 |
S | 54 | L54F | ttG | ttT | 117 | 118 | AY.42 | 0.004707 |
S | 54 | L54F | ttG | ttC | 1 | 118 | AY.42 | 0.00004 |
S | 54 | L54F | ttG | ttT | 94 | 113 | AY.103 | 0.000584 |
S | 54 | L54F | ttG | ttC | 19 | 113 | AY.103 | 0.000118 |
S | 54 | L54F | ttG | ttT | 105 | 105 | AS.1 | 1 |
S | 54 | L54F | ttG | ttT | 94 | 99 | AY.3 | 0.000935 |
S | 54 | L54F | ttG | ttC | 5 | 99 | AY.3 | 0.00005 |
S | 54 | L54F | ttG | ttT | 88 | 99 | B.1.160 | 0.002745 |
S | 54 | L54F | ttG | ttC | 11 | 99 | B.1.160 | 0.000343 |
S | 54 | L54F | ttG | ttT | 98 | 98 | B.1.351 | 0.002913 |
S | 54 | L54F | ttG | ttT | 94 | 97 | AY.33 | 0.006277 |
S | 54 | L54F | ttG | ttC | 3 | 97 | AY.33 | 0.0002 |
S | 54 | L54F | ttG | ttT | 94 | 94 | AY.22 | 0.196653 |
S | 54 | L54F | ttG | ttT | 84 | 84 | B.1.36.8 | 0.084 |
S | 54 | L54F | ttG | ttC | 61 | 61 | B.1.319 | 0.185976 |
S | 54 | L54F | ttG | ttC | 47 | 56 | AY.118 | 0.002944 |
S | 54 | L54F | ttG | ttT | 9 | 56 | AY.118 | 0.000564 |
S | 54 | L54F | ttG | ttT | 55 | 55 | B.1.113 | 0.859375 |
S | 54 | L54F | ttG | ttT | 37 | 50 | AY.4.2 | 0.000802 |
S | 54 | L54F | ttG | ttC | 13 | 50 | AY.4.2 | 0.000282 |
S | 54 | L54F | ttG | ttT | 50 | 50 | B.1.243 | 0.003479 |
S | 54 | L54F | ttG | ttT | 44 | 47 | AY.102 | 0.001167 |
S | 54 | L54F | ttG | ttC | 3 | 47 | AY.102 | 0.00008 |
S | 54 | L54F | ttG | ttT | 45 | 46 | AY.120 | 0.001673 |
S | 54 | L54F | ttG | ttC | 1 | 46 | AY.120 | 0.000037 |
S | 54 | L54F | ttG | ttT | 39 | 41 | AY.5 | 0.000805 |
S | 54 | L54F | ttG | ttC | 2 | 41 | AY.5 | 0.000041 |
S | 54 | L54F | ttG | ttT | 41 | 41 | B.1.234 | 0.00541 |
S | 54 | L54F | ttG | ttT | 32 | 36 | AY.39 | 0.000791 |
S | 54 | L54F | ttG | ttC | 4 | 36 | AY.39 | 0.000099 |
S | 54 | L54F | ttG | ttT | 32 | 32 | AY.54 | 0.003051 |
S | 54 | L54F | ttG | ttT | 26 | 30 | AY.20 | 0.00101 |
S | 54 | L54F | ttG | ttC | 4 | 30 | AY.20 | 0.000155 |
S | 54 | L54F | ttG | ttT | 27 | 27 | B.1.177.49 | 1 |
S | 54 | L54F | ttG | ttT | 24 | 25 | B.1.1.519 | 0.000953 |
S | 54 | L54F | ttG | ttC | 1 | 25 | B.1.1.519 | 0.00004 |
S | 54 | L54F | ttG | ttT | 21 | 24 | AY.14 | 0.001848 |
S | 54 | L54F | ttG | ttC | 3 | 24 | AY.14 | 0.000264 |
S | 54 | L54F | ttG | ttT | 17 | 24 | B.1.429 | 0.0004 |
S | 54 | L54F | ttG | ttC | 7 | 24 | B.1.429 | 0.000165 |
S | 54 | L54F | ttG | ttT | 23 | 23 | B.1.1.432 | 0.029114 |
S | 54 | L54F | ttG | ttT | 22 | 23 | B.1.369 | 0.006275 |
S | 54 | L54F | ttG | ttC | 1 | 23 | B.1.369 | 0.000285 |
S | 54 | L54F | ttG | ttT | 22 | 22 | AY.1 | 0.008706 |
S | 54 | L54F | ttG | ttT | 15 | 21 | AY.119 | 0.00053 |
S | 54 | L54F | ttG | ttC | 6 | 21 | AY.119 | 0.000212 |
S | 54 | L54F | ttG | ttT | 21 | 21 | B.1.526 | 0.000494 |
S | 54 | L54F | ttG | ttT | 18 | 20 | AY.120.1 | 0.005778 |
S | 54 | L54F | ttG | ttC | 2 | 20 | AY.120.1 | 0.000642 |
S | 54 | L54F | ttG | ttT | 18 | 19 | AY.26 | 0.00051 |
S | 54 | L54F | ttG | ttC | 1 | 19 | AY.26 | 0.000028 |
S | 54 | L54F | ttG | ttT | 17 | 18 | AY.34 | 0.001648 |
S | 54 | L54F | ttG | ttC | 1 | 18 | AY.34 | 0.000097 |
S | 54 | L54F | ttG | ttT | 13 | 17 | B.1.221 | 0.000923 |
S | 54 | L54F | ttG | ttC | 4 | 17 | B.1.221 | 0.000284 |
S | 54 | L54F | ttG | ttT | 17 | 17 | B.1.525 | 0.001924 |
S | 54 | L54F | ttG | ttT | 13 | 16 | AY.45 | 0.001582 |
S | 54 | L54F | ttG | ttC | 3 | 16 | AY.45 | 0.000365 |
S | 54 | L54F | ttG | ttT | 15 | 15 | AY.57 | 0.009843 |
S | 54 | L54F | ttG | ttT | 15 | 15 | B.1.1.291 | 0.011136 |
S | 54 | L54F | ttG | ttT | 13 | 13 | AY.100 | 0.000598 |
S | 54 | L54F | ttG | ttC | 10 | 12 | AY.111 | 0.001832 |
S | 54 | L54F | ttG | ttT | 2 | 12 | AY.111 | 0.000366 |
S | 54 | L54F | ttG | ttT | 9 | 12 | AY.75 | 0.000504 |
S | 54 | L54F | ttG | ttC | 3 | 12 | AY.75 | 0.000168 |
S | 54 | L54F | ttG | ttT | 12 | 12 | B.1.247 | 0.179104 |
S | 54 | L54F | ttG | ttT | 12 | 12 | B.1.258 | 0.000799 |
S | 54 | L54F | ttG | ttT | 11 | 11 | AY.36 | 0.00163 |
S | 54 | L54F | ttG | ttT | 11 | 11 | AY.7 | 0.002156 |
S | 54 | L54F | ttG | ttT | 11 | 11 | B.1.311 | 0.00302 |
S | 54 | L54F | ttG | ttT | 10 | 11 | B.1.621 | 0.000885 |
S | 54 | L54F | ttG | ttC | 1 | 11 | B.1.621 | 0.000089 |
S | 54 | L54F | ttG | ttT | 10 | 11 | P.1.7 | 0.003193 |
S | 54 | L54F | ttG | ttC | 1 | 11 | P.1.7 | 0.000319 |
S | 54 | L54F | ttG | ttT | 6 | 11 | P.2 | 0.00112 |
S | 54 | L54F | ttG | ttC | 5 | 11 | P.2 | 0.000933 |
S | 54 | L54F | ttG | ttT | 10 | 10 | AY.6 | 0.000411 |
S | 54 | L54F | ttG | ttT | 8 | 10 | AY.9.2 | 0.000294 |
S | 54 | L54F | ttG | ttC | 2 | 10 | AY.9.2 | 0.000073 |
S | 54 | L54F | ttG | ttT | 10 | 10 | B.1.1.28 | 0.003112 |
S | 54 | L54F | ttG | ttT | 9 | 10 | B.1.427 | 0.000454 |
S | 54 | L54F | ttG | ttC | 1 | 10 | B.1.427 | 0.00005 |
S | 54 | L54F | ttG | ttT | 10 | 10 | B.1.456 | 0.03268 |
S | 54 | L54F | ttG | ttT | 7 | 9 | AY.121 | 0.000947 |
S | 54 | L54F | ttG | ttC | 2 | 9 | AY.121 | 0.000271 |
S | 54 | L54F | ttG | ttT | 6 | 9 | AY.23 | 0.000418 |
S | 54 | L54F | ttG | ttC | 3 | 9 | AY.23 | 0.000209 |
S | 54 | L54F | ttG | ttT | 9 | 9 | AY.9 | 0.000608 |
S | 54 | L54F | ttG | ttT | 6 | 8 | AY.47 | 0.000187 |
S | 54 | L54F | ttG | ttC | 2 | 8 | AY.47 | 0.000062 |
S | 54 | L54F | ttG | ttT | 8 | 8 | B.1.1.207 | 0.009456 |
S | 54 | L54F | ttG | ttT | 8 | 8 | B.1.1.348 | 0.006369 |
S | 54 | L54F | ttG | ttT | 8 | 8 | B.1.1.372 | 0.00551 |
S | 54 | L54F | ttG | ttT | 6 | 7 | A.1 | 0.001691 |
S | 54 | L54F | ttG | ttC | 1 | 7 | A.1 | 0.000282 |
S | 54 | L54F | ttG | ttT | 6 | 7 | AY.98 | 0.000474 |
S | 54 | L54F | ttG | ttC | 1 | 7 | AY.98 | 0.000079 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.1.232 | 0.012704 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.1.284 | 0.000752 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.1.305 | 0.027027 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.1.70 | 0.002387 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.177.21 | 0.000535 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.250 | 0.101449 |
S | 54 | L54F | ttG | ttT | 7 | 7 | B.1.617.1 | 0.000903 |
S | 54 | L54F | ttG | ttC | 4 | 7 | C.37 | 0.000464 |
S | 54 | L54F | ttG | ttT | 3 | 7 | C.37 | 0.000348 |
S | 54 | L54F | ttG | ttT | 6 | 6 | A.2.5 | 0.002994 |
S | 54 | L54F | ttG | ttT | 6 | 6 | B | 0.000767 |
S | 54 | L54F | ttG | ttT | 6 | 6 | B.1.1.198 | 0.008811 |
S | 54 | L54F | ttG | ttT | 5 | 6 | B.1.596 | 0.000436 |
S | 54 | L54F | ttG | ttC | 1 | 6 | B.1.596 | 0.000087 |
S | 54 | L54F | ttG | ttC | 3 | 6 | P.1.14 | 0.000143 |
S | 54 | L54F | ttG | ttT | 3 | 6 | P.1.14 | 0.000143 |
S | 54 | L54F | ttG | ttT | 5 | 5 | AY.116 | 0.001434 |
S | 54 | L54F | ttG | ttC | 5 | 5 | AY.30 | 0.001979 |
S | 54 | L54F | ttG | ttT | 5 | 5 | AY.61 | 0.000524 |
S | 54 | L54F | ttG | ttT | 5 | 5 | AY.75.1 | 0.000902 |
S | 54 | L54F | ttG | ttT | 3 | 5 | AY.99.2 | 0.000276 |
S | 54 | L54F | ttG | ttC | 2 | 5 | AY.99.2 | 0.000184 |
S | 54 | L54F | ttG | ttT | 5 | 5 | B.1.1.369 | 0.002231 |
S | 54 | L54F | ttG | ttT | 5 | 5 | B.1.1.50 | 0.003394 |
S | 54 | L54F | ttG | ttT | 5 | 5 | B.1.111 | 0.005875 |
S | 54 | L54F | ttG | ttT | 5 | 5 | B.1.375 | 0.004098 |
S | 54 | L54F | ttG | ttC | 5 | 5 | B.1.507 | 0.05618 |
S | 54 | L54F | ttG | ttC | 2 | 4 | AD.2 | 0.000438 |
S | 54 | L54F | ttG | ttT | 2 | 4 | AD.2 | 0.000438 |
S | 54 | L54F | ttG | ttT | 4 | 4 | AY.106 | 0.00134 |
S | 54 | L54F | ttG | ttC | 3 | 4 | AY.110 | 0.000338 |
S | 54 | L54F | ttG | ttT | 1 | 4 | AY.110 | 0.000113 |
S | 54 | L54F | ttG | ttT | 4 | 4 | AY.113 | 0.00057 |
S | 54 | L54F | ttG | ttT | 2 | 4 | AY.39.1 | 0.000079 |
S | 54 | L54F | ttG | ttC | 2 | 4 | AY.39.1 | 0.000079 |
S | 54 | L54F | ttG | ttT | 4 | 4 | AY.4.5 | 0.00043 |
S | 54 | L54F | ttG | ttC | 2 | 4 | AY.7.1 | 0.000225 |
S | 54 | L54F | ttG | ttT | 2 | 4 | AY.7.1 | 0.000225 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.1.222 | 0.000816 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.1.226 | 0.023256 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.1.277 | 0.003035 |
S | 54 | L54F | ttG | ttC | 3 | 4 | B.1.1.306 | 0.001315 |
S | 54 | L54F | ttG | ttT | 1 | 4 | B.1.1.306 | 0.000438 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.1.33 | 0.001684 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.163 | 0.097561 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.232 | 0.002149 |
S | 54 | L54F | ttG | ttT | 3 | 4 | B.1.362 | 0.004622 |
S | 54 | L54F | ttG | ttC | 1 | 4 | B.1.362 | 0.001541 |
S | 54 | L54F | ttG | ttT | 4 | 4 | B.1.517 | 0.001708 |
S | 54 | L54F | ttG | ttT | 3 | 4 | D.2 | 0.000225 |
S | 54 | L54F | ttG | ttC | 1 | 4 | D.2 | 0.000075 |
S | 54 | L54F | ttG | ttT | 4 | 4 | Q.1 | 0.000505 |
S | 54 | L54F | ttG | ttC | 4 | 4 | W.1 | 0.034783 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.108 | 0.003308 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.109 | 0.002219 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.117 | 0.000254 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.13 | 0.000483 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.16 | 0.001139 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.29.1 | 0.000662 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.3.1 | 0.000256 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 54 | L54F | ttG | ttT | 2 | 3 | AY.46.6 | 0.000144 |
S | 54 | L54F | ttG | ttC | 1 | 3 | AY.46.6 | 0.000072 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.69 | 0.00056 |
S | 54 | L54F | ttG | ttT | 3 | 3 | AY.71 | 0.001425 |
S | 54 | L54F | ttG | ttT | 2 | 3 | AY.98.1 | 0.000097 |
S | 54 | L54F | ttG | ttC | 1 | 3 | AY.98.1 | 0.000048 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.1.1 | 0.00098 |
S | 54 | L54F | ttG | ttT | 2 | 3 | B.1.177.58 | 0.002663 |
S | 54 | L54F | ttG | ttC | 1 | 3 | B.1.177.58 | 0.001332 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.184 | 0.176471 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.210 | 0.006397 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.336 | 0.007317 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.404 | 0.003906 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.428 | 0.003061 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.465 | 0.011407 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.551 | 0.003871 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.568 | 0.003333 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.577 | 0.002062 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.619 | 0.002613 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.627 | 0.006061 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.1.637 | 0.000219 |
S | 54 | L54F | ttG | ttT | 3 | 3 | B.40 | 0.001093 |
S | 54 | L54F | ttG | ttT | 3 | 3 | C.16 | 0.003181 |
S | 54 | L54F | ttG | ttT | 3 | 3 | P.1.10 | 0.000808 |
S | 54 | L54F | ttG | ttT | 3 | 3 | P.1.12 | 0.001452 |
S | 54 | L54F | ttG | ttT | 3 | 3 | P.1.15 | 0.000697 |
S | 54 | L54F | ttG | ttT | 3 | 3 | R.1 | 0.00027 |
S | 54 | L54F | ttG | ttT | 2 | 2 | 0.111111 | |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.105 | 0.001286 |
S | 54 | L54F | ttG | ttT | 1 | 2 | AY.2 | 0.000356 |
S | 54 | L54F | ttG | ttC | 1 | 2 | AY.2 | 0.000356 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.46 | 0.000208 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.46.5 | 0.000397 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.5.4 | 0.000553 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.53 | 0.000575 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.74 | 0.000231 |
S | 54 | L54F | ttG | ttT | 1 | 2 | AY.88 | 0.000884 |
S | 54 | L54F | ttG | ttC | 1 | 2 | AY.88 | 0.000884 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.9.1 | 0.000167 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AY.92 | 0.000575 |
S | 54 | L54F | ttG | ttT | 2 | 2 | AZ.3 | 0.00304 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.101 | 0.02 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.189 | 0.003026 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.216 | 0.001781 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.220 | 0.003717 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.312 | 0.003824 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.318 | 0.000604 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.177.12 | 0.000303 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.177.33 | 0.003289 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.177.56 | 0.001335 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.177.73 | 0.001133 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.221.1 | 0.005814 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.265 | 0.002541 |
S | 54 | L54F | ttG | ttC | 1 | 2 | B.1.332 | 0.003497 |
S | 54 | L54F | ttG | ttT | 1 | 2 | B.1.332 | 0.003497 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.36.29 | 0.001035 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.372 | 0.021978 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.453 | 0.006472 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.471 | 0.005464 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.561 | 0.000794 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.609 | 0.000959 |
S | 54 | L54F | ttG | ttC | 2 | 2 | B.1.610 | 0.007092 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.1.628 | 0.000705 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.4.8 | 0.142857 |
S | 54 | L54F | ttG | ttT | 2 | 2 | B.49 | 0.1 |
S | 54 | L54F | ttG | ttC | 1 | 2 | C.36 | 0.000911 |
S | 54 | L54F | ttG | ttT | 1 | 2 | C.36 | 0.000911 |
S | 54 | L54F | ttG | ttT | 2 | 2 | C.36.3 | 0.001134 |
S | 54 | L54F | ttG | ttT | 2 | 2 | P.1.17 | 0.000324 |
S | 54 | L54F | ttG | ttT | 2 | 2 | P.1.2 | 0.002312 |
S | 54 | L54F | ttG | ttT | 1 | 1 | A | 0.000387 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AE.8 | 0.000489 |
S | 54 | L54F | ttG | ttC | 1 | 1 | AY.101 | 0.00049 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.11 | 0.001339 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.115 | 0.005208 |
S | 54 | L54F | ttG | ttC | 1 | 1 | AY.12 | 0.000316 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.21 | 0.001898 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.35 | 0.000233 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.38 | 0.000499 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.4.1 | 0.000737 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.4.4 | 0.000409 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.40 | 0.000964 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.41 | 0.000294 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.46.2 | 0.000635 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.49 | 0.003195 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.5.3 | 0.000337 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.60 | 0.000938 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.62 | 0.000436 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.64 | 0.000595 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.65 | 0.000533 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.67 | 0.000464 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.70 | 0.000209 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.72 | 0.001361 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.73 | 0.000665 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.76 | 0.004831 |
S | 54 | L54F | ttG | ttC | 1 | 1 | AY.79 | 0.001211 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.84 | 0.000437 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.87 | 0.000833 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.93 | 0.000273 |
S | 54 | L54F | ttG | ttC | 1 | 1 | AY.94 | 0.000443 |
S | 54 | L54F | ttG | ttT | 1 | 1 | AY.95 | 0.000761 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.161 | 0.003534 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.186 | 0.003436 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.196 | 0.005714 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.228 | 0.003049 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.244 | 0.015385 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.254 | 0.011236 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 54 | L54F | ttG | ttC | 1 | 1 | B.1.1.329 | 0.003846 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.345 | 0.043478 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.368 | 0.003086 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.448 | 0.002033 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.462 | 0.008621 |
S | 54 | L54F | ttG | ttC | 1 | 1 | B.1.1.486 | 0.001577 |
S | 54 | L54F | ttG | ttC | 1 | 1 | B.1.1.523 | 0.001563 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.526 | 0.003546 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.528 | 0.004808 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.54 | 0.003021 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.1.93 | 0.025641 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.134 | 0.005464 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.147 | 0.000756 |
S | 54 | L54F | ttG | ttC | 1 | 1 | B.1.160.15 | 0.00495 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.177.44 | 0.000519 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.177.76 | 0.002494 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.212 | 0.016667 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.237 | 0.004975 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.260 | 0.003344 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.263 | 0.047619 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.273 | 0.012987 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.276 | 0.016949 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.301 | 0.005917 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.36.16 | 0.001425 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.36.7 | 0.004 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.367 | 0.000792 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.389 | 0.001002 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.398 | 0.002976 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.416.1 | 0.001563 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.426 | 0.001009 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.438.1 | 0.000107 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.44 | 0.008333 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.441 | 0.009615 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.468 | 0.005714 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.503 | 0.002488 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.549 | 0.007194 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.550 | 0.013699 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.554 | 0.004405 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.570 | 0.002941 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.595 | 0.000261 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.598 | 0.016949 |
S | 54 | L54F | ttG | ttC | 1 | 1 | B.1.612 | 0.002653 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.623 | 0.000536 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.70 | 0.02439 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.1.9.5 | 0.005682 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.10 | 0.008264 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.11 | 0.005128 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.23 | 0.002924 |
S | 54 | L54F | ttG | ttT | 1 | 1 | B.4 | 0.002208 |
S | 54 | L54F | ttG | ttT | 1 | 1 | C.1.2 | 0.004255 |
S | 54 | L54F | ttG | ttC | 1 | 1 | N.9 | 0.005952 |
S | 54 | L54F | ttG | ttT | 1 | 1 | P.1.1 | 0.000318 |
S | 54 | L54F | ttG | ttC | 1 | 1 | Q.3 | 0.000145 |
S | 54 | L54F | ttG | ttT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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