CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G1124G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1124G1124GsynggTggC2602570.98846224932-24934
S1124G1124GsynggTggG26020.0076923124932-24934
S1124G1124GsynggTggA26010.0038461524932-24934

Details of the mutation G1124G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1124G1124GggTggC257260All0.000049
S1124G1124GggTggG2260All0
S1124G1124GggTggA1260All0
S1124G1124GggTggC2727B.1.617.20.000102
S1124G1124GggTggC2626AY.39.10.00103
S1124G1124GggTggC1818AY.390.000445
S1124G1124GggTggC1717AY.1030.000106
S1124G1124GggTggC1515AY.610.001572
S1124G1124GggTggC1111B.1.10.0002
S1124G1124GggTggC1111B.1.1.70.00001
S1124G1124GggTggC88AY.950.006088
S1124G1124GggTggC77AY.40.000011
S1124G1124GggTggC77AY.430.000031
S1124G1124GggTggC67AY.440.000037
S1124G1124GggTggA17AY.440.000006
S1124G1124GggTggC77AY.75.10.001262
S1124G1124GggTggC66AY.1000.000276
S1124G1124GggTggC66AY.116.10.001869
S1124G1124GggTggC66AY.30.00006
S1124G1124GggTggC55AY.320.002662
S1124G1124GggTggC55B.1.1770.000066
S1124G1124GggTggC55B.1.20.000044
S1124G1124GggTggC44B.10.000037
S1124G1124GggTggC44B.1.5960.000349
S1124G1124GggTggG230.111111
S1124G1124GggTggC130.055556
S1124G1124GggTggC33AY.200.000117
S1124G1124GggTggC33AY.260.000085
S1124G1124GggTggC33AY.340.000291
S1124G1124GggTggC33AY.5.30.001012
S1124G1124GggTggC22AY.250.000012
S1124G1124GggTggC22AY.450.000243
S1124G1124GggTggC22AY.46.40.000329
S1124G1124GggTggC22B.1.3510.000059
S1124G1124GggTggC22B.1.4290.000047
S1124G1124GggTggC22C.370.000232
S1124G1124GggTggC22D.20.00015
S1124G1124GggTggC22P.1.150.000465
S1124G1124GggTggC11AY.1180.000063
S1124G1124GggTggC11AY.120.000316
S1124G1124GggTggC11AY.1210.000135
S1124G1124GggTggC11AY.230.00007
S1124G1124GggTggC11AY.4.20.000022
S1124G1124GggTggC11AY.4.2.10.000149
S1124G1124GggTggC11AY.420.00004
S1124G1124GggTggC11AY.46.10.001027
S1124G1124GggTggC11AY.470.000031
S1124G1124GggTggC11AY.480.000465
S1124G1124GggTggC11AY.50.000021
S1124G1124GggTggC11AY.570.000656
S1124G1124GggTggC11AY.750.000056
S1124G1124GggTggC11AY.820.001357
S1124G1124GggTggC11AY.98.10.000048
S1124G1124GggTggC11B.1.1.2140.000055
S1124G1124GggTggC11B.1.1.250.000569
S1124G1124GggTggC11B.1.1.330.000421
S1124G1124GggTggC11B.1.1.4330.001425
S1124G1124GggTggC11B.1.177.210.000076
S1124G1124GggTggC11B.1.177.860.000183
S1124G1124GggTggC11B.1.3110.000275
S1124G1124GggTggC11B.1.3240.001605
S1124G1124GggTggC11B.1.3260.007576
S1124G1124GggTggC11B.1.360.000146
S1124G1124GggTggC11B.1.36.170.000494
S1124G1124GggTggC11B.1.6300.005236

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.