CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G1219G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1219G1219GsynggTggC2441800.73770525217-25219
S1219G1219GsynggTggG244620.25409825217-25219
S1219G1219GsynggTggA24420.0081967225217-25219

Details of the mutation G1219G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1219G1219GggTggC180244All0.000034
S1219G1219GggTggG62244All0.000012
S1219G1219GggTggA2244All0
S1219G1219GggTggC94106B.1.1.70.000084
S1219G1219GggTggG11106B.1.1.70.00001
S1219G1219GggTggA1106B.1.1.70.000001
S1219G1219GggTggC2024B.1.20.000176
S1219G1219GggTggG424B.1.20.000035
S1219G1219GggTggG1213AY.40.000019
S1219G1219GggTggC113AY.40.000002
S1219G1219GggTggC79AY.430.000031
S1219G1219GggTggG29AY.430.000009
S1219G1219GggTggC79B.1.617.20.000026
S1219G1219GggTggG29B.1.617.20.000008
S1219G1219GggTggC66AY.1030.000037
S1219G1219GggTggC55AY.1200.000186
S1219G1219GggTggC55AY.250.00003
S1219G1219GggTggC44AY.4.20.000087
S1219G1219GggTggC34AY.440.000018
S1219G1219GggTggG14AY.440.000006
S1219G1219GggTggG34B.1.10.000054
S1219G1219GggTggC14B.1.10.000018
S1219G1219GggTggG23B.1.1770.000026
S1219G1219GggTggC13B.1.1770.000013
S1219G1219GggTggC33B.1.2340.000396
S1219G1219GggTggG33C.110.031915
S1219G1219GggTggG33D.20.000225
S1219G1219GggTggC22A.10.000564
S1219G1219GggTggC22AY.450.000243
S1219G1219GggTggG22B.10.000018
S1219G1219GggTggG22B.1.1.2940.002532
S1219G1219GggTggC22B.1.1.3980.006452
S1219G1219GggTggG22B.1.5820.000981
S1219G1219GggTggC12P.10.000016
S1219G1219GggTggG12P.10.000016
S1219G1219GggTggC110.055556
S1219G1219GggTggG11AY.1080.001103
S1219G1219GggTggC11AY.1130.000142
S1219G1219GggTggC11AY.1170.000085
S1219G1219GggTggC11AY.200.000039
S1219G1219GggTggG11AY.260.000028
S1219G1219GggTggG11AY.30.00001
S1219G1219GggTggG11AY.420.00004
S1219G1219GggTggC11AY.470.000031
S1219G1219GggTggG11AY.50.000021
S1219G1219GggTggC11AY.530.000288
S1219G1219GggTggC11AY.610.000105
S1219G1219GggTggC11AY.70.000196
S1219G1219GggTggC11B0.000128
S1219G1219GggTggC11B.1.1.2690.001353
S1219G1219GggTggG11B.1.1.330.000421
S1219G1219GggTggC11B.1.1.5190.00004
S1219G1219GggTggG11B.1.177.100.000878
S1219G1219GggTggC11B.1.177.200.001517
S1219G1219GggTggG11B.1.177.820.000477
S1219G1219GggTggG11B.1.2060.000816
S1219G1219GggTggC11B.1.3460.001311
S1219G1219GggTggG11B.1.3510.00003
S1219G1219GggTggA11B.1.6300.005236
S1219G1219GggTggC11B.310.003731
S1219G1219GggTggG11B.400.000364
S1219G1219GggTggG11P.1.10.000318
S1219G1219GggTggC11P.1.120.000484
S1219G1219GggTggC11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.