CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L296L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S296L296LsynctCctT11172107130.95891522448-22450
S296L296LsynctCctA111723030.027121422448-22450
S296L296LsynctCctG111721550.01387422448-22450
S296L296LsynCtCTtG1117210.000089509522448-22450

Details of the mutation L296L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S296L296LctCctT1071311172All0.002049
S296L296LctCctA30311172All0.000058
S296L296LctCctG15511172All0.00003
S296L296LCtCTtG111172All0
S296L296LctCctT23762399AY.40.003698
S296L296LctCctA162399AY.40.000025
S296L296LctCctG62399AY.40.000009
S296L296LCtCTtG12399AY.40.000002
S296L296LctCctT20892101B.1.1.70.00187
S296L296LctCctA102101B.1.1.70.000009
S296L296LctCctG22101B.1.1.70.000002
S296L296LctCctT436436B.1.1.2140.024179
S296L296LctCctT412421B.1.617.20.001551
S296L296LctCctA8421B.1.617.20.00003
S296L296LctCctG1421B.1.617.20.000004
S296L296LctCctA211370AY.1030.00131
S296L296LctCctT157370AY.1030.000975
S296L296LctCctG2370AY.1030.000012
S296L296LctCctT308316AY.440.001875
S296L296LctCctA8316AY.440.000049
S296L296LctCctT294310AY.250.001768
S296L296LctCctG12310AY.250.000072
S296L296LctCctA4310AY.250.000024
S296L296LctCctT291291B.1.1.4200.292757
S296L296LctCctT286286B.1.4290.006729
S296L296LctCctT237237B.1.5740.509677
S296L296LctCctT170177B.10.001557
S296L296LctCctG4177B.10.000037
S296L296LctCctA3177B.10.000027
S296L296LctCctT173173AY.1090.127959
S296L296LctCctT173173B.1.20.001523
S296L296LctCctT154154B.1.1.1760.067663
S296L296LctCctT150152AY.260.004247
S296L296LctCctA2152AY.260.000057
S296L296LctCctT143147B.1.10.002594
S296L296LctCctA2147B.1.10.000036
S296L296LctCctG2147B.1.10.000036
S296L296LctCctT131142AY.430.00058
S296L296LctCctA7142AY.430.000031
S296L296LctCctG4142AY.430.000018
S296L296LctCctT139142P.10.00219
S296L296LctCctA2142P.10.000032
S296L296LctCctG1142P.10.000016
S296L296LctCctT109113AY.30.001084
S296L296LctCctA3113AY.30.00003
S296L296LctCctG1113AY.30.00001
S296L296LctCctT108108B.1.5260.002538
S296L296LctCctG96100B.1.4000.041184
S296L296LctCctT4100B.1.4000.001716
S296L296LctCctT9090P.1.40.087891
S296L296LctCctT7272B.1.2190.679245
S296L296LctCctT6970B.1.1770.000909
S296L296LctCctG170B.1.1770.000013
S296L296LctCctT6868AY.420.002736
S296L296LctCctT6363AE.10.715909
S296L296LctCctT6161AY.240.026293
S296L296LctCctT5757P.1.130.051213
S296L296LctCctT5252AY.50.001074
S296L296LctCctT5050AY.1110.009158
S296L296LctCctT4045B.1.2430.002783
S296L296LctCctG545B.1.2430.000348
S296L296LctCctT4343AY.470.001338
S296L296LctCctT4343AY.540.0041
S296L296LctCctT4141AY.390.001013
S296L296LctCctT4141AY.610.004296
S296L296LctCctT4041B.1.1.5190.001588
S296L296LctCctA141B.1.1.5190.00004
S296L296LctCctT3738AY.1020.000981
S296L296LctCctA138AY.1020.000027
S296L296LctCctT3434AY.200.001321
S296L296LctCctT3333AY.39.10.001307
S296L296LctCctT3131B.1.1.1420.54386
S296L296LctCctT2929B.1.1.2940.036709
S296L296LctCctT2929P.1.70.009259
S296L296LctCctT2828B.1.1600.000873
S296L296LctCctT2626AY.1200.000967
S296L296LctCctT2626C.350.020124
S296L296LctCctT2525AY.1190.000883
S296L296LctCctT2525B.1.4270.001262
S296L296LctCctT2424AY.290.000379
S296L296LctCctT2424AY.46.40.003948
S296L296LctCctT2424B.1.1280.015248
S296L296LctCctT2424B.1.177.120.003641
S296L296LctCctT2424P.1.100.006467
S296L296LctCctT2323B.1.564.10.036278
S296L296LctCctT2122AY.330.001402
S296L296LctCctA122AY.330.000067
S296L296LctCctT2222B.1.2340.002903
S296L296LctCctT2022B.1.6210.00177
S296L296LctCctA222B.1.6210.000177
S296L296LctCctT2121B.1.6280.0074
S296L296LctCctT2020B.1.4970.006295
S296L296LctCctT1818B.1.6230.009657
S296L296LctCctT1818P.1.10.005718
S296L296LctCctT1818P.1.140.00086
S296L296LctCctT1818P.20.003359
S296L296LctCctT1717B.1.1.2040.051672
S296L296LctCctT1717B.1.2210.001208
S296L296LctCctT1515AY.130.002415
S296L296LctCctT1515AY.3.10.001279
S296L296LctCctT1515AY.860.012448
S296L296LctCctT1515AY.90.001014
S296L296LctCctT1515AY.980.001185
S296L296LctCctT1414AY.1000.000644
S296L296LctCctT1414AY.4.20.000304
S296L296LctCctT1414AY.4.50.001505
S296L296LctCctT1414AY.620.0061
S296L296LctCctT1414AY.670.0065
S296L296LctCctT1313AY.9.20.000477
S296L296LctCctT1012AY.1060.003349
S296L296LctCctG212AY.1060.00067
S296L296LctCctT812AY.1210.001083
S296L296LctCctG412AY.1210.000541
S296L296LctCctT1212B.1.2580.000799
S296L296LctCctT1212B.1.3510.000357
S296L296LctCctT1212B.1.438.10.001287
S296L296LctCctT1212B.1.5750.003641
S296L296LctCctT1212B.1.5820.005888
S296L296LctCctT1111B.1.1.2160.009795
S296L296LctCctT1111B.1.5250.001245
S296L296LctCctT711B.1.6370.000512
S296L296LctCctA411B.1.6370.000292
S296L296LctCctT1010AY.1180.000626
S296L296LctCctT1010AY.230.000697
S296L296LctCctT1010AY.450.001217
S296L296LctCctT910AY.98.10.000436
S296L296LctCctA110AY.98.10.000048
S296L296LctCctT1010B.1.1.2220.00204
S296L296LctCctT1010B.1.1.3180.003018
S296L296LctCctT99AY.750.000504
S296L296LctCctT99AY.9.10.000754
S296L296LctCctT99B.1.1.280.002801
S296L296LctCctT99B.1.160.160.008364
S296L296LctCctT99B.1.360.001313
S296L296LctCctT88AY.100.00424
S296L296LctCctT88AY.120.10.002568
S296L296LctCctT88AY.460.000833
S296L296LctCctT68AY.60.000247
S296L296LctCctA28AY.60.000082
S296L296LctCctT88B.1.5960.000697
S296L296LctCctT48D.20.0003
S296L296LctCctA48D.20.0003
S296L296LctCctT77AY.99.20.000645
S296L296LctCctT77B0.000895
S296L296LctCctT77B.1.1.100.007804
S296L296LctCctT67B.1.3960.004234
S296L296LctCctA17B.1.3960.000706
S296L296LctCctT66AY.1130.000854
S296L296LctCctT66AY.4.2.10.000894
S296L296LctCctT66AY.5.30.002024
S296L296LctCctT66B.1.1.330.002525
S296L296LctCctT66B.1.1.630.002315
S296L296LctCctT66B.1.36.290.003104
S296L296LctCctT46C.370.000464
S296L296LctCctA26C.370.000232
S296L296LctCctT56P.1.150.001162
S296L296LctCctA16P.1.150.000232
S296L296LctCctT66Q.40.002729
S296L296LctCctT66Q.80.000989
S296L296LctCctT55AM.10.555556
S296L296LctCctG55AY.1140.001156
S296L296LctCctT55AY.140.00044
S296L296LctCctT55AY.160.001898
S296L296LctCctT55AY.380.002496
S296L296LctCctT55B.1.1.10.001633
S296L296LctCctT55B.1.177.40.001055
S296L296LctCctT45B.1.617.10.000516
S296L296LctCctG15B.1.617.10.000129
S296L296LctCctT55R.10.00045
S296L296LctCctT44AY.16.10.00188
S296L296LctCctT44AY.270.000259
S296L296LctCctT44AY.29.10.000882
S296L296LctCctT44AY.320.00213
S296L296LctCctT44AY.34.10.00204
S296L296LctCctT44AY.46.60.000289
S296L296LctCctT44AY.700.000834
S296L296LctCctT44AY.790.004843
S296L296LctCctT44B.1.1.3060.001754
S296L296LctCctT44B.1.1.700.001364
S296L296LctCctT44B.1.177.770.002905
S296L296LctCctT44B.1.466.20.001565
S296L296LctCctT33AE.80.001467
S296L296LctCctT33AY.1080.003308
S296L296LctCctT33AY.1170.000254
S296L296LctCctT33AY.360.000445
S296L296LctCctT33AY.370.000948
S296L296LctCctT33AY.410.000882
S296L296LctCctT33AY.590.001589
S296L296LctCctT33AY.7.10.000338
S296L296LctCctT33AY.840.001312
S296L296LctCctT33AY.910.002191
S296L296LctCctT33AY.920.000862
S296L296LctCctT33B.1.1.1920.006928
S296L296LctCctT33B.1.1.250.001706
S296L296LctCctT33B.1.1.3440.032258
S296L296LctCctT33B.1.1.3620.016854
S296L296LctCctT33B.1.1.390.001529
S296L296LctCctT33B.1.1.410.018987
S296L296LctCctT33B.1.177.440.001557
S296L296LctCctT33B.1.177.70.000495
S296L296LctCctT33B.1.177.800.005736
S296L296LctCctT33B.1.177.810.000568
S296L296LctCctT33B.1.177.860.00055
S296L296LctCctT33B.1.2360.00616
S296L296LctCctT33B.1.2400.000647
S296L296LctCctT33B.1.258.170.000312
S296L296LctCctT33B.1.3800.019868
S296L296LctCctT33B.1.5170.001281
S296L296LctCctT33B.1.5680.003333
S296L296LctCctT33C.390.056604
S296L296LctCctT33P.1.90.014423
S296L296LctCctT33Q.10.000379
S296L296LctCctT33Q.30.000435
S296L296LctCctT22AT.10.010256
S296L296LctCctT22AY.1040.003968
S296L296LctCctT22AY.1050.001286
S296L296LctCctT22AY.1070.000932
S296L296LctCctT22AY.1160.000574
S296L296LctCctT22AY.116.10.000623
S296L296LctCctT22AY.190.002281
S296L296LctCctT22AY.300.000791
S296L296LctCctA12AY.340.000097
S296L296LctCctT12AY.340.000097
S296L296LctCctT22AY.46.50.000397
S296L296LctCctT22AY.520.001629
S296L296LctCctT22AY.550.001835
S296L296LctCctT22AY.600.001876
S296L296LctCctT22AY.690.000373
S296L296LctCctT12AY.70.000196
S296L296LctCctA12AY.70.000196
S296L296LctCctT22AY.75.10.000361
S296L296LctCctT22AY.880.001768
S296L296LctCctT22AY.930.000546
S296L296LctCctT22B.1.1.3120.003824
S296L296LctCctT22B.1.1.3170.000823
S296L296LctCctT22B.1.1.830.00542
S296L296LctCctT22B.1.1260.002551
S296L296LctCctT22B.1.160.70.004158
S296L296LctCctT22B.1.177.570.000562
S296L296LctCctT22B.1.177.600.000437
S296L296LctCctT22B.1.177.750.002081
S296L296LctCctT22B.1.177.80.001505
S296L296LctCctT22B.1.177.870.001456
S296L296LctCctT22B.1.3110.000549
S296L296LctCctT22B.1.3360.004878
S296L296LctCctT22B.1.36.180.00084
S296L296LctCctT22B.1.3610.002577
S296L296LctCctA22B.1.3980.005952
S296L296LctCctT22B.1.4700.002809
S296L296LctCctT22B.1.4780.023529
S296L296LctCctG12B.1.5460.003704
S296L296LctCctT12B.1.5460.003704
S296L296LctCctT22B.1.5610.000794
S296L296LctCctG12B.1.5950.000261
S296L296LctCctT12B.1.5950.000261
S296L296LctCctT22B.1.595.10.011696
S296L296LctCctT22B.1.6000.011696
S296L296LctCctT22B.1.6090.000959
S296L296LctCctT22B.1.6190.001742
S296L296LctCctT22B.1.9.50.011364
S296L296LctCctT22B.1.910.004149
S296L296LctCctT22C.360.001821
S296L296LctCctA11A0.000387
S296L296LctCctT11A.23.10.000704
S296L296LctCctT11A.250.018182
S296L296LctCctT11A.270.001656
S296L296LctCctT11AY.120.000316
S296L296LctCctT11AY.120.20.001285
S296L296LctCctT11AY.150.002222
S296L296LctCctT11AY.20.000356
S296L296LctCctT11AY.23.10.000417
S296L296LctCctT11AY.350.000233
S296L296LctCctT11AY.4.30.000842
S296L296LctCctT11AY.46.10.001027
S296L296LctCctT11AY.5.40.000277
S296L296LctCctT11AY.640.000595
S296L296LctCctT11AY.650.000533
S296L296LctCctT11AY.680.000274
S296L296LctCctT11AY.710.000475
S296L296LctCctT11AY.830.001724
S296L296LctCctT11AY.870.000833
S296L296LctCctT11AY.940.000443
S296L296LctCctT11AY.950.000761
S296L296LctCctT11B.1.1.1010.01
S296L296LctCctT11B.1.1.1620.029412
S296L296LctCctT11B.1.1.1640.005155
S296L296LctCctT11B.1.1.1740.003378
S296L296LctCctT11B.1.1.2180.007692
S296L296LctCctT11B.1.1.2260.005814
S296L296LctCctT11B.1.1.2310.003096
S296L296LctCctT11B.1.1.2320.001815
S296L296LctCctT11B.1.1.2540.011236
S296L296LctCctT11B.1.1.2610.008621
S296L296LctCctT11B.1.1.2840.000107
S296L296LctCctT11B.1.1.2910.000742
S296L296LctCctT11B.1.1.3010.001179
S296L296LctCctT11B.1.1.3020.002075
S296L296LctCctG11B.1.1.3040.002809
S296L296LctCctT11B.1.1.3160.000925
S296L296LctCctT11B.1.1.3260.001761
S296L296LctCctT11B.1.1.3290.003846
S296L296LctCctT11B.1.1.3330.001076
S296L296LctCctT11B.1.1.3480.000796
S296L296LctCctT11B.1.1.3510.002793
S296L296LctCctT11B.1.1.4340.000349
S296L296LctCctT11B.1.1.4400.011765
S296L296LctCctT11B.1.1.4850.016667
S296L296LctCctT11B.1.1.5230.001563
S296L296LctCctT11B.1.1.5240.020833
S296L296LctCctT11B.1.1.80.003584
S296L296LctCctT11B.1.1080.005814
S296L296LctCctT11B.1.110.30.000718
S296L296LctCctT11B.1.160.310.008065
S296L296LctCctT11B.1.177.150.000631
S296L296LctCctT11B.1.177.210.000076
S296L296LctCctT11B.1.177.240.001295
S296L296LctCctT11B.1.177.410.0025
S296L296LctCctT11B.1.177.420.000894
S296L296LctCctT11B.1.177.460.000918
S296L296LctCctT11B.1.177.690.001484
S296L296LctCctT11B.1.1800.05
S296L296LctCctT11B.1.2100.002132
S296L296LctCctT11B.1.2140.003663
S296L296LctCctT11B.1.214.20.0006
S296L296LctCctT11B.1.221.30.000833
S296L296LctCctT11B.1.230.006061
S296L296LctCctG11B.1.2320.000537
S296L296LctCctT11B.1.2350.002519
S296L296LctCctT11B.1.2390.001221
S296L296LctCctT11B.1.2410.000812
S296L296LctCctT11B.1.258.40.003448
S296L296LctCctT11B.1.2640.012346
S296L296LctCctA11B.1.2790.000514
S296L296LctCctT11B.1.2980.002114
S296L296LctCctT11B.1.3200.001245
S296L296LctCctT11B.1.3240.001605
S296L296LctCctT11B.1.3290.000608
S296L296LctCctT11B.1.3350.010309
S296L296LctCctT11B.1.3410.022727
S296L296LctCctT11B.1.350.008475
S296L296LctCctT11B.1.36.10.00114
S296L296LctCctT11B.1.36.270.000763
S296L296LctCctT11B.1.36.310.001751
S296L296LctCctT11B.1.36.360.000602
S296L296LctCctT11B.1.36.390.002217
S296L296LctCctT11B.1.3690.000285
S296L296LctCctT11B.1.3890.001002
S296L296LctCctT11B.1.4110.003704
S296L296LctCctT11B.1.4220.000812
S296L296LctCctT11B.1.4240.008065
S296L296LctCctT11B.1.4480.002625
S296L296LctCctT11B.1.4590.004082
S296L296LctCctG11B.1.4600.017857
S296L296LctCctT11B.1.4680.005714
S296L296LctCctT11B.1.5240.001406
S296L296LctCctT11B.1.5580.004566
S296L296LctCctT11B.1.5660.019231
S296L296LctCctT11B.1.5760.000907
S296L296LctCctT11B.1.5800.004065
S296L296LctCctT11B.1.5880.00091
S296L296LctCctT11B.1.6180.004032
S296L296LctCctT11B.1.6200.000946
S296L296LctCctT11B.1.6270.00202
S296L296LctCctT11B.1.80.001972
S296L296LctCctG11B.310.003731
S296L296LctCctT11B.330.021277
S296L296LctCctA11B.60.00091
S296L296LctCctT11C.36.30.000567
S296L296LctCctT11L.20.011364
S296L296LctCctT11N.50.001767
S296L296LctCctT11P.1.160.000374
S296L296LctCctT11P.1.17.10.000875
S296L296LctCctT11P.1.60.001946
S296L296LctCctT11P.50.013699

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.