CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = I834V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S834I834VnonsynAtcGtc165116500.99939424062-24064
S834I834VnonsynAtCGtT165110.00060569324062-24064

Details of the mutation I834V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S834I834VAtcGtc16501651All0.000316
S834I834VAtCGtT11651All0
S834I834VAtcGtc562562AY.30.00559
S834I834VAtcGtc518518AY.1030.003216
S834I834VAtcGtc117117AY.40.000182
S834I834VAtcGtc8282B.1.1.70.000073
S834I834VAtcGtc7474AY.46.60.005343
S834I834VAtcGtc3939B.1.617.20.000147
S834I834VAtcGtc2828AY.250.000168
S834I834VAtcGtc1919B.1.20.000167
S834I834VAtcGtc1616AY.440.000097
S834I834VAtcGtc1616B.1.6280.005638
S834I834VAtcGtc1414AY.50.000289
S834I834VAtcGtc1414B.1.1.4560.777778
S834I834VAtcGtc99B.1.1.4330.012821
S834I834VAtcGtc77AY.470.000218
S834I834VAtcGtc66AY.1190.000212
S834I834VAtcGtc66AY.390.000148
S834I834VAtcGtc66AY.70.001176
S834I834VAtcGtc66B.10.000055
S834I834VAtcGtc66B.1.1770.000079
S834I834VAtcGtc55AY.1020.000133
S834I834VAtcGtc55AY.430.000022
S834I834VAtcGtc44AY.1180.000251
S834I834VAtcGtc44AY.330.000267
S834I834VAtcGtc33AY.1200.000112
S834I834VAtcGtc33AY.200.000117
S834I834VAtcGtc33AY.230.000209
S834I834VAtcGtc33AY.290.000047
S834I834VAtcGtc33AY.420.000121
S834I834VAtcGtc33B.1.1.3110.001074
S834I834VAtcGtc33B.1.36.290.001552
S834I834VAtcGtc33P.10.000047
S834I834VAtcGtc33P.1.170.000485
S834I834VAtcGtc22AY.1130.000285
S834I834VAtcGtc22AY.270.000129
S834I834VAtcGtc22AY.450.000243
S834I834VAtcGtc22AY.590.001059
S834I834VAtcGtc22AY.690.000373
S834I834VAtcGtc22AY.9.20.000073
S834I834VAtcGtc22AY.98.10.000097
S834I834VAtcGtc22B.1.1.2160.001781
S834I834VAtcGtc22B.1.1.280.000622
S834I834VAtcGtc22B.1.3510.000059
S834I834VAtcGtc22B.1.6340.006849
S834I834VAtcGtc22P.1.160.000748
S834I834VAtcGtc22Q.70.002222
S834I834VAtcGtc11A.20.000662
S834I834VAtcGtc11AY.1110.000183
S834I834VAtcGtc11AY.120.10.000321
S834I834VAtcGtc11AY.4.20.000022
S834I834VAtcGtc11AY.4.30.000842
S834I834VAtcGtc11AY.530.000288
S834I834VAtcGtc11AY.580.000907
S834I834VAtcGtc11AY.60.000041
S834I834VAtcGtc11AY.600.000938
S834I834VAtcGtc11AY.7.10.000113
S834I834VAtCGtT11AY.750.000056
S834I834VAtcGtc11AY.880.000884
S834I834VAtcGtc11AY.920.000287
S834I834VAtcGtc11AY.940.000443
S834I834VAtcGtc11AY.950.000761
S834I834VAtcGtc11B.1.10.000018
S834I834VAtcGtc11B.1.1.250.000569
S834I834VAtcGtc11B.1.1.2840.000107
S834I834VAtcGtc11B.1.1.3010.001179
S834I834VAtcGtc11B.1.1.3980.003226
S834I834VAtcGtc11B.1.1.5190.00004
S834I834VAtcGtc11B.1.1390.000733
S834I834VAtcGtc11B.1.1600.000031
S834I834VAtcGtc11B.1.177.650.000665
S834I834VAtcGtc11B.1.2360.002053
S834I834VAtcGtc11B.1.2580.000067
S834I834VAtcGtc11B.1.36.160.001425
S834I834VAtcGtc11B.1.36.180.00042
S834I834VAtcGtc11B.1.4590.004082
S834I834VAtcGtc11B.1.5170.000427
S834I834VAtcGtc11B.1.5960.000087
S834I834VAtcGtc11B.1.6370.000073
S834I834VAtcGtc11C.350.000774
S834I834VAtcGtc11P.1.40.000977
S834I834VAtcGtc11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.