CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = F55L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S55F55LnonsynTtcCtc69410.59420321725-21727
S55F55LnonsynttCttA69200.28985521725-21727
S55F55LnonsynttCttG6960.086956521725-21727
S55F55LnonsynTtCCtA6910.014492821725-21727
S55F55LnonsynTtCCtT6910.014492821725-21727

Details of the mutation F55L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S55F55LTtcCtc4169All0.000008
S55F55LttCttA2069All0.000004
S55F55LttCttG669All0.000001
S55F55LTtCCtA169All0
S55F55LTtCCtT169All0
S55F55LttCttA714B.10.000064
S55F55LTtcCtc514B.10.000046
S55F55LTtCCtT114B.10.000009
S55F55LTtCCtA114B.10.000009
S55F55LTtcCtc77AY.40.000011
S55F55LTtcCtc36B.1.1.70.000003
S55F55LttCttA26B.1.1.70.000002
S55F55LttCttG16B.1.1.70.000001
S55F55LTtcCtc44AY.430.000018
S55F55LttCttA24B.1.617.20.000008
S55F55LTtcCtc24B.1.617.20.000008
S55F55LttCttG220.111111
S55F55LTtcCtc22AY.230.000139
S55F55LttCttA22AY.440.000012
S55F55LTtcCtc22AY.60.000082
S55F55LttCttA12B.1.20.000009
S55F55LTtcCtc12B.1.20.000009
S55F55LTtcCtc11AY.1030.000006
S55F55LTtcCtc11AY.1110.000183
S55F55LTtcCtc11AY.1140.000231
S55F55LTtcCtc11AY.1180.000063
S55F55LTtcCtc11AY.120.2.10.000498
S55F55LttCttA11AY.140.000088
S55F55LttCttA11AY.250.000006
S55F55LttCttA11AY.260.000028
S55F55LTtcCtc11AY.330.000067
S55F55LttCttA11AY.39.20.001541
S55F55LTtcCtc11AY.460.000104
S55F55LTtcCtc11AY.46.60.000072
S55F55LTtcCtc11AY.470.000031
S55F55LTtcCtc11AY.9.10.000084
S55F55LTtcCtc11AY.9.20.000037
S55F55LttCttG11AY.960.002075
S55F55LttCttG11B.1.10.000018
S55F55LttCttG11B.1.1770.000013
S55F55LTtcCtc11B.1.2430.00007
S55F55LTtcCtc11B.1.2520.006623
S55F55LttCttA11B.1.3510.00003
S55F55LTtcCtc11B.1.36.270.000763
S55F55LTtcCtc11B.1.4270.00005
S55F55LttCttA11K.10.02381