CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 68 | I68I | syn | atA | atC | 1151097 | 1149496 | 0.998609 | 21764-21766 | |
S | 68 | I68I | syn | atA | atT | 1151097 | 1601 | 0.00139085 | 21764-21766 |
Details of the mutation I68I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 68 | I68I | atA | atC | 1149496 | 1151097 | All | 0.219855 |
S | 68 | I68I | atA | atT | 1601 | 1151097 | All | 0.000306 |
S | 68 | I68I | atA | atC | 1077158 | 1078634 | B.1.1.7 | 0.964297 |
S | 68 | I68I | atA | atT | 1476 | 1078634 | B.1.1.7 | 0.001321 |
S | 68 | I68I | atA | atC | 10202 | 10207 | B.1.258 | 0.678911 |
S | 68 | I68I | atA | atT | 5 | 10207 | B.1.258 | 0.000333 |
S | 68 | I68I | atA | atC | 9004 | 9043 | B.1.258.17 | 0.936161 |
S | 68 | I68I | atA | atT | 39 | 9043 | B.1.258.17 | 0.004055 |
S | 68 | I68I | atA | atC | 8263 | 8281 | B.1.525 | 0.935046 |
S | 68 | I68I | atA | atT | 18 | 8281 | B.1.525 | 0.002037 |
S | 68 | I68I | atA | atC | 7720 | 7726 | Q.1 | 0.97524 |
S | 68 | I68I | atA | atT | 6 | 7726 | Q.1 | 0.000758 |
S | 68 | I68I | atA | atC | 6744 | 6744 | Q.3 | 0.9781 |
S | 68 | I68I | atA | atC | 5976 | 5976 | Q.8 | 0.985488 |
S | 68 | I68I | atA | atC | 2310 | 2310 | B.1.258.11 | 0.915577 |
S | 68 | I68I | atA | atC | 2142 | 2142 | Q.4 | 0.974079 |
S | 68 | I68I | atA | atC | 2114 | 2117 | B.1.1 | 0.03835 |
S | 68 | I68I | atA | atT | 3 | 2117 | B.1.1 | 0.000054 |
S | 68 | I68I | atA | atC | 1434 | 1434 | Q.2 | 0.879755 |
S | 68 | I68I | atA | atC | 1349 | 1354 | C.36.3 | 0.765173 |
S | 68 | I68I | atA | atT | 5 | 1354 | C.36.3 | 0.002836 |
S | 68 | I68I | atA | atC | 1280 | 1281 | B.1 | 0.011724 |
S | 68 | I68I | atA | atT | 1 | 1281 | B.1 | 0.000009 |
S | 68 | I68I | atA | atC | 1171 | 1172 | B.1.375 | 0.959836 |
S | 68 | I68I | atA | atT | 1 | 1172 | B.1.375 | 0.00082 |
S | 68 | I68I | atA | atC | 1043 | 1052 | B.1.620 | 0.986755 |
S | 68 | I68I | atA | atT | 9 | 1052 | B.1.620 | 0.008515 |
S | 68 | I68I | atA | atC | 1022 | 1022 | B.1.1.298 | 0.881034 |
S | 68 | I68I | atA | atC | 893 | 893 | Q.7 | 0.992222 |
S | 68 | I68I | atA | atC | 518 | 519 | B.1.258.7 | 0.99044 |
S | 68 | I68I | atA | atT | 1 | 519 | B.1.258.7 | 0.001912 |
S | 68 | I68I | atA | atC | 498 | 498 | AY.44 | 0.003031 |
S | 68 | I68I | atA | atC | 359 | 361 | AY.43 | 0.001591 |
S | 68 | I68I | atA | atT | 2 | 361 | AY.43 | 0.000009 |
S | 68 | I68I | atA | atC | 345 | 349 | A.28 | 0.912698 |
S | 68 | I68I | atA | atT | 4 | 349 | A.28 | 0.010582 |
S | 68 | I68I | atA | atC | 340 | 340 | B.1.258.22 | 0.906667 |
S | 68 | I68I | atA | atC | 332 | 334 | B.1.625 | 0.781176 |
S | 68 | I68I | atA | atT | 2 | 334 | B.1.625 | 0.004706 |
S | 68 | I68I | atA | atC | 288 | 291 | B.1.617.2 | 0.001084 |
S | 68 | I68I | atA | atT | 3 | 291 | B.1.617.2 | 0.000011 |
S | 68 | I68I | atA | atC | 286 | 286 | B.1.258.4 | 0.986207 |
S | 68 | I68I | atA | atC | 272 | 272 | B.1.634 | 0.931507 |
S | 68 | I68I | atA | atC | 264 | 264 | C.36.3.1 | 0.717391 |
S | 68 | I68I | atA | atC | 258 | 259 | B.1.429 | 0.00607 |
S | 68 | I68I | atA | atT | 1 | 259 | B.1.429 | 0.000024 |
S | 68 | I68I | atA | atC | 231 | 231 | AY.25 | 0.001389 |
S | 68 | I68I | atA | atC | 224 | 230 | AY.4 | 0.000349 |
S | 68 | I68I | atA | atT | 6 | 230 | AY.4 | 0.000009 |
S | 68 | I68I | atA | atC | 199 | 199 | B.1.258.9 | 0.995 |
S | 68 | I68I | atA | atC | 152 | 165 | AY.3 | 0.001512 |
S | 68 | I68I | atA | atT | 13 | 165 | AY.3 | 0.000129 |
S | 68 | I68I | atA | atC | 163 | 163 | B.1.427 | 0.008231 |
S | 68 | I68I | atA | atC | 162 | 162 | B.1.576 | 0.146872 |
S | 68 | I68I | atA | atC | 154 | 154 | P.1 | 0.002426 |
S | 68 | I68I | atA | atC | 152 | 152 | AY.103 | 0.000944 |
S | 68 | I68I | atA | atC | 151 | 151 | Q.6 | 1 |
S | 68 | I68I | atA | atC | 142 | 142 | B.1.2 | 0.00125 |
S | 68 | I68I | atA | atC | 140 | 140 | AY.23 | 0.009765 |
S | 68 | I68I | atA | atC | 138 | 138 | B.1.258.19 | 0.978723 |
S | 68 | I68I | atA | atC | 129 | 129 | B.1.415.1 | 0.977273 |
S | 68 | I68I | atA | atC | 128 | 128 | B.1.258.21 | 0.992248 |
S | 68 | I68I | atA | atC | 123 | 123 | AY.36 | 0.01823 |
S | 68 | I68I | atA | atC | 123 | 123 | B.1.258.12 | 0.968504 |
S | 68 | I68I | atA | atC | 113 | 113 | B.1.258.5 | 0.991228 |
S | 68 | I68I | atA | atC | 110 | 110 | B.1.1.70 | 0.037517 |
S | 68 | I68I | atA | atC | 94 | 94 | B.1.177 | 0.001238 |
S | 68 | I68I | atA | atC | 83 | 83 | B.1.258.10 | 0.943182 |
S | 68 | I68I | atA | atC | 77 | 77 | AY.26 | 0.00218 |
S | 68 | I68I | atA | atC | 73 | 74 | B.1.160 | 0.002277 |
S | 68 | I68I | atA | atT | 1 | 74 | B.1.160 | 0.000031 |
S | 68 | I68I | atA | atC | 72 | 72 | AY.39 | 0.001779 |
S | 68 | I68I | atA | atC | 68 | 68 | AY.42 | 0.002736 |
S | 68 | I68I | atA | atC | 68 | 68 | P.1.10.1 | 0.552846 |
S | 68 | I68I | atA | atC | 63 | 63 | B.1.1.205 | 0.234201 |
S | 68 | I68I | atA | atC | 63 | 63 | C.37 | 0.007312 |
S | 68 | I68I | atA | atC | 62 | 62 | B.1.596 | 0.005403 |
S | 68 | I68I | atA | atC | 60 | 60 | AY.9.2 | 0.002204 |
S | 68 | I68I | atA | atC | 60 | 60 | B.1.258.20 | 0.952381 |
S | 68 | I68I | atA | atC | 59 | 59 | Q.5 | 1 |
S | 68 | I68I | atA | atC | 58 | 58 | R.1 | 0.005221 |
S | 68 | I68I | atA | atC | 56 | 56 | B.1.609 | 0.026846 |
S | 68 | I68I | atA | atC | 53 | 53 | B.1.617.1 | 0.006835 |
S | 68 | I68I | atA | atC | 50 | 50 | B.1.258.6 | 0.980392 |
S | 68 | I68I | atA | atC | 49 | 49 | AY.109 | 0.036243 |
S | 68 | I68I | atA | atC | 46 | 48 | AY.102 | 0.00122 |
S | 68 | I68I | atA | atT | 2 | 48 | AY.102 | 0.000053 |
S | 68 | I68I | atA | atC | 47 | 47 | B.1.526 | 0.001105 |
S | 68 | I68I | atA | atC | 45 | 45 | B.1.221 | 0.003196 |
S | 68 | I68I | atA | atC | 45 | 45 | XA | 1 |
S | 68 | I68I | atA | atC | 43 | 43 | AY.75 | 0.002409 |
S | 68 | I68I | atA | atC | 41 | 41 | B.1.258.23 | 0.97619 |
S | 68 | I68I | atA | atC | 40 | 40 | B | 0.005112 |
S | 68 | I68I | atA | atC | 40 | 40 | B.1.639 | 0.869565 |
S | 68 | I68I | atA | atC | 36 | 36 | AY.61 | 0.003772 |
S | 68 | I68I | atA | atC | 35 | 35 | B.1.1.409 | 0.09915 |
S | 68 | I68I | atA | atC | 35 | 35 | B.1.637 | 0.002558 |
S | 68 | I68I | atA | atC | 35 | 35 | P.1.1 | 0.011118 |
S | 68 | I68I | atA | atC | 32 | 32 | AY.46 | 0.003331 |
S | 68 | I68I | atA | atC | 32 | 32 | AY.53 | 0.009201 |
S | 68 | I68I | atA | atC | 31 | 31 | AY.75.1 | 0.00559 |
S | 68 | I68I | atA | atC | 31 | 31 | C.36 | 0.028233 |
S | 68 | I68I | atA | atC | 28 | 29 | AY.100 | 0.001288 |
S | 68 | I68I | atA | atT | 1 | 29 | AY.100 | 0.000046 |
S | 68 | I68I | atA | atC | 28 | 28 | AY.47 | 0.000871 |
S | 68 | I68I | atA | atC | 28 | 28 | AY.5 | 0.000578 |
S | 68 | I68I | atA | atC | 28 | 28 | AY.99.2 | 0.00258 |
S | 68 | I68I | atA | atC | 28 | 28 | B.1.258.24 | 0.301075 |
S | 68 | I68I | atA | atC | 27 | 27 | B.1.1.519 | 0.001072 |
S | 68 | I68I | atA | atC | 26 | 26 | AY.118 | 0.001629 |
S | 68 | I68I | atA | atC | 24 | 24 | AY.65 | 0.012793 |
S | 68 | I68I | atA | atC | 24 | 24 | AY.98 | 0.001896 |
S | 68 | I68I | atA | atC | 24 | 24 | AY.98.1 | 0.001162 |
S | 68 | I68I | atA | atC | 23 | 23 | B.1.1.161 | 0.081272 |
S | 68 | I68I | atA | atC | 22 | 22 | AY.117 | 0.001859 |
S | 68 | I68I | atA | atC | 21 | 21 | B.1.621 | 0.001859 |
S | 68 | I68I | atA | atC | 20 | 20 | AY.4.5 | 0.00215 |
S | 68 | I68I | atA | atC | 18 | 18 | B.1.1.222 | 0.003672 |
S | 68 | I68I | atA | atC | 18 | 18 | B.1.351 | 0.000535 |
S | 68 | I68I | atA | atC | 16 | 16 | A | 0.006192 |
S | 68 | I68I | atA | atC | 16 | 16 | AY.92 | 0.004596 |
S | 68 | I68I | atA | atC | 16 | 16 | B.1.1.37 | 0.003086 |
S | 68 | I68I | atA | atC | 16 | 16 | B.1.1.507 | 0.13913 |
S | 68 | I68I | atA | atC | 15 | 15 | AY.16.1 | 0.007049 |
S | 68 | I68I | atA | atC | 15 | 15 | AY.70 | 0.003128 |
S | 68 | I68I | atA | atC | 15 | 15 | B.1.1.25 | 0.008528 |
S | 68 | I68I | atA | atC | 14 | 14 | AY.34 | 0.001358 |
S | 68 | I68I | atA | atC | 14 | 14 | AY.52 | 0.011401 |
S | 68 | I68I | atA | atC | 14 | 14 | B.1.1.220 | 0.026022 |
S | 68 | I68I | atA | atC | 14 | 14 | B.1.258.14 | 0.013725 |
S | 68 | I68I | atA | atC | 13 | 13 | AY.30 | 0.005144 |
S | 68 | I68I | atA | atC | 13 | 13 | AY.35 | 0.00303 |
S | 68 | I68I | atA | atC | 12 | 13 | AY.54 | 0.001144 |
S | 68 | I68I | atA | atT | 1 | 13 | AY.54 | 0.000095 |
S | 68 | I68I | atA | atC | 13 | 13 | B.1.1.312 | 0.024857 |
S | 68 | I68I | atA | atC | 13 | 13 | P.1.12 | 0.006292 |
S | 68 | I68I | atA | atC | 12 | 12 | AY.20 | 0.000466 |
S | 68 | I68I | atA | atC | 12 | 12 | AY.45 | 0.00146 |
S | 68 | I68I | atA | atC | 12 | 12 | AY.46.6 | 0.000866 |
S | 68 | I68I | atA | atC | 12 | 12 | AY.91 | 0.008766 |
S | 68 | I68I | atA | atC | 11 | 11 | B.1.1.294 | 0.013924 |
S | 68 | I68I | atA | atC | 11 | 11 | B.1.411 | 0.040741 |
S | 68 | I68I | atA | atC | 10 | 10 | AY.68 | 0.002737 |
S | 68 | I68I | atA | atC | 10 | 10 | AY.9 | 0.000676 |
S | 68 | I68I | atA | atC | 10 | 10 | B.1.1.528 | 0.048077 |
S | 68 | I68I | atA | atC | 10 | 10 | B.1.258.18 | 1 |
S | 68 | I68I | atA | atC | 9 | 9 | AY.16 | 0.003417 |
S | 68 | I68I | atA | atC | 8 | 9 | AY.3.1 | 0.000682 |
S | 68 | I68I | atA | atT | 1 | 9 | AY.3.1 | 0.000085 |
S | 68 | I68I | atA | atC | 9 | 9 | AY.40 | 0.008679 |
S | 68 | I68I | atA | atC | 9 | 9 | B.1.388 | 0.818182 |
S | 68 | I68I | atA | atC | 8 | 8 | AY.9.1 | 0.00067 |
S | 68 | I68I | atA | atC | 8 | 8 | B.1.1.50 | 0.005431 |
S | 68 | I68I | atA | atC | 8 | 8 | B.1.311 | 0.002197 |
S | 68 | I68I | atA | atC | 8 | 8 | B.1.367 | 0.006339 |
S | 68 | I68I | atA | atC | 7 | 7 | AY.1 | 0.00277 |
S | 68 | I68I | atA | atC | 7 | 7 | AY.119 | 0.000247 |
S | 68 | I68I | atA | atC | 7 | 7 | AY.34.1 | 0.00357 |
S | 68 | I68I | atA | atC | 7 | 7 | AY.39.1 | 0.000277 |
S | 68 | I68I | atA | atC | 7 | 7 | AY.74 | 0.00081 |
S | 68 | I68I | atA | atC | 7 | 7 | B.1.1.28 | 0.002179 |
S | 68 | I68I | atA | atC | 7 | 7 | B.1.243 | 0.000487 |
S | 68 | I68I | atA | atC | 7 | 7 | B.1.393 | 0.2 |
S | 68 | I68I | atA | atC | 7 | 7 | B.1.623 | 0.003755 |
S | 68 | I68I | atA | atC | 7 | 7 | B.4.1 | 0.132075 |
S | 68 | I68I | atA | atC | 6 | 6 | AY.106 | 0.002009 |
S | 68 | I68I | atA | atC | 6 | 6 | AY.113 | 0.000854 |
S | 68 | I68I | atA | atC | 6 | 6 | AY.33 | 0.000401 |
S | 68 | I68I | atA | atC | 6 | 6 | AY.85 | 0.002563 |
S | 68 | I68I | atA | atC | 6 | 6 | AY.99 | 0.006296 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.1.1 | 0.00196 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.1.141 | 0.012072 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.1.317 | 0.00247 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.1.523 | 0.009375 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.177.31 | 0.068966 |
S | 68 | I68I | atA | atC | 6 | 6 | B.1.564 | 0.002555 |
S | 68 | I68I | atA | atC | 6 | 6 | P.1.15 | 0.001394 |
S | 68 | I68I | atA | atC | 6 | 6 | P.1.16 | 0.002245 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.14 | 0.00044 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.39.2 | 0.007704 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.56 | 0.008026 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.59 | 0.002648 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.69 | 0.000933 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.71 | 0.002375 |
S | 68 | I68I | atA | atC | 5 | 5 | AY.94 | 0.002213 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.1.318 | 0.001509 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.139 | 0.003666 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.157 | 0.014925 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.214 | 0.018315 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.36 | 0.00073 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.554 | 0.022026 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.575 | 0.001517 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.580 | 0.020325 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.599 | 0.018248 |
S | 68 | I68I | atA | atC | 5 | 5 | B.1.628 | 0.001762 |
S | 68 | I68I | atA | atC | 5 | 5 | P.1.7 | 0.001596 |
S | 68 | I68I | atA | atC | 4 | 4 | A.2.5 | 0.001996 |
S | 68 | I68I | atA | atC | 4 | 4 | A.25 | 0.072727 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.105 | 0.002572 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.110 | 0.000451 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.13 | 0.000644 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.21 | 0.00759 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.24 | 0.001724 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.29.1 | 0.000882 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.5.3 | 0.00135 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.5.4 | 0.001107 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.55 | 0.00367 |
S | 68 | I68I | atA | atC | 4 | 4 | AY.95 | 0.003044 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.1.10 | 0.004459 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.1.420 | 0.004024 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.1.448 | 0.00813 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.466.2 | 0.001565 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.619 | 0.003484 |
S | 68 | I68I | atA | atC | 4 | 4 | B.1.621.1 | 0.002023 |
S | 68 | I68I | atA | atC | 3 | 3 | AD.2 | 0.000657 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.120 | 0.000112 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.120.2.1 | 0.001495 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.29 | 0.000047 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.37 | 0.000948 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.4.2 | 0.000065 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.46.5 | 0.000595 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.6 | 0.000123 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.7.2 | 0.001678 |
S | 68 | I68I | atA | atC | 3 | 3 | AY.97 | 0.005102 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.1.153 | 0.003286 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.1.372 | 0.002066 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.1.434 | 0.001046 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.1.525 | 0.016393 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.234 | 0.000396 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.237 | 0.014925 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.258.15 | 0.056604 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.36.38 | 0.004926 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.36.8 | 0.003 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.369 | 0.000856 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.470 | 0.004213 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.533 | 0.028846 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.565 | 0.002431 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.600 | 0.017544 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.633 | 0.125 |
S | 68 | I68I | atA | atC | 3 | 3 | B.1.636 | 0.020134 |
S | 68 | I68I | atA | atC | 3 | 3 | B.52 | 0.030303 |
S | 68 | I68I | atA | atC | 3 | 3 | P.1.10 | 0.000808 |
S | 68 | I68I | atA | atC | 3 | 3 | P.1.6 | 0.005837 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.10 | 0.00106 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.107 | 0.000932 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.114 | 0.000462 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.12 | 0.000632 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.121 | 0.000271 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.19 | 0.002281 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.32 | 0.001065 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.38 | 0.000999 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.62 | 0.000871 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.67 | 0.000929 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.81 | 0.003984 |
S | 68 | I68I | atA | atC | 2 | 2 | AY.88 | 0.001768 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.166 | 0.066667 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.216 | 0.001781 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.241 | 0.004141 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.291 | 0.001485 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.299 | 0.02439 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.306 | 0.000877 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.315 | 0.016949 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.34 | 0.026316 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.370 | 0.025316 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.39 | 0.001019 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.524 | 0.041667 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.1.83 | 0.00542 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.111 | 0.00235 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.170 | 0.008621 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.177.44 | 0.001038 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.177.6 | 0.001953 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.177.86 | 0.000367 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.214.2 | 0.001199 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.22 | 0.002635 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.239 | 0.002442 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.336 | 0.004878 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.380 | 0.013245 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.468 | 0.011429 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.582 | 0.000981 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.590 | 0.009091 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.626 | 0.011429 |
S | 68 | I68I | atA | atC | 2 | 2 | B.1.94 | 0.054054 |
S | 68 | I68I | atA | atC | 2 | 2 | B.6.6 | 0.001778 |
S | 68 | I68I | atA | atC | 2 | 2 | C.39 | 0.037736 |
S | 68 | I68I | atA | atC | 2 | 2 | P.1.17 | 0.000324 |
S | 68 | I68I | atA | atC | 1 | 1 | A.2.5.1 | 0.004808 |
S | 68 | I68I | atA | atC | 1 | 1 | A.2.5.2 | 0.001572 |
S | 68 | I68I | atA | atC | 1 | 1 | A.23.1 | 0.000704 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.101 | 0.00049 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.11 | 0.001339 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.111 | 0.000183 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.116.1 | 0.000311 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.120.1 | 0.000321 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.120.2 | 0.001285 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.17 | 0.008197 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.4.1 | 0.000737 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.4.3 | 0.000842 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.4.4 | 0.000409 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.46.4 | 0.000165 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.5.1 | 0.003759 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.51 | 0.000909 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.58 | 0.000907 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.63 | 0.000387 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.64 | 0.000595 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.7 | 0.000196 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.72 | 0.001361 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.77 | 0.001127 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.83 | 0.001724 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.86 | 0.00083 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.87 | 0.000833 |
S | 68 | I68I | atA | atC | 1 | 1 | AY.91.1 | 0.004065 |
S | 68 | I68I | atA | atC | 1 | 1 | AZ.3 | 0.00152 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.134 | 0.011364 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.135 | 0.004695 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.159 | 0.004673 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.160 | 0.02381 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.171 | 0.003676 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.187 | 0.00885 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.189 | 0.001513 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.231 | 0.003096 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.237 | 0.005405 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.254 | 0.011236 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.265 | 0.003155 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.33 | 0.000421 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.348 | 0.000796 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.351 | 0.002793 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.374 | 0.002375 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.375 | 0.011905 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.388 | 0.045455 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.389 | 0.006061 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.397 | 0.002252 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.416 | 0.000905 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.417 | 0.002703 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.44 | 0.00241 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.459 | 0.015385 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.462 | 0.008621 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.55 | 0.012987 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.62 | 0.027027 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.63 | 0.000386 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.71 | 0.006061 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.1.99 | 0.02381 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.126 | 0.001276 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.128 | 0.000635 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.140 | 0.018868 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.160.14 | 0.002119 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.160.16 | 0.000929 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.21 | 0.000076 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.33 | 0.001645 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.40 | 0.005155 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.45 | 0.000381 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.49 | 0.037037 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.73 | 0.000566 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.75 | 0.001041 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.177.81 | 0.000189 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.199 | 0.004132 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.214.3 | 0.007143 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.240 | 0.000216 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.241 | 0.000812 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.242 | 0.018868 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.258.16 | 0.001637 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.258.3 | 0.001675 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.260 | 0.003344 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.324 | 0.001605 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.351.3 | 0.000876 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.36.10 | 0.004785 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.36.22 | 0.001208 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.361 | 0.001289 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.362 | 0.001541 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.382 | 0.008929 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.398 | 0.002976 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.399 | 0.001934 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.400 | 0.000429 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.406 | 0.006061 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.416.1 | 0.001563 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.432 | 0.011236 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.433 | 0.003195 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.438.1 | 0.000107 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.441 | 0.009615 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.446 | 0.02 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.462 | 0.007246 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.469 | 0.00361 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.497 | 0.000315 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.499 | 0.00105 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.560 | 0.00463 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.561 | 0.000397 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.568 | 0.001111 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.595 | 0.000261 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.617.3 | 0.002985 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.631 | 0.003367 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.78 | 0.008547 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.81 | 0.021277 |
S | 68 | I68I | atA | atC | 1 | 1 | B.1.9.5 | 0.005682 |
S | 68 | I68I | atA | atC | 1 | 1 | B.28 | 0.003279 |
S | 68 | I68I | atA | atC | 1 | 1 | B.55 | 0.00295 |
S | 68 | I68I | atA | atC | 1 | 1 | C.16 | 0.00106 |
S | 68 | I68I | atA | atC | 1 | 1 | C.26 | 0.007353 |
S | 68 | I68I | atA | atC | 1 | 1 | C.35 | 0.000774 |
S | 68 | I68I | atA | atC | 1 | 1 | L.3 | 0.003546 |
S | 68 | I68I | atA | atC | 1 | 1 | N.5 | 0.001767 |
S | 68 | I68I | atA | atC | 1 | 1 | P.1.13 | 0.000898 |
S | 68 | I68I | atA | atC | 1 | 1 | P.2 | 0.000187 |
S | 68 | I68I | atA | atC | 1 | 1 | P.6 | 0.003145 |
S | 68 | I68I | atA | atC | 1 | 1 | W.2 | 0.004831 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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