CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L242F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S242L242FnonsynCttTtt9099080.998922286-22288
S242L242FnonsynCtTTtC90910.0011001122286-22288

Details of the mutation L242F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S242L242FCttTtt908909All0.000174
S242L242FCtTTtC1909All0
S242L242FCttTtt137137AY.1210.018539
S242L242FCttTtt132132B.1.1.70.000118
S242L242FCttTtt9595B.1.617.20.000358
S242L242FCttTtt7777P.10.001213
S242L242FCttTtt6666AY.920.01896
S242L242FCttTtt3737C.370.004294
S242L242FCttTtt3333B.1.20.000291
S242L242FCttTtt2929AY.40.000045
S242L242FCttTtt2727B.1.1770.000356
S242L242FCttTtt2626B.1.4700.036517
S242L242FCttTtt2525AY.250.00015
S242L242FCttTtt1818B.10.000165
S242L242FCttTtt1717B.1.1.1660.566667
S242L242FCttTtt1414AY.440.000085
S242L242FCttTtt1313AY.1030.000081
S242L242FCttTtt1111B.1.3910.012401
S242L242FCttTtt1010AY.430.000044
S242L242FCttTtt99AY.1020.000239
S242L242FCttTtt88AY.390.000198
S242L242FCttTtt77B.1.1.5190.000278
S242L242FCttTtt66AY.230.000418
S242L242FCttTtt55B.1.10.000091
S242L242FCttTtt44AY.1000.000184
S242L242FCttTtt44AY.1100.000451
S242L242FCttTtt44AY.50.000083
S242L242FCttTtt33AY.200.000117
S242L242FCttTtt33AY.470.000093
S242L242FCttTtt33B.1.3960.002117
S242L242FCttTtt33B.1.4270.000151
S242L242FCttTtt33B.1.4290.000071
S242L242FCttTtt33B.1.5170.001281
S242L242FCttTtt33P.1.120.001452
S242L242FCtTTtC120.055556
S242L242FCttTtt120.055556
S242L242FCttTtt22AY.1200.000074
S242L242FCttTtt22AY.30.00002
S242L242FCttTtt22AY.420.00008
S242L242FCttTtt22B.1.1600.000062
S242L242FCttTtt22B.1.2100.004264
S242L242FCttTtt22B.1.2210.000142
S242L242FCttTtt22B.1.2580.000133
S242L242FCttTtt22B.1.466.20.000782
S242L242FCttTtt22B.1.5640.000852
S242L242FCttTtt22B.1.617.10.000258
S242L242FCttTtt22B.1.6370.000146
S242L242FCttTtt22D.20.00015
S242L242FCttTtt22P.1.140.000096
S242L242FCttTtt22P.1.170.000324
S242L242FCttTtt22Q.80.00033
S242L242FCttTtt11A.2.50.000499
S242L242FCttTtt11A.2.5.10.004808
S242L242FCttTtt11AY.10.000396
S242L242FCttTtt11AY.260.000028
S242L242FCttTtt11AY.4.20.000022
S242L242FCttTtt11AY.4.50.000107
S242L242FCttTtt11AY.410.000294
S242L242FCttTtt11AY.450.000122
S242L242FCttTtt11AY.46.20.000635
S242L242FCttTtt11AY.46.60.000072
S242L242FCttTtt11AY.500.000799
S242L242FCttTtt11AY.540.000095
S242L242FCttTtt11AY.610.000105
S242L242FCttTtt11AY.650.000533
S242L242FCttTtt11AY.740.000116
S242L242FCttTtt11AY.850.000427
S242L242FCttTtt11AY.9.10.000084
S242L242FCttTtt11AY.9.20.000037
S242L242FCttTtt11AY.960.002075
S242L242FCttTtt11B.1.1.1410.002012
S242L242FCttTtt11B.1.1.3720.000689
S242L242FCttTtt11B.1.1.390.00051
S242L242FCttTtt11B.1.1.4340.000349
S242L242FCttTtt11B.1.1.500.000679
S242L242FCttTtt11B.1.177.180.00116
S242L242FCttTtt11B.1.177.540.000606
S242L242FCttTtt11B.1.177.830.001481
S242L242FCttTtt11B.1.2320.000537
S242L242FCttTtt11B.1.2430.00007
S242L242FCttTtt11B.1.243.10.022222
S242L242FCttTtt11B.1.3200.001245
S242L242FCttTtt11B.1.3690.000285
S242L242FCttTtt11B.1.4150.014286
S242L242FCttTtt11B.1.4240.008065
S242L242FCttTtt11B.1.499.10.111111
S242L242FCttTtt11B.1.5250.000113
S242L242FCttTtt11B.1.5260.000024
S242L242FCttTtt11B.1.5960.000087
S242L242FCttTtt11B.1.6200.000946
S242L242FCttTtt11B.40.002208
S242L242FCttTtt11B.600.015873
S242L242FCttTtt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.