CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : Mut = K1045K

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	1045	K1045K		syn	aaG	aaA	3160	3160	1	24695-24697

Details of the mutation K1045K within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	1045	K1045K	aaG	aaA	3160	3160	All	0.000604
S	1045	K1045K	aaG	aaA	1963	1963	A.2.5	0.979541
S	1045	K1045K	aaG	aaA	628	628	A.2.5.2	0.987421
S	1045	K1045K	aaG	aaA	208	208	A.2.5.1	1
S	1045	K1045K	aaG	aaA	95	95	A.2.5.3	0.979381
S	1045	K1045K	aaG	aaA	58	58	AY.4	0.00009
S	1045	K1045K	aaG	aaA	48	48	B.1.1.7	0.000043
S	1045	K1045K	aaG	aaA	15	15	P.1	0.000236
S	1045	K1045K	aaG	aaA	14	14	AY.44	0.000085
S	1045	K1045K	aaG	aaA	11	11	AY.47	0.000342
S	1045	K1045K	aaG	aaA	11	11	B.1.320	0.013699
S	1045	K1045K	aaG	aaA	8	8	B.1.1.434	0.002788
S	1045	K1045K	aaG	aaA	7	7	B.1	0.000064
S	1045	K1045K	aaG	aaA	6	6	B.1.2	0.000053
S	1045	K1045K	aaG	aaA	6	6	B.1.36.29	0.003104
S	1045	K1045K	aaG	aaA	6	6	Q.4	0.002729
S	1045	K1045K	aaG	aaA	5	5	B.1.1	0.000091
S	1045	K1045K	aaG	aaA	5	5	B.1.258.17	0.00052
S	1045	K1045K	aaG	aaA	4	4	B.1.177.48	0.0125
S	1045	K1045K	aaG	aaA	3	3	AY.25	0.000018
S	1045	K1045K	aaG	aaA	3	3	AY.26	0.000085
S	1045	K1045K	aaG	aaA	3	3	AY.5	0.000062
S	1045	K1045K	aaG	aaA	3	3	B.1.177	0.00004
S	1045	K1045K	aaG	aaA	3	3	B.1.239	0.003663
S	1045	K1045K	aaG	aaA	3	3	P.2	0.00056
S	1045	K1045K	aaG	aaA	2	2	AY.14	0.000176
S	1045	K1045K	aaG	aaA	2	2	AY.46.4	0.000329
S	1045	K1045K	aaG	aaA	2	2	B.1.1.265	0.006309
S	1045	K1045K	aaG	aaA	2	2	B.1.1.305	0.007722
S	1045	K1045K	aaG	aaA	2	2	B.1.1.374	0.004751
S	1045	K1045K	aaG	aaA	2	2	B.1.429	0.000047
S	1045	K1045K	aaG	aaA	2	2	B.1.588	0.00182
S	1045	K1045K	aaG	aaA	2	2	B.1.617.2	0.000008
S	1045	K1045K	aaG	aaA	1	1	A.2	0.000662
S	1045	K1045K	aaG	aaA	1	1	AY.103	0.000006
S	1045	K1045K	aaG	aaA	1	1	AY.107	0.000466
S	1045	K1045K	aaG	aaA	1	1	AY.118	0.000063
S	1045	K1045K	aaG	aaA	1	1	AY.120	0.000037
S	1045	K1045K	aaG	aaA	1	1	AY.23	0.00007
S	1045	K1045K	aaG	aaA	1	1	AY.39	0.000025
S	1045	K1045K	aaG	aaA	1	1	AY.4.2	0.000022
S	1045	K1045K	aaG	aaA	1	1	AY.45	0.000122
S	1045	K1045K	aaG	aaA	1	1	AY.46.6	0.000072
S	1045	K1045K	aaG	aaA	1	1	AY.58	0.000907
S	1045	K1045K	aaG	aaA	1	1	AY.6	0.000041
S	1045	K1045K	aaG	aaA	1	1	AY.70	0.000209
S	1045	K1045K	aaG	aaA	1	1	B.1.1.141	0.002012
S	1045	K1045K	aaG	aaA	1	1	B.1.1.220	0.001859
S	1045	K1045K	aaG	aaA	1	1	B.1.1.284	0.000107
S	1045	K1045K	aaG	aaA	1	1	B.1.1.433	0.001425
S	1045	K1045K	aaG	aaA	1	1	B.1.157	0.002985
S	1045	K1045K	aaG	aaA	1	1	B.1.177.17	0.000821
S	1045	K1045K	aaG	aaA	1	1	B.1.232	0.000537
S	1045	K1045K	aaG	aaA	1	1	B.1.349	0.000715
S	1045	K1045K	aaG	aaA	1	1	B.1.438.1	0.000107
S	1045	K1045K	aaG	aaA	1	1	B.1.564	0.000426
S	1045	K1045K	aaG	aaA	1	1	B.1.621	0.000089
S	1045	K1045K	aaG	aaA	1	1	C.37	0.000116
S	1045	K1045K	aaG	aaA	1	1	P.1.15	0.000232
S	1045	K1045K	aaG	aaA	1	1	P.1.17	0.000162
S	1045	K1045K	aaG	aaA	1	1	P.1.17.1	0.000875

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.