CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = L189F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S189L189FnonsynCttTtt11334113320.99982422127-22129
S189L189FnonsynCtTTtC1133420.0001764622127-22129

Details of the mutation L189F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S189L189FCttTtt1133211334All0.002167
S189L189FCtTTtC211334All0
S189L189FCttTtt95329532B.1.258.170.991058
S189L189FCttTtt288288B.1.258.40.993103
S189L189FCttTtt243243AY.250.001462
S189L189FCttTtt178178AY.90.012032
S189L189FCttTtt151151B.10.001383
S189L189FCttTtt143143B.1.2580.009516
S189L189FCttTtt114114B.1.258.51
S189L189FCttTtt9393AY.40.000145
S189L189FCttTtt6363B.1.1.4320.079747
S189L189FCttTtt5353B.1.1.70.000047
S189L189FCttTtt4343B.1.20.000379
S189L189FCttTtt4141B.1.258.230.97619
S189L189FCttTtt3131B.1.1770.000408
S189L189FCttTtt3131B.1.6090.014861
S189L189FCttTtt2929B.1.617.20.000109
S189L189FCttTtt2828P.10.000441
S189L189FCttTtt2525B.1.10.000454
S189L189FCttTtt2222B.1.3110.006041
S189L189FCttTtt1919B.1.258.240.204301
S189L189FCttTtt1414AY.440.000085
S189L189FCttTtt1414B.1.3670.011094
S189L189FCttTtt1111AY.430.000049
S189L189FCttTtt88B0.001022
S189L189FCttTtt88B.1.1.5190.000318
S189L189FCttTtt77B.4.10.132075
S189L189FCttTtt66AE.80.002934
S189L189FCttTtt66B.1.1600.000187
S189L189FCttTtt55B.1.2210.000355
S189L189FCttTtt55B.1.3750.004098
S189L189FCttTtt44AY.1030.000025
S189L189FCttTtt44AY.420.000161
S189L189FCttTtt44AY.80.002424
S189L189FCttTtt44AY.950.003044
S189L189FCttTtt44B.1.177.540.002426
S189L189FCttTtt44P.1.120.001936
S189L189FCttTtt33AY.130.000483
S189L189FCttTtt33AY.410.000882
S189L189FCttTtt33AY.98.10.000145
S189L189FCttTtt33B.1.36.380.004926
S189L189FCttTtt33B.1.4970.000944
S189L189FCttTtt33P.1.10.000953
S189L189FCtTTtC120.055556
S189L189FCttTtt120.055556
S189L189FCttTtt22AY.330.000134
S189L189FCttTtt22AY.390.000049
S189L189FCttTtt22AY.5.30.000675
S189L189FCttTtt22AY.70.000392
S189L189FCtTTtC12AY.980.000079
S189L189FCttTtt12AY.980.000079
S189L189FCttTtt22B.1.1.2200.003717
S189L189FCttTtt22B.1.1.2220.000408
S189L189FCttTtt22B.1.1.4090.005666
S189L189FCttTtt22B.1.177.730.001133
S189L189FCttTtt22B.1.360.000292
S189L189FCttTtt22B.1.36.80.002
S189L189FCttTtt22B.1.4290.000047
S189L189FCttTtt22C.370.000232
S189L189FCttTtt22P.1.20.002312
S189L189FCttTtt11A.2.50.000499
S189L189FCttTtt11AY.1160.000287
S189L189FCttTtt11AY.230.00007
S189L189FCttTtt11AY.4.20.000022
S189L189FCttTtt11AY.4.50.000107
S189L189FCttTtt11AY.46.40.000165
S189L189FCttTtt11AY.50.000021
S189L189FCttTtt11AY.520.000814
S189L189FCttTtt11AY.540.000095
S189L189FCttTtt11AY.750.000056
S189L189FCttTtt11AY.75.10.00018
S189L189FCttTtt11AY.9.20.000037
S189L189FCttTtt11B.1.1.1980.001468
S189L189FCttTtt11B.1.1.2630.001558
S189L189FCttTtt11B.1.1.2840.000107
S189L189FCttTtt11B.1.1.3170.000412
S189L189FCttTtt11B.1.1.3180.000302
S189L189FCttTtt11B.1.1.3480.000796
S189L189FCttTtt11B.1.1.4450.037037
S189L189FCttTtt11B.1.1.700.000341
S189L189FCttTtt11B.1.1390.000733
S189L189FCttTtt11B.1.1570.002985
S189L189FCttTtt11B.1.177.120.000152
S189L189FCttTtt11B.1.177.330.001645
S189L189FCttTtt11B.1.177.40.000211
S189L189FCttTtt11B.1.177.520.001757
S189L189FCttTtt11B.1.177.70.000165
S189L189FCttTtt11B.1.230.006061
S189L189FCttTtt11B.1.2320.000537
S189L189FCttTtt11B.1.2370.004975
S189L189FCttTtt11B.1.2430.00007
S189L189FCttTtt11B.1.3280.03125
S189L189FCttTtt11B.1.3560.001727
S189L189FCttTtt11B.1.36.260.002857
S189L189FCttTtt11B.1.3620.001541
S189L189FCttTtt11B.1.3910.001127
S189L189FCttTtt11B.1.4700.001404
S189L189FCttTtt11B.1.5240.001406
S189L189FCttTtt11B.1.5260.000024
S189L189FCttTtt11B.1.5750.000303
S189L189FCttTtt11B.1.5900.004545
S189L189FCttTtt11B.1.5990.00365
S189L189FCttTtt11B.1.6190.000871
S189L189FCttTtt11B.1.6230.000536
S189L189FCttTtt11B.1.6270.00202
S189L189FCttTtt11C.130.025641
S189L189FCttTtt11D.20.000075
S189L189FCttTtt11P.1.140.000048
S189L189FCttTtt11P.1.150.000232
S189L189FCttTtt11P.1.160.000374
S189L189FCttTtt11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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