CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G1171G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1171G1171GsynggCggT145514290.98213125073-25075
S1171G1171GsynggCggA1455200.013745725073-25075
S1171G1171GsynggCggG145560.0041237125073-25075

Details of the mutation G1171G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1171G1171GggCggT14291455All0.000273
S1171G1171GggCggA201455All0.000004
S1171G1171GggCggG61455All0.000001
S1171G1171GggCggT244244B.1.1490.835616
S1171G1171GggCggT175176AY.40.000272
S1171G1171GggCggA1176AY.40.000002
S1171G1171GggCggT166166B.1.1770.002186
S1171G1171GggCggT139139AY.120.10.044623
S1171G1171GggCggT9293B.1.1.70.000082
S1171G1171GggCggG193B.1.1.70.000001
S1171G1171GggCggT8080AY.30.000796
S1171G1171GggCggT6666P.1.140.003155
S1171G1171GggCggT5050P.10.000788
S1171G1171GggCggT4749B.1.617.20.000177
S1171G1171GggCggA249B.1.617.20.000008
S1171G1171GggCggT3636AY.1030.000224
S1171G1171GggCggT3535AY.1100.003944
S1171G1171GggCggT3434P.1.70.010856
S1171G1171GggCggT2525B.1.1.2220.0051
S1171G1171GggCggT2124B.10.000192
S1171G1171GggCggA324B.10.000027
S1171G1171GggCggT2020AY.1190.000706
S1171G1171GggCggT1717B.1.1.5190.000675
S1171G1171GggCggT1717B.1.258.170.001768
S1171G1171GggCggT1414AY.430.000062
S1171G1171GggCggT1112AY.250.000066
S1171G1171GggCggA112AY.250.000006
S1171G1171GggCggT1111B.1.20.000097
S1171G1171GggCggT910AY.440.000055
S1171G1171GggCggG110AY.440.000006
S1171G1171GggCggT77B.1.4290.000165
S1171G1171GggCggT56AY.1020.000133
S1171G1171GggCggG16AY.1020.000027
S1171G1171GggCggT66B.1.10.000109
S1171G1171GggCggT55AY.200.000194
S1171G1171GggCggT55AY.46.60.000361
S1171G1171GggCggT55AY.540.000477
S1171G1171GggCggT55P.1.100.001347
S1171G1171GggCggT44AY.390.000099
S1171G1171GggCggT44AY.470.000124
S1171G1171GggCggA44B.1.1.3060.001754
S1171G1171GggCggT33AY.1170.000254
S1171G1171GggCggT33AY.1200.000112
S1171G1171GggCggG23AY.50.000041
S1171G1171GggCggT13AY.50.000021
S1171G1171GggCggT33AY.980.000237
S1171G1171GggCggT33B.1.466.20.001174
S1171G1171GggCggT33B.1.5260.000071
S1171G1171GggCggT22AY.1000.000092
S1171G1171GggCggT22AY.130.000322
S1171G1171GggCggA12AY.230.00007
S1171G1171GggCggG12AY.230.00007
S1171G1171GggCggT12AY.260.000028
S1171G1171GggCggA12AY.260.000028
S1171G1171GggCggT22AY.270.000129
S1171G1171GggCggT22AY.290.000032
S1171G1171GggCggT22AY.330.000134
S1171G1171GggCggT12AY.420.00004
S1171G1171GggCggA12AY.420.00004
S1171G1171GggCggT22AY.460.000208
S1171G1171GggCggA22B.1.1.2140.000111
S1171G1171GggCggT22B.1.1.280.000622
S1171G1171GggCggA22B.1.2340.000264
S1171G1171GggCggT22B.1.3510.000059
S1171G1171GggCggT22B.1.390.007812
S1171G1171GggCggT22P.1.170.000324
S1171G1171GggCggT22P.20.000373
S1171G1171GggCggT110.055556
S1171G1171GggCggT11AU.10.001266
S1171G1171GggCggT11AY.1090.00074
S1171G1171GggCggT11AY.1140.000231
S1171G1171GggCggT11AY.140.000088
S1171G1171GggCggT11AY.300.000396
S1171G1171GggCggT11AY.4.20.000022
S1171G1171GggCggT11AY.4.50.000107
S1171G1171GggCggT11AY.400.000964
S1171G1171GggCggT11AY.46.40.000165
S1171G1171GggCggT11AY.530.000288
S1171G1171GggCggT11AY.60.000041
S1171G1171GggCggT11AY.600.000938
S1171G1171GggCggT11AY.610.000105
S1171G1171GggCggT11AY.650.000533
S1171G1171GggCggT11AY.750.000056
S1171G1171GggCggT11AY.75.10.00018
S1171G1171GggCggT11AY.98.10.000048
S1171G1171GggCggT11B0.000128
S1171G1171GggCggT11B.1.1.1760.000439
S1171G1171GggCggT11B.1.1.330.000421
S1171G1171GggCggT11B.1.1.370.000193
S1171G1171GggCggT11B.1.1.5000.02
S1171G1171GggCggT11B.1.1.5240.020833
S1171G1171GggCggT11B.1.1.610.008772
S1171G1171GggCggT11B.1.1700.00431
S1171G1171GggCggT11B.1.2100.002132
S1171G1171GggCggA11B.1.2580.000067
S1171G1171GggCggT11B.1.3690.000285
S1171G1171GggCggT11B.1.4680.005714
S1171G1171GggCggT11B.1.5030.002488
S1171G1171GggCggA11B.1.5760.000907
S1171G1171GggCggT11B.1.6090.000479
S1171G1171GggCggT11B.1.6250.002353
S1171G1171GggCggT11B.1.6370.000073
S1171G1171GggCggT11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.