CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = G1124A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1124G1124AnonsyngGtgCt5151124932-24934

Details of the mutation G1124A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1124G1124AgGtgCt5151All0.00001
S1124G1124AgGtgCt99AY.200.00035
S1124G1124AgGtgCt66B.1.617.20.000023
S1124G1124AgGtgCt55AY.40.000008
S1124G1124AgGtgCt55AY.440.00003
S1124G1124AgGtgCt44B.1.1.70.000004
S1124G1124AgGtgCt33AY.430.000013
S1124G1124AgGtgCt33B.10.000027
S1124G1124AgGtgCt22AY.250.000012
S1124G1124AgGtgCt22AY.39.10.000079
S1124G1124AgGtgCt11AY.1000.000046
S1124G1124AgGtgCt11AY.1130.000142
S1124G1124AgGtgCt11AY.390.000025
S1124G1124AgGtgCt11AY.880.000884
S1124G1124AgGtgCt11B.1.10.000018
S1124G1124AgGtgCt11B.1.1.2140.000055
S1124G1124AgGtgCt11B.1.1.3170.000412
S1124G1124AgGtgCt11B.1.20.000009
S1124G1124AgGtgCt11B.1.2580.000067
S1124G1124AgGtgCt11B.1.5820.000491
S1124G1124AgGtgCt11C.350.000774
S1124G1124AgGtgCt11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.