CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = K417N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S417K417NnonsynaaGaaT45693456710.99951922811-22813
S417K417NnonsynaaGaaC45693220.00048147422811-22813

Details of the mutation K417N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S417K417NaaGaaT4567145693All0.008735
S417K417NaaGaaC2245693All0.000004
S417K417NaaGaaT3142431425B.1.3510.934126
S417K417NaaGaaC131425B.1.3510.00003
S417K417NaaGaaT32793279B.1.351.20.992133
S417K417NaaGaaT28082808AY.21
S417K417NaaGaaT25272527AY.11
S417K417NaaGaaT16621662B.1.351.50.996403
S417K417NaaGaaT11241124B.1.351.30.985101
S417K417NaaGaaT756756B.1.6210.06692
S417K417NaaGaaT360362B.1.617.20.001356
S417K417NaaGaaC2362B.1.617.20.000008
S417K417NaaGaaT341341B.10.003123
S417K417NaaGaaT150158B.1.1.70.000134
S417K417NaaGaaC8158B.1.1.70.000007
S417K417NaaGaaT128128B.1.5540.563877
S417K417NaaGaaT105105AY.1030.000652
S417K417NaaGaaT9798AY.250.000583
S417K417NaaGaaC198AY.250.000006
S417K417NaaGaaT7979AY.440.000481
S417K417NaaGaaT5151AY.430.000226
S417K417NaaGaaT5151B.1.10.000925
S417K417NaaGaaT3636AY.690.00672
S417K417NaaGaaT3434B.1.1700.146552
S417K417NaaGaaT2828AY.560.044944
S417K417NaaGaaT2525B.1.351.10.961538
S417K417NaaGaaT2222AY.40.000034
S417K417NaaGaaT2222AY.710.010451
S417K417NaaGaaT1919AY.1170.001606
S417K417NaaGaaT1919AY.620.008279
S417K417NaaGaaT1616AY.1200.000595
S417K417NaaGaaT1616B0.002045
S417K417NaaGaaT1515AY.380.007489
S417K417NaaGaaT1515AY.470.000467
S417K417NaaGaaT1515AY.50.00031
S417K417NaaGaaT1515B.1.4290.000353
S417K417NaaGaaT1414AY.260.000396
S417K417NaaGaaT1313AY.390.000321
S417K417NaaGaaT1313B.1.6200.012299
S417K417NaaGaaT1112AY.30.000109
S417K417NaaGaaC112AY.30.00001
S417K417NaaGaaT1111B.1.177.730.006229
S417K417NaaGaaT1111B.1.4700.015449
S417K417NaaGaaT1010AY.750.00056
S417K417NaaGaaT1010AY.820.013569
S417K417NaaGaaT1010B.1.6360.067114
S417K417NaaGaaT99AY.200.00035
S417K417NaaGaaT89B.1.20.00007
S417K417NaaGaaC19B.1.20.000009
S417K417NaaGaaT88B.1.2580.000532
S417K417NaaGaaT77AY.330.000467
S417K417NaaGaaT77B.1.5950.001827
S417K417NaaGaaT66AY.1190.000212
S417K417NaaGaaT66AY.230.000418
S417K417NaaGaaT66AY.370.001896
S417K417NaaGaaT66AY.650.003198
S417K417NaaGaaT66B.1.1.280.001867
S417K417NaaGaaT66B.1.1770.000079
S417K417NaaGaaT66B.1.258.170.000624
S417K417NaaGaaT55AY.290.000079
S417K417NaaGaaT55AY.850.002136
S417K417NaaGaaT55B.1.1.3890.030303
S417K417NaaGaaT55B.1.6090.002397
S417K417NaaGaaT45B.1.6370.000292
S417K417NaaGaaC15B.1.6370.000073
S417K417NaaGaaT44AY.1020.000106
S417K417NaaGaaT44AY.1180.000251
S417K417NaaGaaT44AY.160.001519
S417K417NaaGaaT44AY.270.000259
S417K417NaaGaaT44AY.4.50.00043
S417K417NaaGaaT44AY.5.30.00135
S417K417NaaGaaT44AY.520.003257
S417K417NaaGaaT44AY.590.002119
S417K417NaaGaaT44AY.610.000419
S417K417NaaGaaT44AY.880.003537
S417K417NaaGaaT44AY.920.001149
S417K417NaaGaaT44AY.980.000316
S417K417NaaGaaC44B.1.1.3290.015385
S417K417NaaGaaT44B.1.1.4320.005063
S417K417NaaGaaT44P.30.00638
S417K417NaaGaaT44P.50.054795
S417K417NaaGaaT33A0.001161
S417K417NaaGaaT33AY.1050.001929
S417K417NaaGaaT33AY.1060.001005
S417K417NaaGaaT33AY.1130.000427
S417K417NaaGaaT33AY.1160.00086
S417K417NaaGaaT33AY.190.003421
S417K417NaaGaaT33AY.340.000291
S417K417NaaGaaT33AY.450.000365
S417K417NaaGaaT33AY.540.000286
S417K417NaaGaaT33AY.840.001312
S417K417NaaGaaT33AY.990.003148
S417K417NaaGaaT33B.1.1.3060.001315
S417K417NaaGaaT33B.1.1.3720.002066
S417K417NaaGaaT23B.1.5260.000047
S417K417NaaGaaC13B.1.5260.000024
S417K417NaaGaaT22AU.20.004843
S417K417NaaGaaT22AY.120.2.10.000997
S417K417NaaGaaT22AY.1210.000271
S417K417NaaGaaT22AY.130.000322
S417K417NaaGaaT22AY.420.00008
S417K417NaaGaaT22AY.46.40.000329
S417K417NaaGaaT22AY.5.40.000553
S417K417NaaGaaT22AY.600.001876
S417K417NaaGaaT22AY.630.000774
S417K417NaaGaaT22AY.670.000929
S417K417NaaGaaT22AY.70.000392
S417K417NaaGaaT22AY.730.001331
S417K417NaaGaaT22AY.790.002421
S417K417NaaGaaT22AY.860.00166
S417K417NaaGaaT22AY.940.000885
S417K417NaaGaaT22AY.99.20.000184
S417K417NaaGaaT22B.1.1.2160.001781
S417K417NaaGaaT22B.1.1.2220.000408
S417K417NaaGaaT12B.1.1.2690.001353
S417K417NaaGaaC12B.1.1.2690.001353
S417K417NaaGaaT22B.1.1.3750.02381
S417K417NaaGaaT22B.1.177.520.003515
S417K417NaaGaaT22B.1.177.860.000367
S417K417NaaGaaT22B.1.2210.000142
S417K417NaaGaaT22B.1.3670.001585
S417K417NaaGaaT22B.1.5960.000174
S417K417NaaGaaT22B.1.6230.001073
S417K417NaaGaaT22B.1.6260.011429
S417K417NaaGaaT22B.1.6340.006849
S417K417NaaGaaT22Q.30.00029
S417K417NaaGaaT11AT.10.005128
S417K417NaaGaaT11AY.100.00053
S417K417NaaGaaT11AY.1080.001103
S417K417NaaGaaT11AY.1100.000113
S417K417NaaGaaT11AY.1140.000231
S417K417NaaGaaT11AY.120.000316
S417K417NaaGaaT11AY.120.10.000321
S417K417NaaGaaT11AY.210.001898
S417K417NaaGaaT11AY.220.002092
S417K417NaaGaaT11AY.280.00189
S417K417NaaGaaT11AY.320.000532
S417K417NaaGaaT11AY.39.10.00004
S417K417NaaGaaT11AY.4.30.000842
S417K417NaaGaaT11AY.400.000964
S417K417NaaGaaT11AY.410.000294
S417K417NaaGaaT11AY.460.000104
S417K417NaaGaaT11AY.510.000909
S417K417NaaGaaT11AY.530.000288
S417K417NaaGaaT11AY.550.000917
S417K417NaaGaaT11AY.7.10.000113
S417K417NaaGaaT11AY.75.10.00018
S417K417NaaGaaC11AY.770.001127
S417K417NaaGaaT11AY.780.001541
S417K417NaaGaaT11AY.870.000833
S417K417NaaGaaT11AY.90.000068
S417K417NaaGaaT11AY.9.20.000037
S417K417NaaGaaT11AY.910.00073
S417K417NaaGaaT11AY.98.10.000048
S417K417NaaGaaT11B.1.1.10.000327
S417K417NaaGaaT11B.1.1.1190.034483
S417K417NaaGaaT11B.1.1.2030.016949
S417K417NaaGaaT11B.1.1.250.000569
S417K417NaaGaaT11B.1.1.2770.000759
S417K417NaaGaaT11B.1.1.3180.000302
S417K417NaaGaaT11B.1.1.3540.004386
S417K417NaaGaaT11B.1.1.4090.002833
S417K417NaaGaaT11B.1.1.4220.045455
S417K417NaaGaaT11B.1.1.440.00241
S417K417NaaGaaT11B.1.1.5190.00004
S417K417NaaGaaT11B.1.1.5250.005464
S417K417NaaGaaT11B.1.177.310.011494
S417K417NaaGaaT11B.1.177.70.000165
S417K417NaaGaaT11B.1.1790.003759
S417K417NaaGaaT11B.1.214.30.007143
S417K417NaaGaaT11B.1.2790.000514
S417K417NaaGaaT11B.1.3110.000275
S417K417NaaGaaT11B.1.3200.001245
S417K417NaaGaaT11B.1.36.290.000517
S417K417NaaGaaT11B.1.3750.00082
S417K417NaaGaaT11B.1.3990.001934
S417K417NaaGaaT11B.1.4270.00005
S417K417NaaGaaT11B.1.4410.009615
S417K417NaaGaaT11B.1.5240.001406
S417K417NaaGaaT11B.1.5250.000113
S417K417NaaGaaT11B.1.5990.00365
S417K417NaaGaaT11B.1.6010.030303
S417K417NaaGaaT11B.1.617.30.002985
S417K417NaaGaaT11B.1.6190.000871
S417K417NaaGaaT11B.1.621.10.000506
S417K417NaaGaaT11B.1.780.008547
S417K417NaaGaaT11B.270.015385
S417K417NaaGaaT11B.60.00091
S417K417NaaGaaT11C.160.00106
S417K417NaaGaaT11C.36.30.000567
S417K417NaaGaaT11C.370.000116
S417K417NaaGaaT11C.390.018868
S417K417NaaGaaT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.