CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L244del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S244L244deldelTTA---30813081122292-22294

Details of the mutation L244del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S244L244delTTA---30813081All0.000589
S244L244delTTA---409409B.1.1.70.000366
S244L244delTTA---351351P.30.559809
S244L244delTTA---313313AY.30.003113
S244L244delTTA---218218C.1.20.92766
S244L244delTTA---176176B.1.6300.921466
S244L244delTTA---169169AY.40.000263
S244L244delTTA---139139B.1.617.20.000523
S244L244delTTA---7777AY.4.20.00167
S244L244delTTA---7272AY.440.000438
S244L244delTTA---5959B.10.00054
S244L244delTTA---5858AY.430.000257
S244L244delTTA---5555B.1.3510.001635
S244L244delTTA---5151AY.250.000307
S244L244delTTA---4646AY.1200.00171
S244L244delTTA---4646B.1.10.000834
S244L244delTTA---4444AY.1030.000273
S244L244delTTA---3737B.1.4270.001868
S244L244delTTA---3737P.10.000583
S244L244delTTA---3131AY.290.000489
S244L244delTTA---2525B.1.20.00022
S244L244delTTA---2424B.1.1770.000316
S244L244delTTA---2222C.400.611111
S244L244delTTA---2020B.1.351.30.017528
S244L244delTTA---1919AY.690.003547
S244L244delTTA---1818AY.360.002668
S244L244delTTA---1818C.36.3.10.048913
S244L244delTTA---1414AY.1020.000371
S244L244delTTA---1414B.1.5260.000329
S244L244delTTA---1313B.1.1.2970.029083
S244L244delTTA---1313B.1.214.20.007794
S244L244delTTA---1212AY.200.000466
S244L244delTTA---1212AY.390.000297
S244L244delTTA---1212AY.460.001249
S244L244delTTA---1212AY.470.000373
S244L244delTTA---1212B.1.1600.000374
S244L244delTTA---1212C.370.001393
S244L244delTTA---1010B.1.5250.001132
S244L244delTTA---1010B.1.6370.000731
S244L244delTTA---1010P.1.150.002323
S244L244delTTA---99AY.1190.000318
S244L244delTTA---99AY.9.20.000331
S244L244delTTA---88AY.3.10.000682
S244L244delTTA---88AY.99.20.000737
S244L244delTTA---88B.1.4290.000188
S244L244delTTA---88B.1.5960.000697
S244L244delTTA---88P.1.40.007812
S244L244delTTA---77AY.1000.000322
S244L244delTTA---77AY.650.003731
S244L244delTTA---77B.1.3690.001997
S244L244delTTA---66AY.340.000582
S244L244delTTA---66AY.450.00073
S244L244delTTA---66AY.50.000124
S244L244delTTA---66AY.610.000629
S244L244delTTA---66B.1.6210.000531
S244L244delTTA---55AY.1010.002452
S244L244delTTA---55AY.330.000334
S244L244delTTA---55AY.46.40.000823
S244L244delTTA---55AY.740.000578
S244L244delTTA---55B.1.1.5190.000199
S244L244delTTA---55P.50.068493
S244L244delTTA---55Q.10.000632
S244L244delTTA---44AY.1130.00057
S244L244delTTA---44AY.260.000113
S244L244delTTA---44AY.9.10.000335
S244L244delTTA---44AY.950.003044
S244L244delTTA---44B.1.4090.003125
S244L244delTTA---44D.20.0003
S244L244delTTA---44P.1.10.001271
S244L244delTTA---44R.10.00036
S244L244delTTA---33AY.270.000194
S244L244delTTA---33AY.320.001597
S244L244delTTA---33AY.380.001498
S244L244delTTA---33AY.4.50.000322
S244L244delTTA---33AY.5.30.001012
S244L244delTTA---33AY.540.000286
S244L244delTTA---33B0.000383
S244L244delTTA---33B.1.1.2940.003797
S244L244delTTA---33B.1.1.500.002037
S244L244delTTA---33B.1.177.600.000655
S244L244delTTA---33B.1.177.860.00055
S244L244delTTA---33B.1.2210.000213
S244L244delTTA---33B.1.2580.0002
S244L244delTTA---33B.1.360.000438
S244L244delTTA---33B.1.4330.009585
S244L244delTTA---33Q.20.00184
S244L244delTTA---33Q.80.000495
S244L244delTTA---220.111111
S244L244delTTA---22A0.000774
S244L244delTTA---22AB.10.016393
S244L244delTTA---22AY.1180.000125
S244L244delTTA---22AY.130.000322
S244L244delTTA---22AY.370.000632
S244L244delTTA---22AY.4.40.000818
S244L244delTTA---22AY.420.00008
S244L244delTTA---22AY.46.60.000144
S244L244delTTA---22AY.5.40.000553
S244L244delTTA---22AY.60.000082
S244L244delTTA---22AY.70.000392
S244L244delTTA---22AY.750.000112
S244L244delTTA---22AY.920.000575
S244L244delTTA---22B.1.1.3180.000604
S244L244delTTA---22B.1.1.4320.002532
S244L244delTTA---22B.1.1.4640.002946
S244L244delTTA---22B.1.1.5240.041667
S244L244delTTA---22B.1.1.950.039216
S244L244delTTA---22B.1.177.120.000303
S244L244delTTA---22B.1.177.160.001329
S244L244delTTA---22B.1.177.810.000379
S244L244delTTA---22B.1.3320.006993
S244L244delTTA---22B.1.4040.002604
S244L244delTTA---22B.1.4160.002538
S244L244delTTA---22B.1.5680.002222
S244L244delTTA---22B.1.5950.000522
S244L244delTTA---22B.1.6190.001742
S244L244delTTA---22P.1.140.000096
S244L244delTTA---22P.1.160.000748
S244L244delTTA---22P.40.007605
S244L244delTTA---22Q.30.00029
S244L244delTTA---22Q.40.00091
S244L244delTTA---11A.20.000662
S244L244delTTA---11A.2.50.000499
S244L244delTTA---11A.23.10.000704
S244L244delTTA---11A.30.002096
S244L244delTTA---11AA.10.007246
S244L244delTTA---11AY.1110.000183
S244L244delTTA---11AY.1160.000287
S244L244delTTA---11AY.1170.000085
S244L244delTTA---11AY.120.20.001285
S244L244delTTA---11AY.160.00038
S244L244delTTA---11AY.230.00007
S244L244delTTA---11AY.29.10.000221
S244L244delTTA---11AY.300.000396
S244L244delTTA---11AY.350.000233
S244L244delTTA---11AY.640.000595
S244L244delTTA---11AY.670.000464
S244L244delTTA---11AY.700.000209
S244L244delTTA---11AY.75.10.00018
S244L244delTTA---11AY.820.001357
S244L244delTTA---11AY.840.000437
S244L244delTTA---11AY.880.000884
S244L244delTTA---11AY.900.000684
S244L244delTTA---11AY.980.000079
S244L244delTTA---11B.1.1.10.000327
S244L244delTTA---11B.1.1.1530.001095
S244L244delTTA---11B.1.1.1590.004673
S244L244delTTA---11B.1.1.1650.015385
S244L244delTTA---11B.1.1.2140.000055
S244L244delTTA---11B.1.1.2770.000759
S244L244delTTA---11B.1.1.280.000311
S244L244delTTA---11B.1.1.2800.003086
S244L244delTTA---11B.1.1.2980.000862
S244L244delTTA---11B.1.1.3060.000438
S244L244delTTA---11B.1.1.3110.000358
S244L244delTTA---11B.1.1.3220.008772
S244L244delTTA---11B.1.1.330.000421
S244L244delTTA---11B.1.1.3520.03125
S244L244delTTA---11B.1.1.3680.003086
S244L244delTTA---11B.1.1.370.000193
S244L244delTTA---11B.1.1.3740.002375
S244L244delTTA---11B.1.1.3890.006061
S244L244delTTA---11B.1.1.390.00051
S244L244delTTA---11B.1.1.4020.011111
S244L244delTTA---11B.1.1.4200.001006
S244L244delTTA---11B.1.1.440.00241
S244L244delTTA---11B.1.1.5260.003546
S244L244delTTA---11B.1.1.530.013699
S244L244delTTA---11B.1.1470.000756
S244L244delTTA---11B.1.160.290.004219
S244L244delTTA---11B.1.177.170.000821
S244L244delTTA---11B.1.177.210.000076
S244L244delTTA---11B.1.177.240.001295
S244L244delTTA---11B.1.177.690.001484
S244L244delTTA---11B.1.177.70.000165
S244L244delTTA---11B.1.177.870.000728
S244L244delTTA---11B.1.2130.014925
S244L244delTTA---11B.1.2200.01087
S244L244delTTA---11B.1.2340.000132
S244L244delTTA---11B.1.2370.004975
S244L244delTTA---11B.1.2410.000812
S244L244delTTA---11B.1.2430.00007
S244L244delTTA---11B.1.258.140.00098
S244L244delTTA---11B.1.258.170.000104
S244L244delTTA---11B.1.36.170.000494
S244L244delTTA---11B.1.3890.001002
S244L244delTTA---11B.1.4000.000429
S244L244delTTA---11B.1.4240.008065
S244L244delTTA---11B.1.4390.005917
S244L244delTTA---11B.1.4450.011765
S244L244delTTA---11B.1.4530.003236
S244L244delTTA---11B.1.466.20.000391
S244L244delTTA---11B.1.4680.005714
S244L244delTTA---11B.1.4700.001404
S244L244delTTA---11B.1.4990.00105
S244L244delTTA---11B.1.5170.000427
S244L244delTTA---11B.1.5240.001406
S244L244delTTA---11B.1.5510.00129
S244L244delTTA---11B.1.5610.000397
S244L244delTTA---11B.1.5760.000907
S244L244delTTA---11B.1.5890.007576
S244L244delTTA---11B.1.596.10.009346
S244L244delTTA---11B.1.5990.00365
S244L244delTTA---11B.1.6040.017241
S244L244delTTA---11B.1.6060.006024
S244L244delTTA---11B.1.617.10.000129
S244L244delTTA---11B.1.6200.000946
S244L244delTTA---11B.1.621.10.000506
S244L244delTTA---11B.400.000364
S244L244delTTA---11C.10.002392
S244L244delTTA---11C.160.00106
S244L244delTTA---11C.300.001727
S244L244delTTA---11C.350.000774
S244L244delTTA---11C.40.01
S244L244delTTA---11N.50.001767
S244L244delTTA---11P.1.20.001156
S244L244delTTA---11P.1.60.001946
S244L244delTTA---11P.20.000187
S244L244delTTA---11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.