CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 1114 | I1114I | syn | atC | atT | 14279 | 14227 | 0.996358 | 24902-24904 | |
S | 1114 | I1114I | syn | atC | atA | 14279 | 52 | 0.00364171 | 24902-24904 |
Details of the mutation I1114I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 1114 | I1114I | atC | atT | 14227 | 14279 | All | 0.002721 |
S | 1114 | I1114I | atC | atA | 52 | 14279 | All | 0.00001 |
S | 1114 | I1114I | atC | atT | 3568 | 3580 | B.1.1.7 | 0.003194 |
S | 1114 | I1114I | atC | atA | 12 | 3580 | B.1.1.7 | 0.000011 |
S | 1114 | I1114I | atC | atT | 1611 | 1612 | AY.4 | 0.002507 |
S | 1114 | I1114I | atC | atA | 1 | 1612 | AY.4 | 0.000002 |
S | 1114 | I1114I | atC | atT | 1353 | 1353 | B.1.396 | 0.954834 |
S | 1114 | I1114I | atC | atT | 863 | 870 | B.1.617.2 | 0.00325 |
S | 1114 | I1114I | atC | atA | 7 | 870 | B.1.617.2 | 0.000026 |
S | 1114 | I1114I | atC | atT | 602 | 602 | AY.43 | 0.002667 |
S | 1114 | I1114I | atC | atT | 535 | 536 | B.1.2 | 0.004711 |
S | 1114 | I1114I | atC | atA | 1 | 536 | B.1.2 | 0.000009 |
S | 1114 | I1114I | atC | atT | 485 | 488 | B.1 | 0.004442 |
S | 1114 | I1114I | atC | atA | 3 | 488 | B.1 | 0.000027 |
S | 1114 | I1114I | atC | atT | 466 | 467 | AY.25 | 0.002803 |
S | 1114 | I1114I | atC | atA | 1 | 467 | AY.25 | 0.000006 |
S | 1114 | I1114I | atC | atT | 299 | 299 | B.1.1 | 0.005424 |
S | 1114 | I1114I | atC | atT | 276 | 276 | AY.4.2 | 0.005986 |
S | 1114 | I1114I | atC | atT | 228 | 228 | AY.34 | 0.022108 |
S | 1114 | I1114I | atC | atT | 224 | 225 | AY.103 | 0.001391 |
S | 1114 | I1114I | atC | atA | 1 | 225 | AY.103 | 0.000006 |
S | 1114 | I1114I | atC | atT | 199 | 199 | AY.23 | 0.01388 |
S | 1114 | I1114I | atC | atT | 181 | 184 | AY.44 | 0.001102 |
S | 1114 | I1114I | atC | atA | 3 | 184 | AY.44 | 0.000018 |
S | 1114 | I1114I | atC | atT | 171 | 171 | AY.3 | 0.001701 |
S | 1114 | I1114I | atC | atT | 125 | 125 | B.1.1.251 | 0.992063 |
S | 1114 | I1114I | atC | atT | 97 | 97 | AY.46.6 | 0.007004 |
S | 1114 | I1114I | atC | atT | 93 | 93 | AY.120 | 0.003458 |
S | 1114 | I1114I | atC | atT | 93 | 93 | B.1.177 | 0.001225 |
S | 1114 | I1114I | atC | atT | 88 | 88 | P.1 | 0.001386 |
S | 1114 | I1114I | atC | atT | 87 | 87 | B.1.243 | 0.006054 |
S | 1114 | I1114I | atC | atT | 78 | 78 | AY.9.2 | 0.002865 |
S | 1114 | I1114I | atC | atT | 75 | 76 | B.1.596 | 0.006535 |
S | 1114 | I1114I | atC | atA | 1 | 76 | B.1.596 | 0.000087 |
S | 1114 | I1114I | atC | atT | 61 | 61 | AY.102 | 0.001617 |
S | 1114 | I1114I | atC | atT | 60 | 60 | AY.99.2 | 0.005529 |
S | 1114 | I1114I | atC | atT | 59 | 59 | AY.5 | 0.001218 |
S | 1114 | I1114I | atC | atT | 58 | 58 | AY.47 | 0.001804 |
S | 1114 | I1114I | atC | atT | 58 | 58 | P.5 | 0.794521 |
S | 1114 | I1114I | atC | atT | 56 | 56 | B.1.526 | 0.001316 |
S | 1114 | I1114I | atC | atT | 55 | 55 | AY.119 | 0.001942 |
S | 1114 | I1114I | atC | atT | 53 | 53 | B.1.241 | 0.043019 |
S | 1114 | I1114I | atC | atT | 49 | 52 | AY.26 | 0.001387 |
S | 1114 | I1114I | atC | atA | 3 | 52 | AY.26 | 0.000085 |
S | 1114 | I1114I | atC | atT | 49 | 49 | B.1.160 | 0.001528 |
S | 1114 | I1114I | atC | atT | 48 | 48 | AY.39.1 | 0.001901 |
S | 1114 | I1114I | atC | atT | 48 | 48 | B.46 | 1 |
S | 1114 | I1114I | atC | atT | 48 | 48 | C.37 | 0.005571 |
S | 1114 | I1114I | atC | atT | 47 | 47 | Q.8 | 0.007751 |
S | 1114 | I1114I | atC | atT | 44 | 44 | B.1.1.318 | 0.013277 |
S | 1114 | I1114I | atC | atT | 44 | 44 | B.1.177.9 | 0.058589 |
S | 1114 | I1114I | atC | atT | 42 | 42 | B.1.1.28 | 0.013072 |
S | 1114 | I1114I | atC | atT | 38 | 38 | B.1.1.1 | 0.012414 |
S | 1114 | I1114I | atC | atT | 35 | 35 | AY.39 | 0.000865 |
S | 1114 | I1114I | atC | atT | 34 | 34 | AY.117 | 0.002874 |
S | 1114 | I1114I | atC | atT | 27 | 32 | AY.20 | 0.001049 |
S | 1114 | I1114I | atC | atA | 5 | 32 | AY.20 | 0.000194 |
S | 1114 | I1114I | atC | atT | 32 | 32 | B.1.427 | 0.001616 |
S | 1114 | I1114I | atC | atT | 31 | 31 | AY.33 | 0.00207 |
S | 1114 | I1114I | atC | atT | 31 | 31 | B.1.1.326 | 0.054577 |
S | 1114 | I1114I | atC | atT | 31 | 31 | B.1.258 | 0.002063 |
S | 1114 | I1114I | atC | atT | 29 | 29 | B.1.1.70 | 0.009891 |
S | 1114 | I1114I | atC | atT | 29 | 29 | B.1.177.60 | 0.006335 |
S | 1114 | I1114I | atC | atT | 29 | 29 | B.1.221 | 0.00206 |
S | 1114 | I1114I | atC | atT | 29 | 29 | B.1.240 | 0.006251 |
S | 1114 | I1114I | atC | atT | 28 | 28 | AY.36 | 0.00415 |
S | 1114 | I1114I | atC | atT | 28 | 28 | B.1.351 | 0.000832 |
S | 1114 | I1114I | atC | atT | 28 | 28 | B.1.599 | 0.10219 |
S | 1114 | I1114I | atC | atT | 27 | 27 | AY.29 | 0.000426 |
S | 1114 | I1114I | atC | atT | 27 | 27 | AY.74 | 0.003122 |
S | 1114 | I1114I | atC | atT | 26 | 26 | B.1.177.81 | 0.004922 |
S | 1114 | I1114I | atC | atT | 25 | 25 | AY.100 | 0.00115 |
S | 1114 | I1114I | atC | atT | 25 | 25 | AY.111 | 0.004579 |
S | 1114 | I1114I | atC | atT | 25 | 25 | AY.42 | 0.001006 |
S | 1114 | I1114I | atC | atT | 24 | 24 | B.1.429 | 0.000565 |
S | 1114 | I1114I | atC | atT | 23 | 23 | AY.61 | 0.00241 |
S | 1114 | I1114I | atC | atT | 23 | 23 | B.1.1.348 | 0.018312 |
S | 1114 | I1114I | atC | atT | 21 | 21 | B.1.1.519 | 0.000834 |
S | 1114 | I1114I | atC | atT | 19 | 19 | AY.98 | 0.001501 |
S | 1114 | I1114I | atC | atT | 17 | 17 | AY.66 | 0.018182 |
S | 1114 | I1114I | atC | atT | 17 | 17 | AY.90 | 0.011636 |
S | 1114 | I1114I | atC | atT | 16 | 16 | AY.98.1 | 0.000775 |
S | 1114 | I1114I | atC | atT | 16 | 16 | B.1.177.12 | 0.002427 |
S | 1114 | I1114I | atC | atT | 15 | 15 | A.2.5 | 0.007485 |
S | 1114 | I1114I | atC | atT | 15 | 15 | B.1.595 | 0.003914 |
S | 1114 | I1114I | atC | atT | 14 | 14 | B.1.621 | 0.001239 |
S | 1114 | I1114I | atC | atT | 13 | 13 | AY.110 | 0.001465 |
S | 1114 | I1114I | atC | atT | 13 | 13 | B.1.1.44 | 0.031325 |
S | 1114 | I1114I | atC | atT | 13 | 13 | B.1.397 | 0.063107 |
S | 1114 | I1114I | atC | atT | 13 | 13 | P.1.14 | 0.000621 |
S | 1114 | I1114I | atC | atT | 13 | 13 | P.2 | 0.002426 |
S | 1114 | I1114I | atC | atT | 12 | 12 | B.1.1.317 | 0.00494 |
S | 1114 | I1114I | atC | atT | 12 | 12 | B.1.409 | 0.009375 |
S | 1114 | I1114I | atC | atT | 11 | 11 | A.29 | 0.058511 |
S | 1114 | I1114I | atC | atT | 11 | 11 | AY.45 | 0.001339 |
S | 1114 | I1114I | atC | atT | 10 | 10 | AY.15 | 0.022222 |
S | 1114 | I1114I | atC | atT | 10 | 10 | AY.75 | 0.00056 |
S | 1114 | I1114I | atC | atT | 10 | 10 | B.1.258.17 | 0.00104 |
S | 1114 | I1114I | atC | atT | 9 | 9 | AY.118 | 0.000564 |
S | 1114 | I1114I | atC | atT | 9 | 9 | AY.121 | 0.001218 |
S | 1114 | I1114I | atC | atT | 9 | 9 | AY.48 | 0.004186 |
S | 1114 | I1114I | atC | atT | 9 | 9 | AY.6 | 0.00037 |
S | 1114 | I1114I | atC | atT | 9 | 9 | B.1.637 | 0.000658 |
S | 1114 | I1114I | atC | atT | 8 | 8 | B.1.1.464 | 0.011782 |
S | 1114 | I1114I | atC | atT | 8 | 8 | B.1.537 | 0.16 |
S | 1114 | I1114I | atC | atT | 7 | 7 | AY.41 | 0.002058 |
S | 1114 | I1114I | atC | atT | 7 | 7 | B.1.1.141 | 0.014085 |
S | 1114 | I1114I | atC | atT | 7 | 7 | B.1.617.1 | 0.000903 |
S | 1114 | I1114I | atC | atT | 7 | 7 | C.26 | 0.051471 |
S | 1114 | I1114I | atC | atT | 6 | 6 | A | 0.002322 |
S | 1114 | I1114I | atC | atT | 6 | 6 | AY.106 | 0.002009 |
S | 1114 | I1114I | atC | atT | 6 | 6 | AY.37 | 0.001896 |
S | 1114 | I1114I | atC | atT | 6 | 6 | AY.9.1 | 0.000502 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.1.214 | 0.000333 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.1.291 | 0.004454 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.234 | 0.000792 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.351.2 | 0.001815 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.36 | 0.000875 |
S | 1114 | I1114I | atC | atT | 6 | 6 | B.1.618 | 0.024194 |
S | 1114 | I1114I | atC | atT | 6 | 6 | C.36 | 0.005464 |
S | 1114 | I1114I | atC | atT | 6 | 6 | R.1 | 0.00054 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.1 | 0.001979 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.107 | 0.00233 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.120.1 | 0.001605 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.27 | 0.000324 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.58 | 0.004537 |
S | 1114 | I1114I | atC | atT | 5 | 5 | AY.65 | 0.002665 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B | 0.000639 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.177.40 | 0.025773 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.177.57 | 0.001405 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.311 | 0.001373 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.36.29 | 0.002587 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.404 | 0.00651 |
S | 1114 | I1114I | atC | atT | 5 | 5 | B.1.525 | 0.000566 |
S | 1114 | I1114I | atC | atT | 5 | 5 | C.36.3 | 0.002836 |
S | 1114 | I1114I | atC | atT | 4 | 4 | 0.222222 | |
S | 1114 | I1114I | atC | atT | 4 | 4 | A.1 | 0.001127 |
S | 1114 | I1114I | atC | atT | 4 | 4 | AE.8 | 0.001956 |
S | 1114 | I1114I | atC | atT | 4 | 4 | AY.12 | 0.001264 |
S | 1114 | I1114I | atC | atT | 4 | 4 | AY.16.1 | 0.00188 |
S | 1114 | I1114I | atC | atT | 4 | 4 | AY.39.1.1 | 0.002899 |
S | 1114 | I1114I | atC | atT | 4 | 4 | AY.54 | 0.000381 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.1.222 | 0.000816 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.1.306 | 0.001754 |
S | 1114 | I1114I | atC | atA | 4 | 4 | B.1.177.54 | 0.002426 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.177.65 | 0.002661 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.298 | 0.008457 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.426 | 0.004036 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.561 | 0.001588 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.564 | 0.001704 |
S | 1114 | I1114I | atC | atT | 4 | 4 | B.1.568 | 0.004444 |
S | 1114 | I1114I | atC | atT | 4 | 4 | Q.1 | 0.000505 |
S | 1114 | I1114I | atC | atT | 3 | 3 | AY.114 | 0.000693 |
S | 1114 | I1114I | atC | atT | 3 | 3 | AY.3.1 | 0.000256 |
S | 1114 | I1114I | atC | atT | 3 | 3 | AY.46 | 0.000312 |
S | 1114 | I1114I | atC | atT | 3 | 3 | AY.46.5 | 0.000595 |
S | 1114 | I1114I | atC | atT | 3 | 3 | AY.88 | 0.002653 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.1.39 | 0.001529 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.1.50 | 0.002037 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.1.63 | 0.001157 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.139 | 0.002199 |
S | 1114 | I1114I | atC | atT | 2 | 3 | B.1.177.21 | 0.000153 |
S | 1114 | I1114I | atC | atA | 1 | 3 | B.1.177.21 | 0.000076 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.177.4 | 0.000633 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.177.86 | 0.00055 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.206 | 0.002447 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.214.2 | 0.001799 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.36.38 | 0.004926 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.361 | 0.003866 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.362 | 0.004622 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.369 | 0.000856 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.580 | 0.012195 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.609 | 0.001438 |
S | 1114 | I1114I | atC | atT | 3 | 3 | B.1.78 | 0.025641 |
S | 1114 | I1114I | atC | atT | 3 | 3 | C.17 | 0.166667 |
S | 1114 | I1114I | atC | atT | 3 | 3 | D.2 | 0.000225 |
S | 1114 | I1114I | atC | atT | 3 | 3 | P.1.15 | 0.000697 |
S | 1114 | I1114I | atC | atT | 3 | 3 | P.1.9 | 0.014423 |
S | 1114 | I1114I | atC | atT | 2 | 2 | A.23.1 | 0.001408 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.113 | 0.000285 |
S | 1114 | I1114I | atC | atT | 1 | 2 | AY.13 | 0.000161 |
S | 1114 | I1114I | atC | atA | 1 | 2 | AY.13 | 0.000161 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.24 | 0.000862 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.32 | 0.001065 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.34.1 | 0.00102 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.5.1 | 0.007519 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.62 | 0.000871 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.7 | 0.000392 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.70 | 0.000417 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.72 | 0.002721 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.84 | 0.000875 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.85 | 0.000854 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.86 | 0.00166 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.9 | 0.000135 |
S | 1114 | I1114I | atC | atT | 2 | 2 | AY.94 | 0.000885 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.1.220 | 0.003717 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.1.25 | 0.001137 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.1.33 | 0.000842 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.1.397 | 0.004505 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.1.434 | 0.000697 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.111 | 0.00235 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.160.16 | 0.001859 |
S | 1114 | I1114I | atC | atT | 1 | 2 | B.1.177.23 | 0.003236 |
S | 1114 | I1114I | atC | atA | 1 | 2 | B.1.177.23 | 0.003236 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.239 | 0.002442 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.258.14 | 0.001961 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.265 | 0.002541 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.329 | 0.001215 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.371 | 0.002245 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.375 | 0.001639 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.408 | 0.00738 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.470 | 0.002809 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.499 | 0.002101 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.540 | 0.019417 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.577 | 0.001375 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.597 | 0.009259 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.606 | 0.012048 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.1.627 | 0.00404 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.4 | 0.004415 |
S | 1114 | I1114I | atC | atT | 2 | 2 | B.55 | 0.0059 |
S | 1114 | I1114I | atC | atT | 2 | 2 | C.18 | 0.005181 |
S | 1114 | I1114I | atC | atT | 2 | 2 | N.5 | 0.003534 |
S | 1114 | I1114I | atC | atT | 2 | 2 | P.1.12 | 0.000968 |
S | 1114 | I1114I | atC | atT | 2 | 2 | P.1.17 | 0.000324 |
S | 1114 | I1114I | atC | atT | 1 | 1 | A.2.2 | 0.001689 |
S | 1114 | I1114I | atC | atT | 1 | 1 | A.27 | 0.001656 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.101 | 0.00049 |
S | 1114 | I1114I | atC | atA | 1 | 1 | AY.108 | 0.001103 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.116 | 0.000287 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.116.1 | 0.000311 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.14 | 0.000088 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.19 | 0.00114 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.2 | 0.000356 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.29.1 | 0.000221 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.30 | 0.000396 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.35 | 0.000233 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.38 | 0.000499 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.4.4 | 0.000409 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.4.5 | 0.000107 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.46.4 | 0.000165 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.5.4 | 0.000277 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.52 | 0.000814 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.55 | 0.000917 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.57 | 0.000656 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.63 | 0.000387 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.67 | 0.000464 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.68 | 0.000274 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
S | 1114 | I1114I | atC | atA | 1 | 1 | AY.79 | 0.001211 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.80 | 0.001129 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.91 | 0.00073 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.92 | 0.000287 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.99 | 0.001049 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AY.99.1 | 0.001553 |
S | 1114 | I1114I | atC | atT | 1 | 1 | AZ.2 | 0.000821 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.10 | 0.001115 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.113 | 0.006993 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.163 | 0.007634 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.176 | 0.000439 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.189 | 0.001513 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.234 | 0.012048 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.249 | 0.071429 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.329 | 0.003846 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.335 | 0.012987 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.345 | 0.043478 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.389 | 0.006061 |
S | 1114 | I1114I | atC | atA | 1 | 1 | B.1.1.402 | 0.011111 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.440 | 0.011765 |
S | 1114 | I1114I | atC | atA | 1 | 1 | B.1.1.448 | 0.002033 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.528 | 0.004808 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.54 | 0.003021 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.1.58 | 0.005376 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.104 | 0.00369 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.110.3 | 0.000718 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.126 | 0.001276 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.147 | 0.000756 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.160.30 | 0.002976 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.18 | 0.00116 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.20 | 0.001517 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.45 | 0.000381 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.58 | 0.001332 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.62 | 0.001192 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.7 | 0.000165 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.84 | 0.006667 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.177.85 | 0.005435 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.203 | 0.0625 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.221.4 | 0.004167 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.235 | 0.002519 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.236 | 0.002053 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.258.6 | 0.019608 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.264 | 0.012346 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.279 | 0.000514 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.284 | 0.013158 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.330 | 0.028571 |
S | 1114 | I1114I | atC | atA | 1 | 1 | B.1.332 | 0.003497 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.351.3 | 0.000876 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.36.17 | 0.000494 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.36.18 | 0.00042 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.36.37 | 0.002778 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.362.2 | 0.004717 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.370 | 0.008 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.378 | 0.006849 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.383 | 0.009009 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.385 | 0.010638 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.416.1 | 0.001563 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.428 | 0.00102 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.443 | 0.004673 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.453 | 0.003236 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.466.2 | 0.000391 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.471 | 0.002732 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.473 | 0.019231 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.505 | 0.004386 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.521 | 0.004975 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.558 | 0.004566 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.566 | 0.019231 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.569 | 0.014493 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.575 | 0.000303 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.576 | 0.000907 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.581 | 0.009434 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.588 | 0.00091 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.590 | 0.004545 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.602 | 0.006536 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.610 | 0.003546 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.612 | 0.002653 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.621.1 | 0.000506 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.630 | 0.005236 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.635 | 0.017544 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.1.94 | 0.027027 |
S | 1114 | I1114I | atC | atT | 1 | 1 | B.23 | 0.002924 |
S | 1114 | I1114I | atC | atA | 1 | 1 | B.6 | 0.00091 |
S | 1114 | I1114I | atC | atA | 1 | 1 | B.6.6 | 0.000889 |
S | 1114 | I1114I | atC | atT | 1 | 1 | C.16 | 0.00106 |
S | 1114 | I1114I | atC | atT | 1 | 1 | C.23 | 0.005814 |
S | 1114 | I1114I | atC | atT | 1 | 1 | N.2 | 0.038462 |
S | 1114 | I1114I | atC | atT | 1 | 1 | N.3 | 0.005814 |
S | 1114 | I1114I | atC | atT | 1 | 1 | N.6 | 0.007092 |
S | 1114 | I1114I | atC | atT | 1 | 1 | P.1.13 | 0.000898 |
S | 1114 | I1114I | atC | atT | 1 | 1 | P.1.16 | 0.000374 |
S | 1114 | I1114I | atC | atT | 1 | 1 | P.1.7 | 0.000319 |
S | 1114 | I1114I | atC | atT | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|