CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L513F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S513L513FnonsynCttTtt2412380.98755223099-23101
S513L513FnonsynCtTTtC24130.012448123099-23101

Details of the mutation L513F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S513L513FCttTtt238241All0.000046
S513L513FCtTTtC3241All0.000001
S513L513FCttTtt4040B.1.1.70.000036
S513L513FCttTtt2323AY.40.000036
S513L513FCttTtt1414B.1.617.20.000053
S513L513FCttTtt1313AY.30.000129
S513L513FCttTtt1010AY.1030.000062
S513L513FCttTtt99AY.430.00004
S513L513FCttTtt99B.1.177.830.013333
S513L513FCttTtt88AY.290.000126
S513L513FCttTtt88AY.440.000049
S513L513FCttTtt77B.1.1770.000092
S513L513FCttTtt66B.10.000055
S513L513FCttTtt55AY.250.00003
S513L513FCtTTtC340.166667
S513L513FCttTtt140.055556
S513L513FCttTtt44AY.1000.000184
S513L513FCttTtt44AY.1170.000338
S513L513FCttTtt44B.1.20.000035
S513L513FCttTtt33AY.200.000117
S513L513FCttTtt33AY.260.000085
S513L513FCttTtt33AY.39.10.000119
S513L513FCttTtt33AY.450.000365
S513L513FCttTtt33D.20.000225
S513L513FCttTtt22AY.1180.000125
S513L513FCttTtt22AY.1210.000271
S513L513FCttTtt22AY.690.000373
S513L513FCttTtt22AY.710.00095
S513L513FCttTtt22AY.750.000112
S513L513FCttTtt22AY.9.10.000167
S513L513FCttTtt22B.1.3010.011834
S513L513FCttTtt22B.1.5250.000226
S513L513FCttTtt22B.1.5260.000047
S513L513FCttTtt11AE.40.043478
S513L513FCttTtt11AY.1020.000027
S513L513FCttTtt11AY.1040.001984
S513L513FCttTtt11AY.230.00007
S513L513FCttTtt11AY.270.000065
S513L513FCttTtt11AY.3.10.000085
S513L513FCttTtt11AY.340.000097
S513L513FCttTtt11AY.46.60.000072
S513L513FCttTtt11AY.470.000031
S513L513FCttTtt11AY.5.30.000337
S513L513FCttTtt11AY.5.40.000277
S513L513FCttTtt11AY.540.000095
S513L513FCttTtt11AY.60.000041
S513L513FCttTtt11AY.740.000116
S513L513FCttTtt11AY.870.000833
S513L513FCttTtt11AY.900.000684
S513L513FCttTtt11AY.930.000273
S513L513FCttTtt11AY.980.000079
S513L513FCttTtt11AY.99.20.000092
S513L513FCttTtt11B.1.10.000018
S513L513FCttTtt11B.1.1.1690.018182
S513L513FCttTtt11B.1.1.2300.009174
S513L513FCttTtt11B.1.1.2550.00303
S513L513FCttTtt11B.1.1.4160.000905
S513L513FCttTtt11B.1.160.200.008929
S513L513FCttTtt11B.1.177.600.000218
S513L513FCttTtt11B.1.177.730.000566
S513L513FCttTtt11B.1.2210.000071
S513L513FCttTtt11B.1.2340.000132
S513L513FCttTtt11B.1.3510.00003
S513L513FCttTtt11B.1.4290.000024
S513L513FCttTtt11B.1.5760.000907
S513L513FCttTtt11B.1.617.10.000129
S513L513FCttTtt11B.1.621.10.000506
S513L513FCttTtt11B.1.6370.000073
S513L513FCttTtt11B.400.000364
S513L513FCttTtt11C.260.007353
S513L513FCttTtt11P.10.000016
S513L513FCttTtt11Q.10.000126
S513L513FCttTtt11Q.60.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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