CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 655 | H655Y | nonsyn | Cat | Tat | 122830 | 122823 | 0.999943 | 23525-23527 | |
S | 655 | H655Y | nonsyn | CaT | TaC | 122830 | 7 | 0.0000569893 | 23525-23527 |
Details of the mutation H655Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 655 | H655Y | Cat | Tat | 122823 | 122830 | All | 0.023491 |
S | 655 | H655Y | CaT | TaC | 7 | 122830 | All | 0.000001 |
S | 655 | H655Y | Cat | Tat | 62714 | 62717 | P.1 | 0.987995 |
S | 655 | H655Y | CaT | TaC | 3 | 62717 | P.1 | 0.000047 |
S | 655 | H655Y | Cat | Tat | 20714 | 20717 | P.1.14 | 0.990153 |
S | 655 | H655Y | CaT | TaC | 3 | 20717 | P.1.14 | 0.000143 |
S | 655 | H655Y | Cat | Tat | 6138 | 6138 | P.1.17 | 0.992883 |
S | 655 | H655Y | Cat | Tat | 4249 | 4249 | P.1.15 | 0.987221 |
S | 655 | H655Y | Cat | Tat | 3686 | 3686 | P.1.10 | 0.993263 |
S | 655 | H655Y | Cat | Tat | 3099 | 3100 | P.1.7 | 0.989464 |
S | 655 | H655Y | CaT | TaC | 1 | 3100 | P.1.7 | 0.000319 |
S | 655 | H655Y | Cat | Tat | 3021 | 3021 | P.1.1 | 0.959657 |
S | 655 | H655Y | Cat | Tat | 2614 | 2614 | P.1.16 | 0.977927 |
S | 655 | H655Y | Cat | Tat | 1921 | 1921 | P.1.12 | 0.929816 |
S | 655 | H655Y | Cat | Tat | 1283 | 1283 | B.1.1.7 | 0.001149 |
S | 655 | H655Y | Cat | Tat | 1139 | 1139 | P.1.17.1 | 0.9965 |
S | 655 | H655Y | Cat | Tat | 1108 | 1108 | P.1.13 | 0.995508 |
S | 655 | H655Y | Cat | Tat | 1024 | 1024 | P.1.4 | 1 |
S | 655 | H655Y | Cat | Tat | 859 | 859 | P.1.2 | 0.993064 |
S | 655 | H655Y | Cat | Tat | 595 | 595 | A.27 | 0.985099 |
S | 655 | H655Y | Cat | Tat | 510 | 510 | P.1.6 | 0.992218 |
S | 655 | H655Y | Cat | Tat | 482 | 482 | AY.4 | 0.00075 |
S | 655 | H655Y | Cat | Tat | 481 | 481 | B.1.160.7 | 1 |
S | 655 | H655Y | Cat | Tat | 423 | 423 | B.1.1.37 | 0.081581 |
S | 655 | H655Y | Cat | Tat | 378 | 378 | A.28 | 1 |
S | 655 | H655Y | Cat | Tat | 306 | 306 | B.1 | 0.002803 |
S | 655 | H655Y | Cat | Tat | 281 | 281 | B.1.617.2 | 0.001058 |
S | 655 | H655Y | Cat | Tat | 240 | 240 | AY.45 | 0.029204 |
S | 655 | H655Y | Cat | Tat | 226 | 226 | B.1.160.33 | 1 |
S | 655 | H655Y | Cat | Tat | 225 | 225 | C.1.2 | 0.957447 |
S | 655 | H655Y | Cat | Tat | 209 | 209 | P.1.8 | 1 |
S | 655 | H655Y | Cat | Tat | 207 | 207 | P.1.9 | 0.995192 |
S | 655 | H655Y | Cat | Tat | 200 | 200 | AY.44 | 0.001217 |
S | 655 | H655Y | Cat | Tat | 193 | 193 | B.1.1 | 0.003501 |
S | 655 | H655Y | Cat | Tat | 189 | 189 | B.1.630 | 0.989529 |
S | 655 | H655Y | Cat | Tat | 188 | 188 | A.29 | 1 |
S | 655 | H655Y | Cat | Tat | 178 | 178 | B.1.1.157 | 0.162557 |
S | 655 | H655Y | Cat | Tat | 171 | 171 | B.1.2 | 0.001506 |
S | 655 | H655Y | Cat | Tat | 169 | 169 | AY.74 | 0.019544 |
S | 655 | H655Y | Cat | Tat | 146 | 146 | AY.120 | 0.005428 |
S | 655 | H655Y | Cat | Tat | 145 | 145 | AY.3 | 0.001442 |
S | 655 | H655Y | Cat | Tat | 141 | 141 | B.1.1.525 | 0.770492 |
S | 655 | H655Y | Cat | Tat | 132 | 132 | B.1.632 | 0.885906 |
S | 655 | H655Y | Cat | Tat | 118 | 118 | AY.43 | 0.000523 |
S | 655 | H655Y | Cat | Tat | 115 | 115 | P.1.10.1 | 0.934959 |
S | 655 | H655Y | Cat | Tat | 98 | 98 | P.1.11 | 1 |
S | 655 | H655Y | Cat | Tat | 96 | 96 | B.1.429 | 0.002259 |
S | 655 | H655Y | Cat | Tat | 92 | 92 | AY.103 | 0.000571 |
S | 655 | H655Y | Cat | Tat | 92 | 92 | AY.25 | 0.000553 |
S | 655 | H655Y | Cat | Tat | 79 | 79 | AY.39 | 0.001952 |
S | 655 | H655Y | Cat | Tat | 78 | 78 | B.1.177 | 0.001027 |
S | 655 | H655Y | Cat | Tat | 71 | 71 | AY.102 | 0.001882 |
S | 655 | H655Y | Cat | Tat | 53 | 53 | A | 0.020511 |
S | 655 | H655Y | Cat | Tat | 49 | 49 | B.1.1.434 | 0.017079 |
S | 655 | H655Y | Cat | Tat | 43 | 43 | AY.5 | 0.000888 |
S | 655 | H655Y | Cat | Tat | 41 | 41 | B.1.616 | 1 |
S | 655 | H655Y | Cat | Tat | 37 | 37 | C.4 | 0.37 |
S | 655 | H655Y | Cat | Tat | 36 | 36 | AY.29 | 0.000568 |
S | 655 | H655Y | Cat | Tat | 35 | 35 | B.1.160 | 0.001092 |
S | 655 | H655Y | Cat | Tat | 34 | 34 | AY.47 | 0.001058 |
S | 655 | H655Y | Cat | Tat | 34 | 34 | B.1.1.28 | 0.010582 |
S | 655 | H655Y | Cat | Tat | 33 | 33 | B | 0.004218 |
S | 655 | H655Y | Cat | Tat | 33 | 33 | C.36.3.1 | 0.089674 |
S | 655 | H655Y | Cat | Tat | 33 | 33 | C.37 | 0.00383 |
S | 655 | H655Y | Cat | Tat | 30 | 30 | AY.46.6 | 0.002166 |
S | 655 | H655Y | Cat | Tat | 30 | 30 | B.1.596 | 0.002614 |
S | 655 | H655Y | Cat | Tat | 29 | 29 | P.1.3 | 1 |
S | 655 | H655Y | Cat | Tat | 28 | 28 | B.1.243 | 0.001948 |
S | 655 | H655Y | Cat | Tat | 25 | 25 | B.1.427 | 0.001262 |
S | 655 | H655Y | Cat | Tat | 24 | 24 | B.1.1.519 | 0.000953 |
S | 655 | H655Y | Cat | Tat | 24 | 24 | P.1.10.2 | 1 |
S | 655 | H655Y | Cat | Tat | 23 | 23 | A.2.4 | 0.077441 |
S | 655 | H655Y | Cat | Tat | 23 | 23 | AY.20 | 0.000894 |
S | 655 | H655Y | Cat | Tat | 23 | 23 | B.1.214.2 | 0.013789 |
S | 655 | H655Y | Cat | Tat | 23 | 23 | B.1.351 | 0.000684 |
S | 655 | H655Y | Cat | Tat | 21 | 21 | AY.4.2 | 0.000455 |
S | 655 | H655Y | Cat | Tat | 21 | 21 | B.1.1.528 | 0.100962 |
S | 655 | H655Y | Cat | Tat | 21 | 21 | B.1.617.3 | 0.062687 |
S | 655 | H655Y | Cat | Tat | 20 | 20 | A.2.5 | 0.00998 |
S | 655 | H655Y | Cat | Tat | 20 | 20 | AY.100 | 0.00092 |
S | 655 | H655Y | Cat | Tat | 19 | 19 | B.1.621 | 0.001682 |
S | 655 | H655Y | Cat | Tat | 19 | 19 | R.1 | 0.00171 |
S | 655 | H655Y | Cat | Tat | 18 | 18 | B.1.526 | 0.000423 |
S | 655 | H655Y | Cat | Tat | 17 | 17 | B.1.438 | 0.111111 |
S | 655 | H655Y | Cat | Tat | 16 | 16 | AY.116 | 0.004588 |
S | 655 | H655Y | Cat | Tat | 16 | 16 | AY.118 | 0.001002 |
S | 655 | H655Y | Cat | Tat | 16 | 16 | AY.33 | 0.001068 |
S | 655 | H655Y | Cat | Tat | 16 | 16 | B.1.1.214 | 0.000887 |
S | 655 | H655Y | Cat | Tat | 15 | 15 | B.1.1.348 | 0.011943 |
S | 655 | H655Y | Cat | Tat | 14 | 14 | AY.9.2 | 0.000514 |
S | 655 | H655Y | Cat | Tat | 14 | 14 | B.1.1.284 | 0.001504 |
S | 655 | H655Y | Cat | Tat | 14 | 14 | B.1.1.98 | 0.259259 |
S | 655 | H655Y | Cat | Tat | 14 | 14 | B.1.165 | 0.166667 |
S | 655 | H655Y | Cat | Tat | 14 | 14 | B.1.221 | 0.000994 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | AY.111 | 0.002381 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | B.1.1.189 | 0.019667 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | B.1.1.294 | 0.016456 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | B.1.177.36 | 0.209677 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | B.1.177.81 | 0.002461 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | B.1.466.2 | 0.005086 |
S | 655 | H655Y | Cat | Tat | 13 | 13 | P.1.5 | 1 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | AY.119 | 0.000424 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | AY.26 | 0.00034 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | AY.42 | 0.000483 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | B.1.1.228 | 0.036585 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | B.1.564.1 | 0.018927 |
S | 655 | H655Y | Cat | Tat | 12 | 12 | B.31 | 0.044776 |
S | 655 | H655Y | Cat | Tat | 11 | 11 | AY.5.4 | 0.003044 |
S | 655 | H655Y | Cat | Tat | 11 | 11 | B.1.1.222 | 0.002244 |
S | 655 | H655Y | Cat | Tat | 11 | 11 | B.1.110.3 | 0.007902 |
S | 655 | H655Y | Cat | Tat | 11 | 11 | P.2 | 0.002053 |
S | 655 | H655Y | Cat | Tat | 10 | 10 | AY.98.1 | 0.000484 |
S | 655 | H655Y | Cat | Tat | 10 | 10 | B.1.1.50 | 0.006789 |
S | 655 | H655Y | Cat | Tat | 10 | 10 | B.1.638 | 0.526316 |
S | 655 | H655Y | Cat | Tat | 9 | 9 | AY.14 | 0.000792 |
S | 655 | H655Y | Cat | Tat | 9 | 9 | AY.9.1 | 0.000754 |
S | 655 | H655Y | Cat | Tat | 9 | 9 | B.1.1.153 | 0.009858 |
S | 655 | H655Y | Cat | Tat | 9 | 9 | B.1.258 | 0.000599 |
S | 655 | H655Y | Cat | Tat | 9 | 9 | B.1.349 | 0.006433 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | AY.35 | 0.001864 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | B.1.1.448 | 0.01626 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | B.1.177.4 | 0.001688 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | B.1.36 | 0.001167 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | B.1.389 | 0.008016 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | B.1.617.1 | 0.001032 |
S | 655 | H655Y | Cat | Tat | 8 | 8 | D.2 | 0.0006 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | A.30 | 1 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | AY.117 | 0.000592 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | AY.121 | 0.000947 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | AY.39.1 | 0.000277 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | AY.98 | 0.000553 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | B.1.234 | 0.000924 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | B.1.438.1 | 0.000751 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | B.1.574 | 0.015054 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | B.1.635 | 0.122807 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | B.1.637 | 0.000512 |
S | 655 | H655Y | Cat | Tat | 7 | 7 | Q.8 | 0.001154 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | A.1 | 0.001691 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | AY.29.1 | 0.001323 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | AY.3.1 | 0.000512 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | AY.6 | 0.000247 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | B.1.1.39 | 0.003058 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | B.1.177.33 | 0.009868 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | B.1.177.60 | 0.001311 |
S | 655 | H655Y | Cat | Tat | 6 | 6 | P.5 | 0.082192 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | A.5 | 0.009615 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | AY.113 | 0.000712 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | AY.34 | 0.000485 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | AY.38 | 0.002496 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | AY.9 | 0.000338 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.1.10 | 0.005574 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.1.54 | 0.015106 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.1.63 | 0.001929 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.240 | 0.001078 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.241 | 0.004058 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.311 | 0.001373 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.36.31 | 0.008757 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.367 | 0.003962 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.1.577 | 0.003436 |
S | 655 | H655Y | Cat | Tat | 5 | 5 | B.4 | 0.011038 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.16 | 0.001519 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.22 | 0.008368 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.36 | 0.000593 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.41 | 0.001176 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.46 | 0.000416 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.5.3 | 0.00135 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.59 | 0.002119 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | AY.75 | 0.000224 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | B.1.1.265 | 0.012618 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | B.1.1.33 | 0.001684 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | B.1.177.3 | 0.030534 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | B.1.456 | 0.013072 |
S | 655 | H655Y | Cat | Tat | 4 | 4 | B.1.623 | 0.002146 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.106 | 0.001005 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.109 | 0.002219 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.27 | 0.000194 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.40 | 0.002893 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.54 | 0.000286 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.62 | 0.001307 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.71 | 0.001425 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.79 | 0.003632 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.91 | 0.002191 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | AY.92 | 0.000862 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.161 | 0.010601 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.220 | 0.005576 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.269 | 0.00406 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.303 | 0.008287 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.318 | 0.000905 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.1.409 | 0.008499 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.126 | 0.003827 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.139 | 0.002199 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.160.24 | 0.013274 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.210 | 0.006397 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.258.17 | 0.000312 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.324 | 0.004815 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.351.2 | 0.000908 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.36.29 | 0.001552 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.369 | 0.000856 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.508 | 0.076923 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.517 | 0.001281 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.525 | 0.000339 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.1.575 | 0.00091 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.40 | 0.001093 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.55 | 0.00885 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | B.6 | 0.00273 |
S | 655 | H655Y | Cat | Tat | 3 | 3 | P.3 | 0.004785 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | A.2 | 0.001324 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | A.2.3 | 0.009479 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AE.1 | 0.022727 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.23 | 0.000139 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.23.1 | 0.000835 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.28 | 0.003781 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.48 | 0.00093 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.53 | 0.000575 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.61 | 0.00021 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.75.1 | 0.000361 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | AY.99.2 | 0.000184 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.174 | 0.006757 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.306 | 0.000877 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.311 | 0.000716 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.372 | 0.001377 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.402 | 0.022222 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.433 | 0.002849 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.1.462 | 0.017241 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.127 | 0.004396 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.157 | 0.00597 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.160.12 | 0.012821 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.177.7 | 0.00033 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.177.77 | 0.001452 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.177.86 | 0.000367 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.239 | 0.002442 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.265 | 0.002541 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.289 | 0.005319 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.304 | 0.046512 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.343 | 0.041667 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.36.10 | 0.009569 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.36.39 | 0.004435 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.375 | 0.001639 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.380 | 0.013245 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.423 | 0.020408 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.462 | 0.014493 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.499 | 0.002101 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.582 | 0.000981 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.588 | 0.00182 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.595.1 | 0.011696 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.1.609 | 0.000959 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.10 | 0.016529 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.23 | 0.005848 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | B.52 | 0.020202 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | C.1 | 0.004785 |
S | 655 | H655Y | Cat | Tat | 2 | 2 | C.16 | 0.002121 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | A.2.2 | 0.001689 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | A.23.1 | 0.000704 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | A.3 | 0.002096 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AE.5 | 0.018519 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AE.8 | 0.000489 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AP.1 | 0.001502 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AU.3 | 0.00211 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.101 | 0.00049 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.105 | 0.000643 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.107 | 0.000466 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.110 | 0.000113 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.114 | 0.000231 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.12 | 0.000316 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.120.1 | 0.000321 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.2 | 0.000356 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.24 | 0.000431 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.32 | 0.000532 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.46.2 | 0.000635 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.46.3 | 0.000934 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.46.4 | 0.000165 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.49 | 0.003195 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.56 | 0.001605 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.69 | 0.000187 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.7 | 0.000196 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.78 | 0.001541 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.81 | 0.001992 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.84 | 0.000437 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.89 | 0.004902 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.93 | 0.000273 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.95 | 0.000761 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AY.99 | 0.001049 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | AZ.2 | 0.000821 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.115 | 0.008929 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.141 | 0.002012 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.176 | 0.000439 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.198 | 0.001468 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.207 | 0.001182 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.216 | 0.00089 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.217 | 0.003636 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.219 | 0.005 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.225 | 0.007194 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.231 | 0.003096 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.241 | 0.00207 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.255 | 0.00303 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.270 | 0.010309 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.273 | 0.006757 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.282 | 0.011628 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.333 | 0.001076 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.337 | 0.003597 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.351 | 0.002793 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.374 | 0.002375 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.382 | 0.035714 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.397 | 0.002252 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.416 | 0.000905 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.419 | 0.007407 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.420 | 0.001006 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.435 | 0.034483 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.485 | 0.016667 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.507 | 0.008696 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.512 | 0.028571 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.52 | 0.012195 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.523 | 0.001563 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.70 | 0.000341 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.1.8 | 0.003584 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.111 | 0.001175 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.112 | 0.005181 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.14 | 0.017544 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.160.25 | 0.011111 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.170 | 0.00431 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.10 | 0.000878 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.11 | 0.001698 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.32 | 0.00135 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.44 | 0.000519 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.46 | 0.000918 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.48 | 0.003125 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.65 | 0.000665 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.80 | 0.001912 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.177.82 | 0.000477 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.214 | 0.003663 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.232 | 0.000537 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.237 | 0.004975 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.258.18 | 0.1 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.320 | 0.001245 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.36.16 | 0.001425 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.36.18 | 0.00042 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.362 | 0.001541 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.395 | 0.007042 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.396 | 0.000706 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.397 | 0.004854 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.399 | 0.001934 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.400 | 0.000429 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.404 | 0.001302 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.408 | 0.00369 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.420 | 0.010417 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.426 | 0.001009 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.428 | 0.00102 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.432 | 0.011236 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.469 | 0.00361 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.470 | 0.001404 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.509 | 0.000866 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.524 | 0.001406 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.533 | 0.009615 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.548 | 0.035714 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.549 | 0.007194 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.551 | 0.00129 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.558 | 0.004566 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.564 | 0.000426 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.589 | 0.007576 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.590 | 0.004545 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.595 | 0.000261 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.605 | 0.005952 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.619 | 0.000871 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.619.1 | 0.000641 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.620 | 0.000946 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.629 | 0.013333 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.636 | 0.006711 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.1.91 | 0.002075 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.3 | 0.000831 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.3.1 | 0.001658 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.30 | 0.014706 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.33 | 0.021277 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.41 | 0.008 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | B.6.6 | 0.000889 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | C.11 | 0.010638 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | C.23 | 0.005814 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | C.35 | 0.000774 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | C.37.1 | 0.002618 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | C.6 | 0.037037 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | L.3 | 0.003546 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | N.10 | 0.029412 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | N.5 | 0.001767 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | N.9 | 0.005952 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | P.6 | 0.003145 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | P.7 | 0.004367 |
S | 655 | H655Y | Cat | Tat | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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