CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G842S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S842G842SnonsynGgtAgt113411330.99911824086-24088
S842G842SnonsynGgTAgC113410.00088183424086-24088

Details of the mutation G842S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S842G842SGgtAgt11331134All0.000217
S842G842SGgTAgC11134All0
S842G842SGgtAgt313313AY.980.024725
S842G842SGgtAgt298298B.1.617.20.001122
S842G842SGgtAgt169169AY.250.001017
S842G842SGgtAgt127127AH.30.48289
S842G842SGgtAgt5050AY.40.000078
S842G842SGgtAgt2424AY.420.000966
S842G842SGgtAgt1718B.1.1.70.000015
S842G842SGgTAgC118B.1.1.70.000001
S842G842SGgtAgt1818B.1.2580.001198
S842G842SGgtAgt1313A.2.40.043771
S842G842SGgtAgt1010AY.200.000389
S842G842SGgtAgt1010AY.430.000044
S842G842SGgtAgt77B.10.000064
S842G842SGgtAgt55AY.290.000079
S842G842SGgtAgt55AY.440.00003
S842G842SGgtAgt55B.1.10.000091
S842G842SGgtAgt44AY.1000.000184
S842G842SGgtAgt44AY.1030.000025
S842G842SGgtAgt44B.1.20.000035
S842G842SGgtAgt33B.1.2430.000209
S842G842SGgtAgt33R.10.00027
S842G842SGgtAgt22AY.1020.000053
S842G842SGgtAgt22AY.1180.000125
S842G842SGgtAgt22AY.4.20.000043
S842G842SGgtAgt22AY.450.000243
S842G842SGgtAgt22AY.460.000208
S842G842SGgtAgt22B.1.1.2140.000111
S842G842SGgtAgt22B.1.1.2410.004141
S842G842SGgtAgt22B.1.1.2940.002532
S842G842SGgtAgt22B.1.177.120.000303
S842G842SGgtAgt22B.1.6210.000177
S842G842SGgtAgt22P.10.000032
S842G842SGgtAgt11A.2.5.10.004808
S842G842SGgtAgt11AY.1080.001103
S842G842SGgtAgt11AY.1160.000287
S842G842SGgtAgt11AY.1190.000035
S842G842SGgtAgt11AY.1200.000037
S842G842SGgtAgt11AY.140.000088
S842G842SGgtAgt11AY.230.00007
S842G842SGgtAgt11AY.390.000025
S842G842SGgtAgt11B.1.1.3010.001179
S842G842SGgtAgt11B.1.1600.000031
S842G842SGgtAgt11B.1.177.800.001912
S842G842SGgtAgt11B.1.2210.000071
S842G842SGgtAgt11B.1.36.290.000517
S842G842SGgtAgt11B.1.3700.008
S842G842SGgtAgt11B.1.4270.00005
S842G842SGgtAgt11B.1.5250.000113
S842G842SGgtAgt11B.1.5260.000024
S842G842SGgtAgt11B.1.5510.00129
S842G842SGgtAgt11B.1.5750.000303
S842G842SGgtAgt11B.1.6310.003367
S842G842SGgtAgt11N.30.005814
S842G842SGgtAgt11P.1.100.000269

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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