CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L249L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S249L249LsynTtgCtg4072640.64864922307-22309
S249L249LsynttGttA4071390.34152322307-22309
S249L249LsynTtGCtA40720.00491422307-22309
S249L249LsynTtGCtT40720.00491422307-22309

Details of the mutation L249L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S249L249LTtgCtg264407All0.00005
S249L249LttGttA139407All0.000027
S249L249LTtGCtA2407All0
S249L249LTtGCtT2407All0
S249L249LTtgCtg8290AY.430.000363
S249L249LttGttA890AY.430.000035
S249L249LTtgCtg7277B.1.617.20.000271
S249L249LttGttA577B.1.617.20.000019
S249L249LTtgCtg3636C.350.027864
S249L249LTtgCtg2626B.1.10.000472
S249L249LttGttA2626B.1.400.509804
S249L249LttGttA1919AY.140.001672
S249L249LttGttA918B.1.1.70.000008
S249L249LTtgCtg918B.1.1.70.000008
S249L249LttGttA59C.370.00058
S249L249LTtGCtA29C.370.000232
S249L249LTtGCtT29C.370.000232
S249L249LttGttA58AY.390.000124
S249L249LTtgCtg38AY.390.000074
S249L249LTtgCtg77AY.1160.002007
S249L249LttGttA77AY.250.000042
S249L249LttGttA46AY.440.000024
S249L249LTtgCtg26AY.440.000012
S249L249LttGttA66AY.46.60.000433
S249L249LttGttA55P.10.000079
S249L249LttGttA34AY.1210.000406
S249L249LTtgCtg14AY.1210.000135
S249L249LttGttA44AY.40.000006
S249L249LTtgCtg33AY.1150.015625
S249L249LttGttA33AY.260.000085
S249L249LTtgCtg33B.1.177.330.004934
S249L249LTtgCtg23B.1.20.000018
S249L249LttGttA13B.1.20.000009
S249L249LttGttA33B.1.258.170.000312
S249L249LttGttA12AY.1030.000006
S249L249LTtgCtg12AY.1030.000006
S249L249LTtgCtg22AY.1140.000462
S249L249LTtgCtg12AY.1180.000063
S249L249LttGttA12AY.1180.000063
S249L249LTtgCtg22AY.1190.000071
S249L249LTtgCtg22AY.50.000041
S249L249LttGttA12AY.540.000095
S249L249LTtgCtg12AY.540.000095
S249L249LttGttA22AY.610.00021
S249L249LttGttA12B.10.000009
S249L249LTtgCtg12B.10.000009
S249L249LttGttA22B.1.1.2140.000111
S249L249LttGttA22B.1.1.280.000622
S249L249LttGttA22R.10.00018
S249L249LTtgCtg11AY.1110.000183
S249L249LttGttA11AY.200.000039
S249L249LttGttA11AY.230.00007
S249L249LttGttA11AY.30.00001
S249L249LttGttA11AY.4.20.000022
S249L249LTtgCtg11AY.450.000122
S249L249LTtgCtg11AY.5.40.000277
S249L249LttGttA11AY.740.000116
S249L249LttGttA11AY.750.000056
S249L249LttGttA11AY.9.10.000084
S249L249LttGttA11AY.9.20.000037
S249L249LttGttA11B.1.1.3440.010753
S249L249LTtgCtg11B.1.1.990.02381
S249L249LttGttA11B.1.160.70.002079
S249L249LTtgCtg11B.1.177.60.000977
S249L249LttGttA11B.1.177.870.000728
S249L249LttGttA11B.1.2580.000067
S249L249LTtgCtg11B.1.4270.00005
S249L249LttGttA11B.1.4290.000024
S249L249LttGttA11B.1.5610.000397
S249L249LTtgCtg11B.1.5680.001111
S249L249LTtgCtg11Q.70.001111