CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 543 | F543F | syn | ttC | ttT | 16949 | 16949 | 1 | 23189-23191 |
Details of the mutation F543F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 543 | F543F | ttC | ttT | 16949 | 16949 | All | 0.003242 |
S | 543 | F543F | ttC | ttT | 6311 | 6311 | B.1.1.7 | 0.00565 |
S | 543 | F543F | ttC | ttT | 1287 | 1287 | B.1.427 | 0.06499 |
S | 543 | F543F | ttC | ttT | 858 | 858 | B.1.2 | 0.007555 |
S | 543 | F543F | ttC | ttT | 627 | 627 | B.1.1.214 | 0.034772 |
S | 543 | F543F | ttC | ttT | 556 | 556 | AY.4 | 0.000865 |
S | 543 | F543F | ttC | ttT | 547 | 547 | AY.43 | 0.002423 |
S | 543 | F543F | ttC | ttT | 465 | 465 | B.1.617.2 | 0.001751 |
S | 543 | F543F | ttC | ttT | 404 | 404 | B.1 | 0.0037 |
S | 543 | F543F | ttC | ttT | 392 | 392 | AY.44 | 0.002386 |
S | 543 | F543F | ttC | ttT | 374 | 374 | AY.25 | 0.00225 |
S | 543 | F543F | ttC | ttT | 306 | 306 | AY.103 | 0.0019 |
S | 543 | F543F | ttC | ttT | 291 | 291 | B.1.1.186 | 1 |
S | 543 | F543F | ttC | ttT | 231 | 231 | B.1.258.4 | 0.796552 |
S | 543 | F543F | ttC | ttT | 187 | 187 | B.1.429 | 0.0044 |
S | 543 | F543F | ttC | ttT | 173 | 173 | B.1.1.519 | 0.00687 |
S | 543 | F543F | ttC | ttT | 169 | 169 | B.1.160 | 0.005271 |
S | 543 | F543F | ttC | ttT | 164 | 164 | P.1 | 0.002584 |
S | 543 | F543F | ttC | ttT | 161 | 161 | B.1.1 | 0.002921 |
S | 543 | F543F | ttC | ttT | 152 | 152 | B.1.177 | 0.002001 |
S | 543 | F543F | ttC | ttT | 152 | 152 | B.1.606 | 0.915663 |
S | 543 | F543F | ttC | ttT | 144 | 144 | AY.3 | 0.001432 |
S | 543 | F543F | ttC | ttT | 135 | 135 | B.1.325 | 0.931034 |
S | 543 | F543F | ttC | ttT | 114 | 114 | B.1.258 | 0.007586 |
S | 543 | F543F | ttC | ttT | 83 | 83 | Q.8 | 0.013687 |
S | 543 | F543F | ttC | ttT | 82 | 82 | B.1.351 | 0.002438 |
S | 543 | F543F | ttC | ttT | 79 | 79 | AY.5.4 | 0.021859 |
S | 543 | F543F | ttC | ttT | 73 | 73 | B.1.525 | 0.008261 |
S | 543 | F543F | ttC | ttT | 72 | 72 | AY.47 | 0.00224 |
S | 543 | F543F | ttC | ttT | 68 | 68 | B.1.243.2 | 0.985507 |
S | 543 | F543F | ttC | ttT | 67 | 67 | AY.102 | 0.001776 |
S | 543 | F543F | ttC | ttT | 65 | 65 | B.1.596 | 0.005664 |
S | 543 | F543F | ttC | ttT | 63 | 63 | AY.100 | 0.002898 |
S | 543 | F543F | ttC | ttT | 56 | 56 | AY.61 | 0.005868 |
S | 543 | F543F | ttC | ttT | 48 | 48 | AY.42 | 0.001931 |
S | 543 | F543F | ttC | ttT | 47 | 47 | B.1.243 | 0.00327 |
S | 543 | F543F | ttC | ttT | 44 | 44 | AY.9 | 0.002974 |
S | 543 | F543F | ttC | ttT | 43 | 43 | B.1.621 | 0.003806 |
S | 543 | F543F | ttC | ttT | 40 | 40 | AY.4.1 | 0.029499 |
S | 543 | F543F | ttC | ttT | 40 | 40 | B.1.36 | 0.005836 |
S | 543 | F543F | ttC | ttT | 40 | 40 | B.1.572 | 1 |
S | 543 | F543F | ttC | ttT | 39 | 39 | AY.20 | 0.001516 |
S | 543 | F543F | ttC | ttT | 39 | 39 | AY.26 | 0.001104 |
S | 543 | F543F | ttC | ttT | 39 | 39 | AY.34 | 0.003782 |
S | 543 | F543F | ttC | ttT | 38 | 38 | AY.39 | 0.000939 |
S | 543 | F543F | ttC | ttT | 38 | 38 | B.1.564 | 0.016184 |
S | 543 | F543F | ttC | ttT | 37 | 37 | AY.121 | 0.005007 |
S | 543 | F543F | ttC | ttT | 37 | 37 | AY.4.2 | 0.000802 |
S | 543 | F543F | ttC | ttT | 37 | 37 | AY.5 | 0.000764 |
S | 543 | F543F | ttC | ttT | 32 | 32 | B.1.1.311 | 0.011461 |
S | 543 | F543F | ttC | ttT | 30 | 30 | B.1.1.1 | 0.009801 |
S | 543 | F543F | ttC | ttT | 29 | 29 | AY.119 | 0.001024 |
S | 543 | F543F | ttC | ttT | 29 | 29 | B.1.356 | 0.050086 |
S | 543 | F543F | ttC | ttT | 28 | 28 | AY.29 | 0.000442 |
S | 543 | F543F | ttC | ttT | 27 | 27 | B.1.526 | 0.000635 |
S | 543 | F543F | ttC | ttT | 27 | 27 | C.37 | 0.003134 |
S | 543 | F543F | ttC | ttT | 26 | 26 | D.2 | 0.001951 |
S | 543 | F543F | ttC | ttT | 25 | 25 | Q.1 | 0.003158 |
S | 543 | F543F | ttC | ttT | 24 | 24 | AY.3.1 | 0.002046 |
S | 543 | F543F | ttC | ttT | 22 | 22 | AY.98.1 | 0.001065 |
S | 543 | F543F | ttC | ttT | 21 | 21 | AY.6 | 0.000864 |
S | 543 | F543F | ttC | ttT | 21 | 21 | B.1.311 | 0.005766 |
S | 543 | F543F | ttC | ttT | 20 | 20 | AY.23 | 0.001395 |
S | 543 | F543F | ttC | ttT | 20 | 20 | AY.36 | 0.002964 |
S | 543 | F543F | ttC | ttT | 20 | 20 | B.1.1.203 | 0.338983 |
S | 543 | F543F | ttC | ttT | 19 | 19 | B.1.1.277 | 0.014416 |
S | 543 | F543F | ttC | ttT | 19 | 19 | B.1.637 | 0.001388 |
S | 543 | F543F | ttC | ttT | 18 | 18 | AY.10 | 0.009539 |
S | 543 | F543F | ttC | ttT | 17 | 17 | B.1.1.420 | 0.017103 |
S | 543 | F543F | ttC | ttT | 17 | 17 | B.1.36.8 | 0.017 |
S | 543 | F543F | ttC | ttT | 16 | 16 | B.1.1.39 | 0.008155 |
S | 543 | F543F | ttC | ttT | 15 | 15 | B.1.1.33 | 0.006313 |
S | 543 | F543F | ttC | ttT | 14 | 14 | B.1.588 | 0.012739 |
S | 543 | F543F | ttC | ttT | 14 | 14 | B.1.599 | 0.051095 |
S | 543 | F543F | ttC | ttT | 13 | 13 | AY.45 | 0.001582 |
S | 543 | F543F | ttC | ttT | 12 | 12 | AY.120 | 0.000446 |
S | 543 | F543F | ttC | ttT | 12 | 12 | B | 0.001534 |
S | 543 | F543F | ttC | ttT | 12 | 12 | B.1.221 | 0.000852 |
S | 543 | F543F | ttC | ttT | 12 | 12 | B.1.240 | 0.002587 |
S | 543 | F543F | ttC | ttT | 11 | 11 | B.1.628 | 0.003876 |
S | 543 | F543F | ttC | ttT | 11 | 11 | P.1.14 | 0.000526 |
S | 543 | F543F | ttC | ttT | 10 | 10 | AY.118 | 0.000626 |
S | 543 | F543F | ttC | ttT | 10 | 10 | B.1.438.1 | 0.001073 |
S | 543 | F543F | ttC | ttT | 10 | 10 | B.1.565 | 0.008104 |
S | 543 | F543F | ttC | ttT | 9 | 9 | AY.74 | 0.001041 |
S | 543 | F543F | ttC | ttT | 9 | 9 | B.1.1.216 | 0.008014 |
S | 543 | F543F | ttC | ttT | 9 | 9 | B.1.1.70 | 0.00307 |
S | 543 | F543F | ttC | ttT | 9 | 9 | B.1.540 | 0.087379 |
S | 543 | F543F | ttC | ttT | 9 | 9 | B.1.582 | 0.004416 |
S | 543 | F543F | ttC | ttT | 9 | 9 | P.2 | 0.00168 |
S | 543 | F543F | ttC | ttT | 8 | 8 | AY.113 | 0.001139 |
S | 543 | F543F | ttC | ttT | 8 | 8 | AY.33 | 0.000534 |
S | 543 | F543F | ttC | ttT | 8 | 8 | AY.65 | 0.004264 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.1.222 | 0.001632 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.1.63 | 0.003086 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.160.26 | 0.01937 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.177.7 | 0.001319 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.177.81 | 0.001515 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.234 | 0.001056 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.36.17 | 0.003953 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.36.31 | 0.014011 |
S | 543 | F543F | ttC | ttT | 8 | 8 | B.1.466.2 | 0.00313 |
S | 543 | F543F | ttC | ttT | 7 | 7 | AY.4.3 | 0.005892 |
S | 543 | F543F | ttC | ttT | 7 | 7 | AY.7.2 | 0.003915 |
S | 543 | F543F | ttC | ttT | 7 | 7 | B.1.1.318 | 0.002112 |
S | 543 | F543F | ttC | ttT | 7 | 7 | B.1.324 | 0.011236 |
S | 543 | F543F | ttC | ttT | 7 | 7 | B.1.36.19 | 0.064815 |
S | 543 | F543F | ttC | ttT | 7 | 7 | B.1.369 | 0.001997 |
S | 543 | F543F | ttC | ttT | 7 | 7 | B.1.409 | 0.005469 |
S | 543 | F543F | ttC | ttT | 6 | 6 | A.1 | 0.001691 |
S | 543 | F543F | ttC | ttT | 6 | 6 | A.2.5 | 0.002994 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AB.1 | 0.04918 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.111 | 0.001099 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.116 | 0.001721 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.13 | 0.000966 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.16.1 | 0.00282 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.39.1 | 0.000238 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.57 | 0.003937 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.69 | 0.00112 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.92 | 0.001724 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.94 | 0.002656 |
S | 543 | F543F | ttC | ttT | 6 | 6 | AY.98 | 0.000474 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.1.297 | 0.013423 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.1.317 | 0.00247 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.131 | 0.052632 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.177.60 | 0.001311 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.258.14 | 0.005882 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.36.29 | 0.003104 |
S | 543 | F543F | ttC | ttT | 6 | 6 | B.1.36.36 | 0.003612 |
S | 543 | F543F | ttC | ttT | 5 | 5 | AU.1 | 0.006329 |
S | 543 | F543F | ttC | ttT | 5 | 5 | AY.12 | 0.00158 |
S | 543 | F543F | ttC | ttT | 5 | 5 | AY.4.2.1 | 0.000745 |
S | 543 | F543F | ttC | ttT | 5 | 5 | AY.46.4 | 0.000823 |
S | 543 | F543F | ttC | ttT | 5 | 5 | AY.79 | 0.006053 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.1.306 | 0.002192 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.1.416 | 0.004525 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.177.87 | 0.003639 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.416 | 0.006345 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.499 | 0.005252 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.575 | 0.001517 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.609 | 0.002397 |
S | 543 | F543F | ttC | ttT | 5 | 5 | B.1.617.1 | 0.000645 |
S | 543 | F543F | ttC | ttT | 4 | 4 | A.2.5.2 | 0.006289 |
S | 543 | F543F | ttC | ttT | 4 | 4 | A.23.1 | 0.002817 |
S | 543 | F543F | ttC | ttT | 4 | 4 | AE.8 | 0.001956 |
S | 543 | F543F | ttC | ttT | 4 | 4 | AY.11 | 0.005355 |
S | 543 | F543F | ttC | ttT | 4 | 4 | AY.24 | 0.001724 |
S | 543 | F543F | ttC | ttT | 4 | 4 | AY.54 | 0.000381 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.1.189 | 0.006051 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.1.273 | 0.027027 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.177.56 | 0.00267 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.177.73 | 0.002265 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.232 | 0.002149 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.258.17 | 0.000416 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.367 | 0.00317 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.428 | 0.004082 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.509 | 0.003463 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.561 | 0.001588 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.595 | 0.001044 |
S | 543 | F543F | ttC | ttT | 4 | 4 | B.1.597 | 0.018519 |
S | 543 | F543F | ttC | ttT | 4 | 4 | C.18 | 0.010363 |
S | 543 | F543F | ttC | ttT | 4 | 4 | C.36 | 0.003643 |
S | 543 | F543F | ttC | ttT | 4 | 4 | N.5 | 0.007067 |
S | 543 | F543F | ttC | ttT | 4 | 4 | P.1.15 | 0.000929 |
S | 543 | F543F | ttC | ttT | 4 | 4 | Q.3 | 0.00058 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AD.2 | 0.000657 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.1 | 0.001187 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.106 | 0.001005 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.120.1 | 0.000963 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.14 | 0.000264 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.22 | 0.006276 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.27 | 0.000194 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.30 | 0.001187 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.32 | 0.001597 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.4.5 | 0.000322 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.46.5 | 0.000595 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.5.3 | 0.001012 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.75 | 0.000168 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.83 | 0.005172 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.9.1 | 0.000251 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.93 | 0.000819 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.99 | 0.003148 |
S | 543 | F543F | ttC | ttT | 3 | 3 | AY.99.2 | 0.000276 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.1.176 | 0.001318 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.1.220 | 0.005576 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.1.263 | 0.004673 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.1.377 | 0.004144 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.139 | 0.002199 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.177.82 | 0.001432 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.351.2 | 0.000908 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.36.16 | 0.004274 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.36.18 | 0.001261 |
S | 543 | F543F | ttC | ttT | 3 | 3 | B.1.470 | 0.004213 |
S | 543 | F543F | ttC | ttT | 3 | 3 | P.1.1 | 0.000953 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.101 | 0.000981 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.107 | 0.000932 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.109 | 0.001479 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.110 | 0.000225 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.114 | 0.000462 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.116.1 | 0.000623 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.16 | 0.000759 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.2 | 0.000712 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.34.1 | 0.00102 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.38 | 0.000999 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.4.4 | 0.000818 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.46.6 | 0.000144 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.59 | 0.001059 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.60 | 0.001876 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.68 | 0.000547 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.71 | 0.00095 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.75.1 | 0.000361 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.9.2 | 0.000073 |
S | 543 | F543F | ttC | ttT | 2 | 2 | AY.90 | 0.001369 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.170 | 0.002494 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.275 | 0.022472 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.302 | 0.004149 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.304 | 0.005618 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.312 | 0.003824 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.348 | 0.001592 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.369 | 0.000892 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.397 | 0.004505 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.1.521 | 0.010695 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.104 | 0.00738 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.110.3 | 0.001437 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.120 | 0.015385 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.128 | 0.001271 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.177.16 | 0.001329 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.177.46 | 0.001837 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.177.58 | 0.002663 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.177.6 | 0.001953 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.351.3 | 0.001753 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.400 | 0.000858 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.1.401 | 0.016393 |
S | 543 | F543F | ttC | ttT | 2 | 2 | B.12 | 0.012821 |
S | 543 | F543F | ttC | ttT | 2 | 2 | C.35 | 0.001548 |
S | 543 | F543F | ttC | ttT | 2 | 2 | P.1.12 | 0.000968 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AL.1 | 0.012987 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.108 | 0.001103 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.19 | 0.00114 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.31 | 0.018519 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.35 | 0.000233 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.46 | 0.000104 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.52 | 0.000814 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.53 | 0.000288 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.62 | 0.000436 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.78 | 0.001541 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.84 | 0.000437 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.85 | 0.000427 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.86 | 0.00083 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.88 | 0.000884 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.95 | 0.000761 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AY.97 | 0.001701 |
S | 543 | F543F | ttC | ttT | 1 | 1 | AZ.2 | 0.000821 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.111 | 0.014706 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.141 | 0.002012 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.158 | 0.012195 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.161 | 0.003534 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.198 | 0.001468 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.236 | 0.006897 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.241 | 0.00207 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.265 | 0.003155 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.300 | 0.010753 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.326 | 0.001761 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.335 | 0.012987 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.367 | 0.055556 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.371 | 0.010417 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.385 | 0.004464 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.402 | 0.011111 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.404 | 0.015873 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.433 | 0.001425 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.487 | 0.005587 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.512 | 0.028571 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.515 | 0.02 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.517 | 0.006803 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.518 | 0.006329 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.526 | 0.003546 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.1.61 | 0.008772 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.158 | 0.02381 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.160.24 | 0.004425 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.10 | 0.000878 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.35 | 0.000691 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.42 | 0.000894 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.63 | 0.002703 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.177.9 | 0.001332 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.189 | 0.004292 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.210 | 0.002132 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.218 | 0.005155 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.22 | 0.001318 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.220 | 0.01087 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.236 | 0.002053 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.239 | 0.001221 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.265 | 0.001271 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.329 | 0.000608 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.333 | 0.010526 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.350 | 0.002933 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.36.1 | 0.00114 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.36.12 | 0.009615 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.36.7 | 0.004 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.375 | 0.00082 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.389 | 0.001002 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.39 | 0.003906 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.396 | 0.000706 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.402 | 0.009804 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.408 | 0.00369 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.417 | 0.028571 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.424 | 0.008065 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.433 | 0.003195 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.438 | 0.006536 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.446 | 0.02 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.453 | 0.003236 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.505 | 0.004386 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.516 | 0.001957 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.524 | 0.001406 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.527 | 0.003704 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.533 | 0.009615 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.558 | 0.004566 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.568 | 0.001111 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.577 | 0.000687 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.580 | 0.004065 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.596.1 | 0.009346 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.600 | 0.005848 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.612 | 0.002653 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.616 | 0.02439 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.623 | 0.000536 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.627 | 0.00202 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.1.91 | 0.002075 |
S | 543 | F543F | ttC | ttT | 1 | 1 | B.4 | 0.002208 |
S | 543 | F543F | ttC | ttT | 1 | 1 | C.1.2 | 0.004255 |
S | 543 | F543F | ttC | ttT | 1 | 1 | C.12 | 0.007194 |
S | 543 | F543F | ttC | ttT | 1 | 1 | C.36.3.1 | 0.002717 |
S | 543 | F543F | ttC | ttT | 1 | 1 | C.37.1 | 0.002618 |
S | 543 | F543F | ttC | ttT | 1 | 1 | P.1.10 | 0.000269 |
S | 543 | F543F | ttC | ttT | 1 | 1 | P.1.8 | 0.004785 |
S | 543 | F543F | ttC | ttT | 1 | 1 | Q.4 | 0.000455 |
S | 543 | F543F | ttC | ttT | 1 | 1 | S.1 | 0.00495 |
S | 543 | F543F | ttC | ttT | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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