CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = I68I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S68I68IsynatAatC115109711494960.99860921764-21766
S68I68IsynatAatT115109716010.0013908521764-21766

Details of the mutation I68I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S68I68IatAatC11494961151097All0.219855
S68I68IatAatT16011151097All0.000306
S68I68IatAatC10771581078634B.1.1.70.964297
S68I68IatAatT14761078634B.1.1.70.001321
S68I68IatAatC1020210207B.1.2580.678911
S68I68IatAatT510207B.1.2580.000333
S68I68IatAatC90049043B.1.258.170.936161
S68I68IatAatT399043B.1.258.170.004055
S68I68IatAatC82638281B.1.5250.935046
S68I68IatAatT188281B.1.5250.002037
S68I68IatAatC77207726Q.10.97524
S68I68IatAatT67726Q.10.000758
S68I68IatAatC67446744Q.30.9781
S68I68IatAatC59765976Q.80.985488
S68I68IatAatC23102310B.1.258.110.915577
S68I68IatAatC21422142Q.40.974079
S68I68IatAatC21142117B.1.10.03835
S68I68IatAatT32117B.1.10.000054
S68I68IatAatC14341434Q.20.879755
S68I68IatAatC13491354C.36.30.765173
S68I68IatAatT51354C.36.30.002836
S68I68IatAatC12801281B.10.011724
S68I68IatAatT11281B.10.000009
S68I68IatAatC11711172B.1.3750.959836
S68I68IatAatT11172B.1.3750.00082
S68I68IatAatC10431052B.1.6200.986755
S68I68IatAatT91052B.1.6200.008515
S68I68IatAatC10221022B.1.1.2980.881034
S68I68IatAatC893893Q.70.992222
S68I68IatAatC518519B.1.258.70.99044
S68I68IatAatT1519B.1.258.70.001912
S68I68IatAatC498498AY.440.003031
S68I68IatAatC359361AY.430.001591
S68I68IatAatT2361AY.430.000009
S68I68IatAatC345349A.280.912698
S68I68IatAatT4349A.280.010582
S68I68IatAatC340340B.1.258.220.906667
S68I68IatAatC332334B.1.6250.781176
S68I68IatAatT2334B.1.6250.004706
S68I68IatAatC288291B.1.617.20.001084
S68I68IatAatT3291B.1.617.20.000011
S68I68IatAatC286286B.1.258.40.986207
S68I68IatAatC272272B.1.6340.931507
S68I68IatAatC264264C.36.3.10.717391
S68I68IatAatC258259B.1.4290.00607
S68I68IatAatT1259B.1.4290.000024
S68I68IatAatC231231AY.250.001389
S68I68IatAatC224230AY.40.000349
S68I68IatAatT6230AY.40.000009
S68I68IatAatC199199B.1.258.90.995
S68I68IatAatC152165AY.30.001512
S68I68IatAatT13165AY.30.000129
S68I68IatAatC163163B.1.4270.008231
S68I68IatAatC162162B.1.5760.146872
S68I68IatAatC154154P.10.002426
S68I68IatAatC152152AY.1030.000944
S68I68IatAatC151151Q.61
S68I68IatAatC142142B.1.20.00125
S68I68IatAatC140140AY.230.009765
S68I68IatAatC138138B.1.258.190.978723
S68I68IatAatC129129B.1.415.10.977273
S68I68IatAatC128128B.1.258.210.992248
S68I68IatAatC123123AY.360.01823
S68I68IatAatC123123B.1.258.120.968504
S68I68IatAatC113113B.1.258.50.991228
S68I68IatAatC110110B.1.1.700.037517
S68I68IatAatC9494B.1.1770.001238
S68I68IatAatC8383B.1.258.100.943182
S68I68IatAatC7777AY.260.00218
S68I68IatAatC7374B.1.1600.002277
S68I68IatAatT174B.1.1600.000031
S68I68IatAatC7272AY.390.001779
S68I68IatAatC6868AY.420.002736
S68I68IatAatC6868P.1.10.10.552846
S68I68IatAatC6363B.1.1.2050.234201
S68I68IatAatC6363C.370.007312
S68I68IatAatC6262B.1.5960.005403
S68I68IatAatC6060AY.9.20.002204
S68I68IatAatC6060B.1.258.200.952381
S68I68IatAatC5959Q.51
S68I68IatAatC5858R.10.005221
S68I68IatAatC5656B.1.6090.026846
S68I68IatAatC5353B.1.617.10.006835
S68I68IatAatC5050B.1.258.60.980392
S68I68IatAatC4949AY.1090.036243
S68I68IatAatC4648AY.1020.00122
S68I68IatAatT248AY.1020.000053
S68I68IatAatC4747B.1.5260.001105
S68I68IatAatC4545B.1.2210.003196
S68I68IatAatC4545XA1
S68I68IatAatC4343AY.750.002409
S68I68IatAatC4141B.1.258.230.97619
S68I68IatAatC4040B0.005112
S68I68IatAatC4040B.1.6390.869565
S68I68IatAatC3636AY.610.003772
S68I68IatAatC3535B.1.1.4090.09915
S68I68IatAatC3535B.1.6370.002558
S68I68IatAatC3535P.1.10.011118
S68I68IatAatC3232AY.460.003331
S68I68IatAatC3232AY.530.009201
S68I68IatAatC3131AY.75.10.00559
S68I68IatAatC3131C.360.028233
S68I68IatAatC2829AY.1000.001288
S68I68IatAatT129AY.1000.000046
S68I68IatAatC2828AY.470.000871
S68I68IatAatC2828AY.50.000578
S68I68IatAatC2828AY.99.20.00258
S68I68IatAatC2828B.1.258.240.301075
S68I68IatAatC2727B.1.1.5190.001072
S68I68IatAatC2626AY.1180.001629
S68I68IatAatC2424AY.650.012793
S68I68IatAatC2424AY.980.001896
S68I68IatAatC2424AY.98.10.001162
S68I68IatAatC2323B.1.1.1610.081272
S68I68IatAatC2222AY.1170.001859
S68I68IatAatC2121B.1.6210.001859
S68I68IatAatC2020AY.4.50.00215
S68I68IatAatC1818B.1.1.2220.003672
S68I68IatAatC1818B.1.3510.000535
S68I68IatAatC1616A0.006192
S68I68IatAatC1616AY.920.004596
S68I68IatAatC1616B.1.1.370.003086
S68I68IatAatC1616B.1.1.5070.13913
S68I68IatAatC1515AY.16.10.007049
S68I68IatAatC1515AY.700.003128
S68I68IatAatC1515B.1.1.250.008528
S68I68IatAatC1414AY.340.001358
S68I68IatAatC1414AY.520.011401
S68I68IatAatC1414B.1.1.2200.026022
S68I68IatAatC1414B.1.258.140.013725
S68I68IatAatC1313AY.300.005144
S68I68IatAatC1313AY.350.00303
S68I68IatAatC1213AY.540.001144
S68I68IatAatT113AY.540.000095
S68I68IatAatC1313B.1.1.3120.024857
S68I68IatAatC1313P.1.120.006292
S68I68IatAatC1212AY.200.000466
S68I68IatAatC1212AY.450.00146
S68I68IatAatC1212AY.46.60.000866
S68I68IatAatC1212AY.910.008766
S68I68IatAatC1111B.1.1.2940.013924
S68I68IatAatC1111B.1.4110.040741
S68I68IatAatC1010AY.680.002737
S68I68IatAatC1010AY.90.000676
S68I68IatAatC1010B.1.1.5280.048077
S68I68IatAatC1010B.1.258.181
S68I68IatAatC99AY.160.003417
S68I68IatAatC89AY.3.10.000682
S68I68IatAatT19AY.3.10.000085
S68I68IatAatC99AY.400.008679
S68I68IatAatC99B.1.3880.818182
S68I68IatAatC88AY.9.10.00067
S68I68IatAatC88B.1.1.500.005431
S68I68IatAatC88B.1.3110.002197
S68I68IatAatC88B.1.3670.006339
S68I68IatAatC77AY.10.00277
S68I68IatAatC77AY.1190.000247
S68I68IatAatC77AY.34.10.00357
S68I68IatAatC77AY.39.10.000277
S68I68IatAatC77AY.740.00081
S68I68IatAatC77B.1.1.280.002179
S68I68IatAatC77B.1.2430.000487
S68I68IatAatC77B.1.3930.2
S68I68IatAatC77B.1.6230.003755
S68I68IatAatC77B.4.10.132075
S68I68IatAatC66AY.1060.002009
S68I68IatAatC66AY.1130.000854
S68I68IatAatC66AY.330.000401
S68I68IatAatC66AY.850.002563
S68I68IatAatC66AY.990.006296
S68I68IatAatC66B.1.1.10.00196
S68I68IatAatC66B.1.1.1410.012072
S68I68IatAatC66B.1.1.3170.00247
S68I68IatAatC66B.1.1.5230.009375
S68I68IatAatC66B.1.177.310.068966
S68I68IatAatC66B.1.5640.002555
S68I68IatAatC66P.1.150.001394
S68I68IatAatC66P.1.160.002245
S68I68IatAatC55AY.140.00044
S68I68IatAatC55AY.39.20.007704
S68I68IatAatC55AY.560.008026
S68I68IatAatC55AY.590.002648
S68I68IatAatC55AY.690.000933
S68I68IatAatC55AY.710.002375
S68I68IatAatC55AY.940.002213
S68I68IatAatC55B.1.1.3180.001509
S68I68IatAatC55B.1.1390.003666
S68I68IatAatC55B.1.1570.014925
S68I68IatAatC55B.1.2140.018315
S68I68IatAatC55B.1.360.00073
S68I68IatAatC55B.1.5540.022026
S68I68IatAatC55B.1.5750.001517
S68I68IatAatC55B.1.5800.020325
S68I68IatAatC55B.1.5990.018248
S68I68IatAatC55B.1.6280.001762
S68I68IatAatC55P.1.70.001596
S68I68IatAatC44A.2.50.001996
S68I68IatAatC44A.250.072727
S68I68IatAatC44AY.1050.002572
S68I68IatAatC44AY.1100.000451
S68I68IatAatC44AY.130.000644
S68I68IatAatC44AY.210.00759
S68I68IatAatC44AY.240.001724
S68I68IatAatC44AY.29.10.000882
S68I68IatAatC44AY.5.30.00135
S68I68IatAatC44AY.5.40.001107
S68I68IatAatC44AY.550.00367
S68I68IatAatC44AY.950.003044
S68I68IatAatC44B.1.1.100.004459
S68I68IatAatC44B.1.1.4200.004024
S68I68IatAatC44B.1.1.4480.00813
S68I68IatAatC44B.1.466.20.001565
S68I68IatAatC44B.1.6190.003484
S68I68IatAatC44B.1.621.10.002023
S68I68IatAatC33AD.20.000657
S68I68IatAatC33AY.1200.000112
S68I68IatAatC33AY.120.2.10.001495
S68I68IatAatC33AY.290.000047
S68I68IatAatC33AY.370.000948
S68I68IatAatC33AY.4.20.000065
S68I68IatAatC33AY.4.2.10.000447
S68I68IatAatC33AY.46.50.000595
S68I68IatAatC33AY.60.000123
S68I68IatAatC33AY.7.20.001678
S68I68IatAatC33AY.970.005102
S68I68IatAatC33B.1.1.1530.003286
S68I68IatAatC33B.1.1.3720.002066
S68I68IatAatC33B.1.1.4340.001046
S68I68IatAatC33B.1.1.5250.016393
S68I68IatAatC33B.1.2340.000396
S68I68IatAatC33B.1.2370.014925
S68I68IatAatC33B.1.258.150.056604
S68I68IatAatC33B.1.36.380.004926
S68I68IatAatC33B.1.36.80.003
S68I68IatAatC33B.1.3690.000856
S68I68IatAatC33B.1.4700.004213
S68I68IatAatC33B.1.5330.028846
S68I68IatAatC33B.1.5650.002431
S68I68IatAatC33B.1.6000.017544
S68I68IatAatC33B.1.6330.125
S68I68IatAatC33B.1.6360.020134
S68I68IatAatC33B.520.030303
S68I68IatAatC33P.1.100.000808
S68I68IatAatC33P.1.60.005837
S68I68IatAatC22AY.100.00106
S68I68IatAatC22AY.1070.000932
S68I68IatAatC22AY.1140.000462
S68I68IatAatC22AY.120.000632
S68I68IatAatC22AY.1210.000271
S68I68IatAatC22AY.190.002281
S68I68IatAatC22AY.320.001065
S68I68IatAatC22AY.380.000999
S68I68IatAatC22AY.620.000871
S68I68IatAatC22AY.670.000929
S68I68IatAatC22AY.810.003984
S68I68IatAatC22AY.880.001768
S68I68IatAatC22B.1.1.1660.066667
S68I68IatAatC22B.1.1.2160.001781
S68I68IatAatC22B.1.1.2410.004141
S68I68IatAatC22B.1.1.2910.001485
S68I68IatAatC22B.1.1.2990.02439
S68I68IatAatC22B.1.1.3060.000877
S68I68IatAatC22B.1.1.3150.016949
S68I68IatAatC22B.1.1.340.026316
S68I68IatAatC22B.1.1.3700.025316
S68I68IatAatC22B.1.1.390.001019
S68I68IatAatC22B.1.1.5240.041667
S68I68IatAatC22B.1.1.830.00542
S68I68IatAatC22B.1.1110.00235
S68I68IatAatC22B.1.1700.008621
S68I68IatAatC22B.1.177.440.001038
S68I68IatAatC22B.1.177.60.001953
S68I68IatAatC22B.1.177.860.000367
S68I68IatAatC22B.1.214.20.001199
S68I68IatAatC22B.1.220.002635
S68I68IatAatC22B.1.2390.002442
S68I68IatAatC22B.1.3360.004878
S68I68IatAatC22B.1.3800.013245
S68I68IatAatC22B.1.4680.011429
S68I68IatAatC22B.1.5820.000981
S68I68IatAatC22B.1.5900.009091
S68I68IatAatC22B.1.6260.011429
S68I68IatAatC22B.1.940.054054
S68I68IatAatC22B.6.60.001778
S68I68IatAatC22C.390.037736
S68I68IatAatC22P.1.170.000324
S68I68IatAatC11A.2.5.10.004808
S68I68IatAatC11A.2.5.20.001572
S68I68IatAatC11A.23.10.000704
S68I68IatAatC11AY.1010.00049
S68I68IatAatC11AY.110.001339
S68I68IatAatC11AY.1110.000183
S68I68IatAatC11AY.116.10.000311
S68I68IatAatC11AY.120.10.000321
S68I68IatAatC11AY.120.20.001285
S68I68IatAatC11AY.170.008197
S68I68IatAatC11AY.4.10.000737
S68I68IatAatC11AY.4.30.000842
S68I68IatAatC11AY.4.40.000409
S68I68IatAatC11AY.46.40.000165
S68I68IatAatC11AY.5.10.003759
S68I68IatAatC11AY.510.000909
S68I68IatAatC11AY.580.000907
S68I68IatAatC11AY.630.000387
S68I68IatAatC11AY.640.000595
S68I68IatAatC11AY.70.000196
S68I68IatAatC11AY.720.001361
S68I68IatAatC11AY.770.001127
S68I68IatAatC11AY.830.001724
S68I68IatAatC11AY.860.00083
S68I68IatAatC11AY.870.000833
S68I68IatAatC11AY.91.10.004065
S68I68IatAatC11AZ.30.00152
S68I68IatAatC11B.1.1.1340.011364
S68I68IatAatC11B.1.1.1350.004695
S68I68IatAatC11B.1.1.1590.004673
S68I68IatAatC11B.1.1.1600.02381
S68I68IatAatC11B.1.1.1710.003676
S68I68IatAatC11B.1.1.1870.00885
S68I68IatAatC11B.1.1.1890.001513
S68I68IatAatC11B.1.1.2310.003096
S68I68IatAatC11B.1.1.2370.005405
S68I68IatAatC11B.1.1.2540.011236
S68I68IatAatC11B.1.1.2650.003155
S68I68IatAatC11B.1.1.330.000421
S68I68IatAatC11B.1.1.3480.000796
S68I68IatAatC11B.1.1.3510.002793
S68I68IatAatC11B.1.1.3740.002375
S68I68IatAatC11B.1.1.3750.011905
S68I68IatAatC11B.1.1.3880.045455
S68I68IatAatC11B.1.1.3890.006061
S68I68IatAatC11B.1.1.3970.002252
S68I68IatAatC11B.1.1.4160.000905
S68I68IatAatC11B.1.1.4170.002703
S68I68IatAatC11B.1.1.440.00241
S68I68IatAatC11B.1.1.4590.015385
S68I68IatAatC11B.1.1.4620.008621
S68I68IatAatC11B.1.1.550.012987
S68I68IatAatC11B.1.1.620.027027
S68I68IatAatC11B.1.1.630.000386
S68I68IatAatC11B.1.1.710.006061
S68I68IatAatC11B.1.1.990.02381
S68I68IatAatC11B.1.1260.001276
S68I68IatAatC11B.1.1280.000635
S68I68IatAatC11B.1.1400.018868
S68I68IatAatC11B.1.160.140.002119
S68I68IatAatC11B.1.160.160.000929
S68I68IatAatC11B.1.177.210.000076
S68I68IatAatC11B.1.177.330.001645
S68I68IatAatC11B.1.177.400.005155
S68I68IatAatC11B.1.177.450.000381
S68I68IatAatC11B.1.177.490.037037
S68I68IatAatC11B.1.177.730.000566
S68I68IatAatC11B.1.177.750.001041
S68I68IatAatC11B.1.177.810.000189
S68I68IatAatC11B.1.1990.004132
S68I68IatAatC11B.1.214.30.007143
S68I68IatAatC11B.1.2400.000216
S68I68IatAatC11B.1.2410.000812
S68I68IatAatC11B.1.2420.018868
S68I68IatAatC11B.1.258.160.001637
S68I68IatAatC11B.1.258.30.001675
S68I68IatAatC11B.1.2600.003344
S68I68IatAatC11B.1.3240.001605
S68I68IatAatC11B.1.351.30.000876
S68I68IatAatC11B.1.36.100.004785
S68I68IatAatC11B.1.36.220.001208
S68I68IatAatC11B.1.3610.001289
S68I68IatAatC11B.1.3620.001541
S68I68IatAatC11B.1.3820.008929
S68I68IatAatC11B.1.3980.002976
S68I68IatAatC11B.1.3990.001934
S68I68IatAatC11B.1.4000.000429
S68I68IatAatC11B.1.4060.006061
S68I68IatAatC11B.1.416.10.001563
S68I68IatAatC11B.1.4320.011236
S68I68IatAatC11B.1.4330.003195
S68I68IatAatC11B.1.438.10.000107
S68I68IatAatC11B.1.4410.009615
S68I68IatAatC11B.1.4460.02
S68I68IatAatC11B.1.4620.007246
S68I68IatAatC11B.1.4690.00361
S68I68IatAatC11B.1.4970.000315
S68I68IatAatC11B.1.4990.00105
S68I68IatAatC11B.1.5600.00463
S68I68IatAatC11B.1.5610.000397
S68I68IatAatC11B.1.5680.001111
S68I68IatAatC11B.1.5950.000261
S68I68IatAatC11B.1.617.30.002985
S68I68IatAatC11B.1.6310.003367
S68I68IatAatC11B.1.780.008547
S68I68IatAatC11B.1.810.021277
S68I68IatAatC11B.1.9.50.005682
S68I68IatAatC11B.280.003279
S68I68IatAatC11B.550.00295
S68I68IatAatC11C.160.00106
S68I68IatAatC11C.260.007353
S68I68IatAatC11C.350.000774
S68I68IatAatC11L.30.003546
S68I68IatAatC11N.50.001767
S68I68IatAatC11P.1.130.000898
S68I68IatAatC11P.20.000187
S68I68IatAatC11P.60.003145
S68I68IatAatC11W.20.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.