CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = K1073N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1073K1073NnonsynaaGaaT768545230.58854924779-24781
S1073K1073NnonsynaaGaaC768531620.41145124779-24781

Details of the mutation K1073N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1073K1073NaaGaaT45237685All0.000865
S1073K1073NaaGaaC31627685All0.000605
S1073K1073NaaGaaC18261834AY.390.045123
S1073K1073NaaGaaT81834AY.390.000198
S1073K1073NaaGaaC646646AY.39.20.995378
S1073K1073NaaGaaT578578C.300.998273
S1073K1073NaaGaaT488531AY.40.00076
S1073K1073NaaGaaC43531AY.40.000067
S1073K1073NaaGaaT464489B.1.1.70.000415
S1073K1073NaaGaaC25489B.1.1.70.000022
S1073K1073NaaGaaC209395B.1.617.20.000787
S1073K1073NaaGaaT186395B.1.617.20.0007
S1073K1073NaaGaaT213213B.1.1.2401
S1073K1073NaaGaaT201201B.1.1.1940.99505
S1073K1073NaaGaaT133169AY.430.000589
S1073K1073NaaGaaC36169AY.430.000159
S1073K1073NaaGaaT164164B.1.3110.04503
S1073K1073NaaGaaT149149C.30.11
S1073K1073NaaGaaT114130AY.440.000694
S1073K1073NaaGaaC16130AY.440.000097
S1073K1073NaaGaaT119123AY.30.001184
S1073K1073NaaGaaC4123AY.30.00004
S1073K1073NaaGaaT109111AY.290.001719
S1073K1073NaaGaaC2111AY.290.000032
S1073K1073NaaGaaT8795B.10.000797
S1073K1073NaaGaaC895B.10.000073
S1073K1073NaaGaaT8293B.1.20.000722
S1073K1073NaaGaaC1193B.1.20.000097
S1073K1073NaaGaaT8989AY.1130.012673
S1073K1073NaaGaaT6986P.10.001087
S1073K1073NaaGaaC1786P.10.000268
S1073K1073NaaGaaT6479B.1.1770.000843
S1073K1073NaaGaaC1579B.1.1770.000198
S1073K1073NaaGaaT7575B.1.351.20.022693
S1073K1073NaaGaaT4369AY.250.000259
S1073K1073NaaGaaC2669AY.250.000156
S1073K1073NaaGaaT6364B.1.5260.001481
S1073K1073NaaGaaC164B.1.5260.000024
S1073K1073NaaGaaT4758AY.1030.000292
S1073K1073NaaGaaC1158AY.1030.000068
S1073K1073NaaGaaT5656C.311
S1073K1073NaaGaaC4043B.1.2430.002783
S1073K1073NaaGaaT343B.1.2430.000209
S1073K1073NaaGaaC3541AY.39.10.001386
S1073K1073NaaGaaT641AY.39.10.000238
S1073K1073NaaGaaT2738B.1.10.00049
S1073K1073NaaGaaC1138B.1.10.0002
S1073K1073NaaGaaT3636AY.340.003491
S1073K1073NaaGaaT3434B.1.1.2840.003652
S1073K1073NaaGaaT2233B.1.4270.001111
S1073K1073NaaGaaC1133B.1.4270.000555
S1073K1073NaaGaaT3131AY.4.50.003332
S1073K1073NaaGaaT2729AY.46.60.00195
S1073K1073NaaGaaC229AY.46.60.000144
S1073K1073NaaGaaC2029B.1.4290.000471
S1073K1073NaaGaaT929B.1.4290.000212
S1073K1073NaaGaaT2126AY.1000.000966
S1073K1073NaaGaaC526AY.1000.00023
S1073K1073NaaGaaT2626AY.1060.008707
S1073K1073NaaGaaT2626B.1.1600.000811
S1073K1073NaaGaaT2323AY.46.50.004563
S1073K1073NaaGaaT1723P.1.140.000813
S1073K1073NaaGaaC623P.1.140.000287
S1073K1073NaaGaaT2222AJ.11
S1073K1073NaaGaaC1121AY.1020.000292
S1073K1073NaaGaaT1021AY.1020.000265
S1073K1073NaaGaaT1220AY.50.000248
S1073K1073NaaGaaC820AY.50.000165
S1073K1073NaaGaaT1717B.1.2400.003665
S1073K1073NaaGaaT1617B.1.360.002334
S1073K1073NaaGaaC117B.1.360.000146
S1073K1073NaaGaaT1116AY.530.003163
S1073K1073NaaGaaC516AY.530.001438
S1073K1073NaaGaaT1416B.1.1.5190.000556
S1073K1073NaaGaaC216B.1.1.5190.000079
S1073K1073NaaGaaT1616B.1.3190.04878
S1073K1073NaaGaaT1616B.1.564.10.025237
S1073K1073NaaGaaT1314AY.460.001353
S1073K1073NaaGaaC114AY.460.000104
S1073K1073NaaGaaT1313B.1.36.170.006423
S1073K1073NaaGaaT1313B.1.3990.025145
S1073K1073NaaGaaC812AY.870.006661
S1073K1073NaaGaaT412AY.870.003331
S1073K1073NaaGaaT711B.1.177.730.003964
S1073K1073NaaGaaC411B.1.177.730.002265
S1073K1073NaaGaaT1111B.1.2340.001451
S1073K1073NaaGaaT1111B.1.3510.000327
S1073K1073NaaGaaT1111B.1.3690.003137
S1073K1073NaaGaaT1111B.1.5680.012222
S1073K1073NaaGaaT1111C.160.011665
S1073K1073NaaGaaT1011C.370.001161
S1073K1073NaaGaaC111C.370.000116
S1073K1073NaaGaaT1010AY.1180.000626
S1073K1073NaaGaaT910AY.620.003922
S1073K1073NaaGaaC110AY.620.000436
S1073K1073NaaGaaT1010B.1.2390.01221
S1073K1073NaaGaaC69AY.1190.000212
S1073K1073NaaGaaT39AY.1190.000106
S1073K1073NaaGaaT59AY.230.000349
S1073K1073NaaGaaC49AY.230.000279
S1073K1073NaaGaaT89AY.260.000226
S1073K1073NaaGaaC19AY.260.000028
S1073K1073NaaGaaT99AY.4.20.000195
S1073K1073NaaGaaT79B.1.2580.000466
S1073K1073NaaGaaC29B.1.2580.000133
S1073K1073NaaGaaT58AY.1200.000186
S1073K1073NaaGaaC38AY.1200.000112
S1073K1073NaaGaaT48AY.420.000161
S1073K1073NaaGaaC48AY.420.000161
S1073K1073NaaGaaT67AY.200.000233
S1073K1073NaaGaaC17AY.200.000039
S1073K1073NaaGaaT77AY.330.000467
S1073K1073NaaGaaT77AY.740.00081
S1073K1073NaaGaaC77B.1.1.1920.016166
S1073K1073NaaGaaT77B.1.160.320.030043
S1073K1073NaaGaaT77B.1.2360.014374
S1073K1073NaaGaaT77B.1.4700.009831
S1073K1073NaaGaaT77B.1.5610.002779
S1073K1073NaaGaaT77C.36.30.003971
S1073K1073NaaGaaT66AY.140.000528
S1073K1073NaaGaaT56AY.610.000524
S1073K1073NaaGaaC16AY.610.000105
S1073K1073NaaGaaT56AY.9.20.000184
S1073K1073NaaGaaC16AY.9.20.000037
S1073K1073NaaGaaT66B.1.1.10.00196
S1073K1073NaaGaaT35A.2.50.001497
S1073K1073NaaGaaC25A.2.50.000998
S1073K1073NaaGaaC35AY.1100.000338
S1073K1073NaaGaaT25AY.1100.000225
S1073K1073NaaGaaT45AY.1170.000338
S1073K1073NaaGaaC15AY.1170.000085
S1073K1073NaaGaaT35B.1.177.860.00055
S1073K1073NaaGaaC25B.1.177.860.000367
S1073K1073NaaGaaT55B.1.36.330.037879
S1073K1073NaaGaaT55C.180.012953
S1073K1073NaaGaaT45Q.10.000505
S1073K1073NaaGaaC15Q.10.000126
S1073K1073NaaGaaT34AY.1050.001929
S1073K1073NaaGaaC14AY.1050.000643
S1073K1073NaaGaaT44AY.1110.000733
S1073K1073NaaGaaT34AY.1140.000693
S1073K1073NaaGaaC14AY.1140.000231
S1073K1073NaaGaaT44AY.120.001264
S1073K1073NaaGaaT44AY.1210.000541
S1073K1073NaaGaaC44AY.160.001519
S1073K1073NaaGaaT34AY.16.10.00141
S1073K1073NaaGaaC14AY.16.10.00047
S1073K1073NaaGaaT24AY.240.000862
S1073K1073NaaGaaC24AY.240.000862
S1073K1073NaaGaaT44AY.350.000932
S1073K1073NaaGaaC24AY.450.000243
S1073K1073NaaGaaT24AY.450.000243
S1073K1073NaaGaaT24AY.750.000112
S1073K1073NaaGaaC24AY.750.000112
S1073K1073NaaGaaT44AY.98.10.000194
S1073K1073NaaGaaT44B.1.1.700.001364
S1073K1073NaaGaaT44B.1.177.540.002426
S1073K1073NaaGaaT44B.1.36.290.002069
S1073K1073NaaGaaT44B.1.5640.001704
S1073K1073NaaGaaT23AY.10.000791
S1073K1073NaaGaaC13AY.10.000396
S1073K1073NaaGaaC23AY.360.000296
S1073K1073NaaGaaT13AY.360.000148
S1073K1073NaaGaaT23AY.410.000588
S1073K1073NaaGaaC13AY.410.000294
S1073K1073NaaGaaT23AY.5.30.000675
S1073K1073NaaGaaC13AY.5.30.000337
S1073K1073NaaGaaT23AY.540.000191
S1073K1073NaaGaaC13AY.540.000095
S1073K1073NaaGaaT33AY.850.001282
S1073K1073NaaGaaT33AY.9.10.000251
S1073K1073NaaGaaT23AY.980.000158
S1073K1073NaaGaaC13AY.980.000079
S1073K1073NaaGaaT23AY.99.20.000184
S1073K1073NaaGaaC13AY.99.20.000092
S1073K1073NaaGaaT33B.1.1.1890.004539
S1073K1073NaaGaaT33B.1.1.2220.000612
S1073K1073NaaGaaT33B.1.1.2770.002276
S1073K1073NaaGaaT33B.1.1.4480.006098
S1073K1073NaaGaaT33B.1.177.570.000843
S1073K1073NaaGaaT33B.1.5960.000261
S1073K1073NaaGaaC33B.1.6090.001438
S1073K1073NaaGaaT33B.1.6370.000219
S1073K1073NaaGaaT23D.20.00015
S1073K1073NaaGaaC13D.20.000075
S1073K1073NaaGaaT33L.30.010638
S1073K1073NaaGaaT22A0.000774
S1073K1073NaaGaaC12AY.1070.000466
S1073K1073NaaGaaT12AY.1070.000466
S1073K1073NaaGaaC12AY.1080.001103
S1073K1073NaaGaaT12AY.1080.001103
S1073K1073NaaGaaT22AY.270.000129
S1073K1073NaaGaaT12AY.3.10.000085
S1073K1073NaaGaaC12AY.3.10.000085
S1073K1073NaaGaaT22AY.300.000791
S1073K1073NaaGaaT12AY.470.000031
S1073K1073NaaGaaC12AY.470.000031
S1073K1073NaaGaaC12AY.60.000041
S1073K1073NaaGaaT12AY.60.000041
S1073K1073NaaGaaT22AY.690.000373
S1073K1073NaaGaaT22AY.75.10.000361
S1073K1073NaaGaaT22AY.90.000135
S1073K1073NaaGaaT12AY.920.000287
S1073K1073NaaGaaC12AY.920.000287
S1073K1073NaaGaaT22B.1.1.3720.001377
S1073K1073NaaGaaT22B.1.1.4010.133333
S1073K1073NaaGaaT22B.1.1.4320.002532
S1073K1073NaaGaaT22B.1.1.500.001358
S1073K1073NaaGaaT22B.1.177.520.003515
S1073K1073NaaGaaC22B.1.2320.001075
S1073K1073NaaGaaT22B.1.3060.011429
S1073K1073NaaGaaT22B.1.3370.011173
S1073K1073NaaGaaC22B.1.36.160.002849
S1073K1073NaaGaaT22B.1.36.280.011494
S1073K1073NaaGaaT12B.1.3910.001127
S1073K1073NaaGaaC12B.1.3910.001127
S1073K1073NaaGaaT22B.1.438.10.000215
S1073K1073NaaGaaT22B.1.466.20.000782
S1073K1073NaaGaaT22B.1.5580.009132
S1073K1073NaaGaaC22B.290.007018
S1073K1073NaaGaaT22C.80.008929
S1073K1073NaaGaaT22P.70.008734
S1073K1073NaaGaaT22R.10.00018
S1073K1073NaaGaaT11A.20.000662
S1073K1073NaaGaaC11A.2.40.003367
S1073K1073NaaGaaC11A.23.10.000704
S1073K1073NaaGaaT11A.280.002646
S1073K1073NaaGaaT11AY.100.00053
S1073K1073NaaGaaC11AY.1040.001984
S1073K1073NaaGaaT11AY.1150.005208
S1073K1073NaaGaaT11AY.1160.000287
S1073K1073NaaGaaT11AY.130.000161
S1073K1073NaaGaaT11AY.34.10.00051
S1073K1073NaaGaaT11AY.4.2.10.000149
S1073K1073NaaGaaT11AY.400.000964
S1073K1073NaaGaaT11AY.46.10.001027
S1073K1073NaaGaaT11AY.46.20.000635
S1073K1073NaaGaaT11AY.510.000909
S1073K1073NaaGaaT11AY.590.00053
S1073K1073NaaGaaC11AY.600.000938
S1073K1073NaaGaaC11AY.650.000533
S1073K1073NaaGaaC11AY.680.000274
S1073K1073NaaGaaT11AY.7.10.000113
S1073K1073NaaGaaT11AY.700.000209
S1073K1073NaaGaaT11AY.720.001361
S1073K1073NaaGaaT11AY.770.001127
S1073K1073NaaGaaT11AY.780.001541
S1073K1073NaaGaaT11AY.840.000437
S1073K1073NaaGaaC11AY.910.00073
S1073K1073NaaGaaC11AY.990.001049
S1073K1073NaaGaaC11B0.000128
S1073K1073NaaGaaT11B.1.1.1700.001247
S1073K1073NaaGaaT11B.1.1.2140.000055
S1073K1073NaaGaaC11B.1.1.2630.001558
S1073K1073NaaGaaT11B.1.1.2910.000742
S1073K1073NaaGaaC11B.1.1.3060.000438
S1073K1073NaaGaaC11B.1.1.3180.000302
S1073K1073NaaGaaT11B.1.1.390.00051
S1073K1073NaaGaaC11B.1.1.4660.008696
S1073K1073NaaGaaT11B.1.1.5280.004808
S1073K1073NaaGaaT11B.1.1110.001175
S1073K1073NaaGaaT11B.1.1490.003425
S1073K1073NaaGaaT11B.1.1530.018868
S1073K1073NaaGaaT11B.1.177.440.000519
S1073K1073NaaGaaT11B.1.177.750.001041
S1073K1073NaaGaaC11B.1.177.810.000189
S1073K1073NaaGaaT11B.1.2210.000071
S1073K1073NaaGaaT11B.1.243.20.014493
S1073K1073NaaGaaT11B.1.2500.014493
S1073K1073NaaGaaT11B.1.258.120.007874
S1073K1073NaaGaaT11B.1.2790.000514
S1073K1073NaaGaaT11B.1.3280.03125
S1073K1073NaaGaaT11B.1.36.100.004785
S1073K1073NaaGaaT11B.1.36.220.001208
S1073K1073NaaGaaT11B.1.3890.001002
S1073K1073NaaGaaT11B.1.4160.001269
S1073K1073NaaGaaC11B.1.4220.000812
S1073K1073NaaGaaT11B.1.4560.003268
S1073K1073NaaGaaT11B.1.5600.00463
S1073K1073NaaGaaT11B.1.5740.002151
S1073K1073NaaGaaC11B.1.5950.000261
S1073K1073NaaGaaT11B.1.5970.00463
S1073K1073NaaGaaT11B.1.617.30.002985
S1073K1073NaaGaaT11B.1.6200.000946
S1073K1073NaaGaaC11B.6.60.000889
S1073K1073NaaGaaT11C.37.10.002618
S1073K1073NaaGaaT11P.1.10.000318
S1073K1073NaaGaaT11P.1.170.000162
S1073K1073NaaGaaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.