CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G1124del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1124G1124deldelGGT---2626124932-24934

Details of the mutation G1124del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1124G1124delGGT---2626All0.000005
S1124G1124delGGT---55B.1.1.70.000004
S1124G1124delGGT---33AY.1200.000112
S1124G1124delGGT---33AY.40.000005
S1124G1124delGGT---22AY.4.50.000215
S1124G1124delGGT---22AY.430.000009
S1124G1124delGGT---22P.10.000032
S1124G1124delGGT---11AY.1180.000063
S1124G1124delGGT---11AY.330.000067
S1124G1124delGGT---11AY.90.000068
S1124G1124delGGT---11B.1.177.70.000165
S1124G1124delGGT---11B.1.617.20.000004
S1124G1124delGGT---11B.1.6300.005236
S1124G1124delGGT---11C.370.000116
S1124G1124delGGT---11P.1.150.000232
S1124G1124delGGT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.