CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 219 | G219G | syn | ggT | ggC | 3548 | 3495 | 0.985062 | 22217-22219 | |
S | 219 | G219G | syn | ggT | ggG | 3548 | 48 | 0.0135287 | 22217-22219 | |
S | 219 | G219G | syn | ggT | ggA | 3548 | 5 | 0.00140924 | 22217-22219 |
Details of the mutation G219G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 219 | G219G | ggT | ggC | 3495 | 3548 | All | 0.000668 |
S | 219 | G219G | ggT | ggG | 48 | 3548 | All | 0.000009 |
S | 219 | G219G | ggT | ggA | 5 | 3548 | All | 0.000001 |
S | 219 | G219G | ggT | ggC | 2274 | 2274 | B.1.466.2 | 0.889671 |
S | 219 | G219G | ggT | ggC | 448 | 448 | AU.3 | 0.945148 |
S | 219 | G219G | ggT | ggC | 399 | 399 | AU.2 | 0.966102 |
S | 219 | G219G | ggT | ggC | 62 | 62 | B.1.1.526 | 0.219858 |
S | 219 | G219G | ggT | ggC | 58 | 61 | B.1.1.7 | 0.000052 |
S | 219 | G219G | ggT | ggG | 3 | 61 | B.1.1.7 | 0.000003 |
S | 219 | G219G | ggT | ggC | 45 | 47 | B.1 | 0.000412 |
S | 219 | G219G | ggT | ggG | 2 | 47 | B.1 | 0.000018 |
S | 219 | G219G | ggT | ggC | 19 | 21 | AY.44 | 0.000116 |
S | 219 | G219G | ggT | ggG | 2 | 21 | AY.44 | 0.000012 |
S | 219 | G219G | ggT | ggG | 20 | 20 | B.1.177 | 0.000263 |
S | 219 | G219G | ggT | ggC | 11 | 13 | AY.25 | 0.000066 |
S | 219 | G219G | ggT | ggG | 2 | 13 | AY.25 | 0.000012 |
S | 219 | G219G | ggT | ggC | 13 | 13 | B.1.462 | 0.094203 |
S | 219 | G219G | ggT | ggC | 13 | 13 | B.1.474 | 0.024715 |
S | 219 | G219G | ggT | ggC | 12 | 12 | AY.103 | 0.000075 |
S | 219 | G219G | ggT | ggC | 8 | 11 | AY.4 | 0.000012 |
S | 219 | G219G | ggT | ggG | 3 | 11 | AY.4 | 0.000005 |
S | 219 | G219G | ggT | ggC | 10 | 10 | B.1.617.2 | 0.000038 |
S | 219 | G219G | ggT | ggC | 9 | 9 | AY.23 | 0.000628 |
S | 219 | G219G | ggT | ggC | 8 | 8 | AY.42 | 0.000322 |
S | 219 | G219G | ggT | ggC | 8 | 8 | B.1.160 | 0.00025 |
S | 219 | G219G | ggT | ggC | 5 | 7 | AY.43 | 0.000022 |
S | 219 | G219G | ggT | ggG | 2 | 7 | AY.43 | 0.000009 |
S | 219 | G219G | ggT | ggC | 7 | 7 | B.1.459 | 0.028571 |
S | 219 | G219G | ggT | ggC | 5 | 5 | AY.3 | 0.00005 |
S | 219 | G219G | ggT | ggC | 5 | 5 | B.1.469 | 0.018051 |
S | 219 | G219G | ggT | ggC | 3 | 4 | A | 0.001161 |
S | 219 | G219G | ggT | ggG | 1 | 4 | A | 0.000387 |
S | 219 | G219G | ggT | ggC | 4 | 4 | AY.39 | 0.000099 |
S | 219 | G219G | ggT | ggC | 4 | 4 | Q.3 | 0.00058 |
S | 219 | G219G | ggT | ggA | 2 | 3 | 0.111111 | |
S | 219 | G219G | ggT | ggG | 1 | 3 | 0.055556 | |
S | 219 | G219G | ggT | ggC | 3 | 3 | AY.46 | 0.000312 |
S | 219 | G219G | ggT | ggC | 3 | 3 | B.1.2 | 0.000026 |
S | 219 | G219G | ggT | ggC | 3 | 3 | B.1.36.29 | 0.001552 |
S | 219 | G219G | ggT | ggC | 3 | 3 | B.1.497 | 0.000944 |
S | 219 | G219G | ggT | ggC | 3 | 3 | B.1.596 | 0.000261 |
S | 219 | G219G | ggT | ggC | 3 | 3 | P.1 | 0.000047 |
S | 219 | G219G | ggT | ggC | 3 | 3 | P.3 | 0.004785 |
S | 219 | G219G | ggT | ggG | 2 | 2 | AY.20 | 0.000078 |
S | 219 | G219G | ggT | ggC | 2 | 2 | AY.26 | 0.000057 |
S | 219 | G219G | ggT | ggC | 2 | 2 | AY.32 | 0.001065 |
S | 219 | G219G | ggT | ggC | 1 | 2 | AY.69 | 0.000187 |
S | 219 | G219G | ggT | ggG | 1 | 2 | AY.69 | 0.000187 |
S | 219 | G219G | ggT | ggC | 2 | 2 | B.1.222 | 0.003384 |
S | 219 | G219G | ggT | ggC | 2 | 2 | B.1.375 | 0.001639 |
S | 219 | G219G | ggT | ggC | 2 | 2 | B.1.415.1 | 0.015152 |
S | 219 | G219G | ggT | ggC | 2 | 2 | B.1.427 | 0.000101 |
S | 219 | G219G | ggT | ggC | 2 | 2 | B.1.609 | 0.000959 |
S | 219 | G219G | ggT | ggG | 2 | 2 | D.2 | 0.00015 |
S | 219 | G219G | ggT | ggA | 1 | 1 | A.2 | 0.000662 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.102 | 0.000027 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.116 | 0.000287 |
S | 219 | G219G | ggT | ggG | 1 | 1 | AY.117 | 0.000085 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.118 | 0.000063 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.23.1 | 0.000417 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.24 | 0.000431 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.29 | 0.000016 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.37 | 0.000316 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.39.1 | 0.00004 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.46.3 | 0.000934 |
S | 219 | G219G | ggT | ggG | 1 | 1 | AY.59 | 0.00053 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.6 | 0.000041 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.65 | 0.000533 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.75.1 | 0.00018 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.84 | 0.000437 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.9.2 | 0.000037 |
S | 219 | G219G | ggT | ggC | 1 | 1 | AY.93 | 0.000273 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1 | 0.000018 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1.1 | 0.000327 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1.322 | 0.008772 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1.397 | 0.002252 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1.51 | 0.001718 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.1.519 | 0.00004 |
S | 219 | G219G | ggT | ggG | 1 | 1 | B.1.126 | 0.001276 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.128 | 0.000635 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.177.56 | 0.000668 |
S | 219 | G219G | ggT | ggA | 1 | 1 | B.1.177.7 | 0.000165 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.177.81 | 0.000189 |
S | 219 | G219G | ggT | ggG | 1 | 1 | B.1.258.7 | 0.001912 |
S | 219 | G219G | ggT | ggG | 1 | 1 | B.1.333 | 0.010526 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.351 | 0.00003 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.36 | 0.000146 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.460 | 0.017857 |
S | 219 | G219G | ggT | ggA | 1 | 1 | B.1.524 | 0.001406 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.526 | 0.000024 |
S | 219 | G219G | ggT | ggG | 1 | 1 | B.1.617.1 | 0.000129 |
S | 219 | G219G | ggT | ggC | 1 | 1 | B.1.631 | 0.003367 |
S | 219 | G219G | ggT | ggG | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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