CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G769R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S769G769RnonsynGgaAga4533650.8057423867-23869
S769G769RnonsynGgaCga453880.1942623867-23869

Details of the mutation G769R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S769G769RGgaAga365453All0.00007
S769G769RGgaCga88453All0.000017
S769G769RGgaAga107107B.1.6360.718121
S769G769RGgaCga6767C.350.051858
S769G769RGgaAga4547P.10.000709
S769G769RGgaCga247P.10.000032
S769G769RGgaAga4545B.1.4710.122951
S769G769RGgaAga1717B.10.000156
S769G769RGgaAga1414AY.1030.000087
S769G769RGgaAga1313B.1.1.70.000012
S769G769RGgaAga1313B.1.20.000114
S769G769RGgaAga1111P.1.120.005324
S769G769RGgaCga610D.20.00045
S769G769RGgaAga410D.20.0003
S769G769RGgaAga99B.1.1.3060.003946
S769G769RGgaAga68AY.40.000009
S769G769RGgaCga28AY.40.000003
S769G769RGgaAga88AY.4.20.000174
S769G769RGgaAga88B.1.1770.000105
S769G769RGgaAga66AY.260.00017
S769G769RGgaAga66B.1.5260.000141
S769G769RGgaAga66B.1.617.20.000023
S769G769RGgaAga55B.1.3510.000149
S769G769RGgaAga34AY.430.000013
S769G769RGgaCga14AY.430.000004
S769G769RGgaAga23AY.50.000041
S769G769RGgaCga13AY.50.000021
S769G769RGgaAga33AY.680.000821
S769G769RGgaCga33B.1.1.3720.002066
S769G769RGgaAga23P.1.140.000096
S769G769RGgaCga13P.1.140.000048
S769G769RGgaAga220.111111
S769G769RGgaAga22A.23.10.001408
S769G769RGgaAga22AY.440.000012
S769G769RGgaAga22B.1.5950.000522
S769G769RGgaAga11A0.000387
S769G769RGgaAga11AY.1010.00049
S769G769RGgaAga11AY.1020.000027
S769G769RGgaAga11AY.200.000039
S769G769RGgaAga11AY.3.10.000085
S769G769RGgaCga11AY.330.000067
S769G769RGgaAga11AY.390.000025
S769G769RGgaCga11AY.4.2.10.000149
S769G769RGgaAga11AY.470.000031
S769G769RGgaAga11AY.5.40.000277
S769G769RGgaCga11AY.620.000436
S769G769RGgaCga11AY.840.000437
S769G769RGgaAga11AY.9.20.000037
S769G769RGgaAga11B.1.1.1700.001247
S769G769RGgaAga11B.1.1.2140.000055
S769G769RGgaAga11B.1.1.2200.001859
S769G769RGgaCga11B.1.1.2860.002899
S769G769RGgaAga11B.1.1.3550.015385
S769G769RGgaAga11B.1.1.3780.007299
S769G769RGgaAga11B.1.1.5190.00004
S769G769RGgaAga11B.1.177.210.000076
S769G769RGgaAga11B.1.1950.005025
S769G769RGgaAga11B.1.3690.000285
S769G769RGgaAga11B.1.4270.00005
S769G769RGgaAga11B.1.5380.008065
S769G769RGgaAga11B.1.5960.000087
S769G769RGgaAga11B.1.6390.021739
S769G769RGgaAga11B.230.002924
S769G769RGgaAga11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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