CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = H1101Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1101H1101YnonsynCacTac771276940.99766624863-24865
S1101H1101YnonsynCaCTaT7712180.0023340224863-24865

Details of the mutation H1101Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1101H1101YCacTac76947712All0.001472
S1101H1101YCaCTaT187712All0.000003
S1101H1101YCacTac21062106AY.1070.981361
S1101H1101YCacTac752753AY.40.00117
S1101H1101YCaCTaT1753AY.40.000002
S1101H1101YCacTac617620P.30.984051
S1101H1101YCaCTaT3620P.30.004785
S1101H1101YCacTac615615B.1.1.70.000551
S1101H1101YCacTac534534AY.440.00325
S1101H1101YCacTac341341B.1.617.20.001284
S1101H1101YCacTac191191AY.430.000846
S1101H1101YCacTac147147B.1.617.10.018958
S1101H1101YCacTac137137AY.740.015844
S1101H1101YCacTac120120AY.1030.000745
S1101H1101YCacTac119119AY.1020.003155
S1101H1101YCacTac9696B.1.4270.004848
S1101H1101YCacTac8787B.1.2580.00579
S1101H1101YCacTac8585AY.400.081967
S1101H1101YCacTac8585B.1.20.000748
S1101H1101YCacTac7777AY.250.000463
S1101H1101YCacTac6868AY.4.30.057239
S1101H1101YCacTac6666AY.30.000656
S1101H1101YCacTac5465P.10.000851
S1101H1101YCaCTaT1165P.10.000173
S1101H1101YCacTac5757AY.100.030207
S1101H1101YCacTac5757AY.1200.002119
S1101H1101YCacTac4545AY.240.019397
S1101H1101YCacTac4545B.10.000412
S1101H1101YCacTac4242AY.330.002805
S1101H1101YCacTac4242AY.9.10.003516
S1101H1101YCacTac4141B.1.10.000744
S1101H1101YCacTac3939B.1.5260.000917
S1101H1101YCacTac3838B.1.1770.0005
S1101H1101YCacTac3737B.1.2430.002575
S1101H1101YCacTac3535AY.1180.002193
S1101H1101YCacTac3434AY.50.000702
S1101H1101YCacTac3232B.1.1.5190.001271
S1101H1101YCacTac3131AY.1110.005678
S1101H1101YCacTac2626AY.140.002288
S1101H1101YCacTac2626AY.390.000642
S1101H1101YCacTac2424AY.1190.000847
S1101H1101YCacTac2424B.1.4290.000565
S1101H1101YCacTac2020AY.200.000777
S1101H1101YCacTac2020P.1.140.000956
S1101H1101YCacTac1717B.1.177.620.020262
S1101H1101YCacTac1717B.1.177.770.012346
S1101H1101YCacTac1616AY.1210.002165
S1101H1101YCacTac1616AY.230.001116
S1101H1101YCacTac1616B.1.1.4231
S1101H1101YCacTac1616B.1.5650.012966
S1101H1101YCacTac1515B.1.1.270.084746
S1101H1101YCacTac1414AY.910.010226
S1101H1101YCacTac1313AY.4.20.000282
S1101H1101YCacTac1313AY.46.20.008259
S1101H1101YCacTac1212B.1.1600.000374
S1101H1101YCacTac1212B.1.6280.004228
S1101H1101YCacTac1111AY.1170.00093
S1101H1101YCacTac1111AY.470.000342
S1101H1101YCacTac1111B.1.2400.002371
S1101H1101YCacTac1010AY.7.20.005593
S1101H1101YCacTac1010Q.10.001263
S1101H1101YCacTac99AY.460.000937
S1101H1101YCacTac99AY.46.60.00065
S1101H1101YCacTac99B.1.6210.000797
S1101H1101YCacTac88AY.920.002298
S1101H1101YCacTac88B.1.1.700.002729
S1101H1101YCacTac88B.1.6090.003835
S1101H1101YCacTac88R.10.00072
S1101H1101YCacTac77AY.750.000392
S1101H1101YCacTac77AY.9.20.000257
S1101H1101YCacTac77P.50.09589
S1101H1101YCacTac66AY.1000.000276
S1101H1101YCacTac66AY.3.10.000512
S1101H1101YCacTac66AY.420.000241
S1101H1101YCacTac66AY.450.00073
S1101H1101YCacTac66AY.99.20.000553
S1101H1101YCacTac66B.1.177.40.001266
S1101H1101YCacTac66B.1.3510.000178
S1101H1101YCacTac66B.1.5760.00544
S1101H1101YCacTac55AY.290.000079
S1101H1101YCacTac55AY.360.000741
S1101H1101YCacTac55B.1.1.3060.002192
S1101H1101YCacTac55B.1.1.4340.001743
S1101H1101YCacTac55B.1.258.170.00052
S1101H1101YCacTac55B.1.4280.005102
S1101H1101YCacTac55C.370.00058
S1101H1101YCacTac55Q.40.002274
S1101H1101YCaCTaT340.166667
S1101H1101YCacTac140.055556
S1101H1101YCacTac44A.23.10.002817
S1101H1101YCacTac44AY.1060.00134
S1101H1101YCacTac44AY.5.30.00135
S1101H1101YCacTac44AY.5.40.001107
S1101H1101YCacTac44AY.540.000381
S1101H1101YCacTac44AY.840.00175
S1101H1101YCacTac44B.1.1.2650.012618
S1101H1101YCacTac44B.1.177.810.000757
S1101H1101YCacTac44B.1.3570.038095
S1101H1101YCacTac44B.1.6370.000292
S1101H1101YCacTac44P.1.170.000647
S1101H1101YCacTac33A.2.50.001497
S1101H1101YCacTac33AD.20.000657
S1101H1101YCacTac33AY.860.00249
S1101H1101YCacTac33AY.90.000203
S1101H1101YCacTac33AY.98.10.000145
S1101H1101YCacTac33AY.990.003148
S1101H1101YCacTac33B.1.1.1650.046154
S1101H1101YCacTac33B.1.1.2910.002227
S1101H1101YCacTac33B.1.1.3170.001235
S1101H1101YCacTac33B.1.1.630.001157
S1101H1101YCacTac33B.1.1790.011278
S1101H1101YCacTac33B.1.2210.000213
S1101H1101YCacTac33B.1.2340.000396
S1101H1101YCacTac33B.1.3110.000824
S1101H1101YCacTac33B.1.3490.002144
S1101H1101YCacTac33B.1.36.170.001482
S1101H1101YCacTac33B.1.36.290.001552
S1101H1101YCacTac33B.1.428.30.038462
S1101H1101YCacTac33B.1.5210.014925
S1101H1101YCacTac33B.1.5250.000339
S1101H1101YCacTac33B.1.5610.001191
S1101H1101YCacTac33Q.80.000495
S1101H1101YCacTac22A.210.00554
S1101H1101YCacTac22AY.1090.001479
S1101H1101YCacTac22AY.1100.000225
S1101H1101YCacTac22AY.1130.000285
S1101H1101YCacTac22AY.120.10.000642
S1101H1101YCacTac22AY.260.000057
S1101H1101YCacTac22AY.300.000791
S1101H1101YCacTac22AY.320.001065
S1101H1101YCacTac22AY.34.10.00102
S1101H1101YCacTac22AY.39.10.000079
S1101H1101YCacTac22AY.580.001815
S1101H1101YCacTac22AY.60.000082
S1101H1101YCacTac22AY.610.00021
S1101H1101YCacTac22AY.620.000871
S1101H1101YCacTac22AY.680.000547
S1101H1101YCacTac22AY.75.10.000361
S1101H1101YCacTac22AY.770.002255
S1101H1101YCacTac22AY.850.000854
S1101H1101YCacTac22AY.950.001522
S1101H1101YCacTac22AY.980.000158
S1101H1101YCacTac22B0.000256
S1101H1101YCacTac22B.1.1.250.001137
S1101H1101YCacTac22B.1.1.3260.003521
S1101H1101YCacTac22B.1.1.3720.001377
S1101H1101YCacTac22B.1.1.5130.024691
S1101H1101YCacTac22B.1.1260.002551
S1101H1101YCacTac22B.1.160.300.005952
S1101H1101YCacTac22B.1.177.330.003289
S1101H1101YCacTac22B.1.177.70.00033
S1101H1101YCacTac22B.1.177.860.000367
S1101H1101YCacTac22B.1.2140.007326
S1101H1101YCacTac22B.1.2410.001623
S1101H1101YCacTac22B.1.3360.004878
S1101H1101YCacTac22B.1.360.000292
S1101H1101YCacTac22B.1.36.220.002415
S1101H1101YCacTac22B.1.438.10.000215
S1101H1101YCacTac22B.1.4600.035714
S1101H1101YCacTac22B.1.5750.000607
S1101H1101YCacTac22B.1.5960.000174
S1101H1101YCacTac22B.6.60.001778
S1101H1101YCacTac22C.260.014706
S1101H1101YCacTac22D.20.00015
S1101H1101YCacTac22P.1.120.000968
S1101H1101YCacTac22Q.70.002222
S1101H1101YCacTac11A0.000387
S1101H1101YCacTac11AE.70.083333
S1101H1101YCacTac11AY.1040.001984
S1101H1101YCacTac11AY.1150.005208
S1101H1101YCacTac11AY.20.000356
S1101H1101YCacTac11AY.350.000233
S1101H1101YCacTac11AY.380.000499
S1101H1101YCacTac11AY.4.10.000737
S1101H1101YCacTac11AY.4.2.10.000149
S1101H1101YCacTac11AY.4.50.000107
S1101H1101YCacTac11AY.46.10.001027
S1101H1101YCacTac11AY.46.50.000198
S1101H1101YCacTac11AY.520.000814
S1101H1101YCacTac11AY.550.000917
S1101H1101YCacTac11AY.590.00053
S1101H1101YCacTac11AY.660.00107
S1101H1101YCacTac11AY.7.10.000113
S1101H1101YCacTac11AY.790.001211
S1101H1101YCacTac11AY.870.000833
S1101H1101YCacTac11AZ.20.000821
S1101H1101YCacTac11B.1.1.1410.002012
S1101H1101YCacTac11B.1.1.1520.04
S1101H1101YCacTac11B.1.1.1610.003534
S1101H1101YCacTac11B.1.1.1740.003378
S1101H1101YCacTac11B.1.1.2160.00089
S1101H1101YCacTac11B.1.1.2220.000204
S1101H1101YCacTac11B.1.1.2250.007194
S1101H1101YCacTac11B.1.1.2290.005747
S1101H1101YCacTac11B.1.1.2360.006897
S1101H1101YCacTac11B.1.1.260.005236
S1101H1101YCacTac11B.1.1.2770.000759
S1101H1101YCacTac11B.1.1.280.000311
S1101H1101YCacTac11B.1.1.3180.000302
S1101H1101YCacTac11B.1.1.330.000421
S1101H1101YCacTac11B.1.1.3540.004386
S1101H1101YCacTac11B.1.1.3690.000446
S1101H1101YCacTac11B.1.1.3970.002252
S1101H1101YCacTac11B.1.1.4160.000905
S1101H1101YCacTac11B.1.1.4450.037037
S1101H1101YCacTac11B.1.1.4660.008696
S1101H1101YCacTac11B.1.130.002375
S1101H1101YCacTac11B.1.1470.000756
S1101H1101YCacTac11B.1.160.90.007194
S1101H1101YCacTac11B.1.177.350.000691
S1101H1101YCacTac11B.1.177.430.001477
S1101H1101YCacTac11B.1.177.580.001332
S1101H1101YCacTac11B.1.177.820.000477
S1101H1101YCacTac11B.1.2230.002778
S1101H1101YCacTac11B.1.2360.002053
S1101H1101YCacTac11B.1.2980.002114
S1101H1101YCacTac11B.1.3200.001245
S1101H1101YCacTac11B.1.3290.000608
S1101H1101YCacTac11B.1.3320.003497
S1101H1101YCacTac11B.1.36.190.009259
S1101H1101YCacTac11B.1.3670.000792
S1101H1101YCacTac11B.1.3750.00082
S1101H1101YCacTac11B.1.3960.000706
S1101H1101YCacTac11B.1.4040.001302
S1101H1101YCacTac11B.1.4050.012346
S1101H1101YCacTac11B.1.4530.003236
S1101H1101YCacTac11B.1.4560.003268
S1101H1101YCacTac11B.1.4700.001404
S1101H1101YCacTac11B.1.5400.009709
S1101H1101YCacTac11B.1.5580.004566
S1101H1101YCacTac11B.1.5640.000426
S1101H1101YCacTac11B.1.5770.000687
S1101H1101YCacTac11B.1.5880.00091
S1101H1101YCacTac11B.1.5950.000261
S1101H1101YCacTac11B.1.6190.000871
S1101H1101YCacTac11B.1.621.10.000506
S1101H1101YCacTac11B.1.6230.000536
S1101H1101YCacTac11B.1.840.020833
S1101H1101YCacTac11B.40.002208
S1101H1101YCacTac11C.110.010638
S1101H1101YCacTac11C.280.04
S1101H1101YCacTac11N.50.001767
S1101H1101YCacTac11P.1.10.000318
S1101H1101YCacTac11P.1.100.000269
S1101H1101YCacTac11P.1.150.000232
S1101H1101YCacTac11P.1.70.000319
S1101H1101YCacTac11P.20.000187
S1101H1101YCacTac11Q.30.000145
S1101H1101YCacTac11W.10.008696
S1101H1101YCacTac11W.40.001351
S1101H1101YCacTac11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.