CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = F543F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S543F543FsynttCttT1694916949123189-23191

Details of the mutation F543F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S543F543FttCttT1694916949All0.003242
S543F543FttCttT63116311B.1.1.70.00565
S543F543FttCttT12871287B.1.4270.06499
S543F543FttCttT858858B.1.20.007555
S543F543FttCttT627627B.1.1.2140.034772
S543F543FttCttT556556AY.40.000865
S543F543FttCttT547547AY.430.002423
S543F543FttCttT465465B.1.617.20.001751
S543F543FttCttT404404B.10.0037
S543F543FttCttT392392AY.440.002386
S543F543FttCttT374374AY.250.00225
S543F543FttCttT306306AY.1030.0019
S543F543FttCttT291291B.1.1.1861
S543F543FttCttT231231B.1.258.40.796552
S543F543FttCttT187187B.1.4290.0044
S543F543FttCttT173173B.1.1.5190.00687
S543F543FttCttT169169B.1.1600.005271
S543F543FttCttT164164P.10.002584
S543F543FttCttT161161B.1.10.002921
S543F543FttCttT152152B.1.1770.002001
S543F543FttCttT152152B.1.6060.915663
S543F543FttCttT144144AY.30.001432
S543F543FttCttT135135B.1.3250.931034
S543F543FttCttT114114B.1.2580.007586
S543F543FttCttT8383Q.80.013687
S543F543FttCttT8282B.1.3510.002438
S543F543FttCttT7979AY.5.40.021859
S543F543FttCttT7373B.1.5250.008261
S543F543FttCttT7272AY.470.00224
S543F543FttCttT6868B.1.243.20.985507
S543F543FttCttT6767AY.1020.001776
S543F543FttCttT6565B.1.5960.005664
S543F543FttCttT6363AY.1000.002898
S543F543FttCttT5656AY.610.005868
S543F543FttCttT4848AY.420.001931
S543F543FttCttT4747B.1.2430.00327
S543F543FttCttT4444AY.90.002974
S543F543FttCttT4343B.1.6210.003806
S543F543FttCttT4040AY.4.10.029499
S543F543FttCttT4040B.1.360.005836
S543F543FttCttT4040B.1.5721
S543F543FttCttT3939AY.200.001516
S543F543FttCttT3939AY.260.001104
S543F543FttCttT3939AY.340.003782
S543F543FttCttT3838AY.390.000939
S543F543FttCttT3838B.1.5640.016184
S543F543FttCttT3737AY.1210.005007
S543F543FttCttT3737AY.4.20.000802
S543F543FttCttT3737AY.50.000764
S543F543FttCttT3232B.1.1.3110.011461
S543F543FttCttT3030B.1.1.10.009801
S543F543FttCttT2929AY.1190.001024
S543F543FttCttT2929B.1.3560.050086
S543F543FttCttT2828AY.290.000442
S543F543FttCttT2727B.1.5260.000635
S543F543FttCttT2727C.370.003134
S543F543FttCttT2626D.20.001951
S543F543FttCttT2525Q.10.003158
S543F543FttCttT2424AY.3.10.002046
S543F543FttCttT2222AY.98.10.001065
S543F543FttCttT2121AY.60.000864
S543F543FttCttT2121B.1.3110.005766
S543F543FttCttT2020AY.230.001395
S543F543FttCttT2020AY.360.002964
S543F543FttCttT2020B.1.1.2030.338983
S543F543FttCttT1919B.1.1.2770.014416
S543F543FttCttT1919B.1.6370.001388
S543F543FttCttT1818AY.100.009539
S543F543FttCttT1717B.1.1.4200.017103
S543F543FttCttT1717B.1.36.80.017
S543F543FttCttT1616B.1.1.390.008155
S543F543FttCttT1515B.1.1.330.006313
S543F543FttCttT1414B.1.5880.012739
S543F543FttCttT1414B.1.5990.051095
S543F543FttCttT1313AY.450.001582
S543F543FttCttT1212AY.1200.000446
S543F543FttCttT1212B0.001534
S543F543FttCttT1212B.1.2210.000852
S543F543FttCttT1212B.1.2400.002587
S543F543FttCttT1111B.1.6280.003876
S543F543FttCttT1111P.1.140.000526
S543F543FttCttT1010AY.1180.000626
S543F543FttCttT1010B.1.438.10.001073
S543F543FttCttT1010B.1.5650.008104
S543F543FttCttT99AY.740.001041
S543F543FttCttT99B.1.1.2160.008014
S543F543FttCttT99B.1.1.700.00307
S543F543FttCttT99B.1.5400.087379
S543F543FttCttT99B.1.5820.004416
S543F543FttCttT99P.20.00168
S543F543FttCttT88AY.1130.001139
S543F543FttCttT88AY.330.000534
S543F543FttCttT88AY.650.004264
S543F543FttCttT88B.1.1.2220.001632
S543F543FttCttT88B.1.1.630.003086
S543F543FttCttT88B.1.160.260.01937
S543F543FttCttT88B.1.177.70.001319
S543F543FttCttT88B.1.177.810.001515
S543F543FttCttT88B.1.2340.001056
S543F543FttCttT88B.1.36.170.003953
S543F543FttCttT88B.1.36.310.014011
S543F543FttCttT88B.1.466.20.00313
S543F543FttCttT77AY.4.30.005892
S543F543FttCttT77AY.7.20.003915
S543F543FttCttT77B.1.1.3180.002112
S543F543FttCttT77B.1.3240.011236
S543F543FttCttT77B.1.36.190.064815
S543F543FttCttT77B.1.3690.001997
S543F543FttCttT77B.1.4090.005469
S543F543FttCttT66A.10.001691
S543F543FttCttT66A.2.50.002994
S543F543FttCttT66AB.10.04918
S543F543FttCttT66AY.1110.001099
S543F543FttCttT66AY.1160.001721
S543F543FttCttT66AY.130.000966
S543F543FttCttT66AY.16.10.00282
S543F543FttCttT66AY.39.10.000238
S543F543FttCttT66AY.570.003937
S543F543FttCttT66AY.690.00112
S543F543FttCttT66AY.920.001724
S543F543FttCttT66AY.940.002656
S543F543FttCttT66AY.980.000474
S543F543FttCttT66B.1.1.2970.013423
S543F543FttCttT66B.1.1.3170.00247
S543F543FttCttT66B.1.1310.052632
S543F543FttCttT66B.1.177.600.001311
S543F543FttCttT66B.1.258.140.005882
S543F543FttCttT66B.1.36.290.003104
S543F543FttCttT66B.1.36.360.003612
S543F543FttCttT55AU.10.006329
S543F543FttCttT55AY.120.00158
S543F543FttCttT55AY.4.2.10.000745
S543F543FttCttT55AY.46.40.000823
S543F543FttCttT55AY.790.006053
S543F543FttCttT55B.1.1.280.001556
S543F543FttCttT55B.1.1.3060.002192
S543F543FttCttT55B.1.1.4160.004525
S543F543FttCttT55B.1.177.870.003639
S543F543FttCttT55B.1.4160.006345
S543F543FttCttT55B.1.4990.005252
S543F543FttCttT55B.1.5750.001517
S543F543FttCttT55B.1.6090.002397
S543F543FttCttT55B.1.617.10.000645
S543F543FttCttT44A.2.5.20.006289
S543F543FttCttT44A.23.10.002817
S543F543FttCttT44AE.80.001956
S543F543FttCttT44AY.110.005355
S543F543FttCttT44AY.240.001724
S543F543FttCttT44AY.540.000381
S543F543FttCttT44B.1.1.1890.006051
S543F543FttCttT44B.1.1.2730.027027
S543F543FttCttT44B.1.177.560.00267
S543F543FttCttT44B.1.177.730.002265
S543F543FttCttT44B.1.2320.002149
S543F543FttCttT44B.1.258.170.000416
S543F543FttCttT44B.1.3670.00317
S543F543FttCttT44B.1.4280.004082
S543F543FttCttT44B.1.5090.003463
S543F543FttCttT44B.1.5610.001588
S543F543FttCttT44B.1.5950.001044
S543F543FttCttT44B.1.5970.018519
S543F543FttCttT44C.180.010363
S543F543FttCttT44C.360.003643
S543F543FttCttT44N.50.007067
S543F543FttCttT44P.1.150.000929
S543F543FttCttT44Q.30.00058
S543F543FttCttT33AD.20.000657
S543F543FttCttT33AY.10.001187
S543F543FttCttT33AY.1060.001005
S543F543FttCttT33AY.120.10.000963
S543F543FttCttT33AY.140.000264
S543F543FttCttT33AY.220.006276
S543F543FttCttT33AY.270.000194
S543F543FttCttT33AY.300.001187
S543F543FttCttT33AY.320.001597
S543F543FttCttT33AY.4.50.000322
S543F543FttCttT33AY.46.50.000595
S543F543FttCttT33AY.5.30.001012
S543F543FttCttT33AY.750.000168
S543F543FttCttT33AY.830.005172
S543F543FttCttT33AY.9.10.000251
S543F543FttCttT33AY.930.000819
S543F543FttCttT33AY.990.003148
S543F543FttCttT33AY.99.20.000276
S543F543FttCttT33B.1.1.1760.001318
S543F543FttCttT33B.1.1.2200.005576
S543F543FttCttT33B.1.1.2630.004673
S543F543FttCttT33B.1.1.3770.004144
S543F543FttCttT33B.1.1390.002199
S543F543FttCttT33B.1.177.820.001432
S543F543FttCttT33B.1.351.20.000908
S543F543FttCttT33B.1.36.160.004274
S543F543FttCttT33B.1.36.180.001261
S543F543FttCttT33B.1.4700.004213
S543F543FttCttT33P.1.10.000953
S543F543FttCttT22AY.1010.000981
S543F543FttCttT22AY.1070.000932
S543F543FttCttT22AY.1090.001479
S543F543FttCttT22AY.1100.000225
S543F543FttCttT22AY.1140.000462
S543F543FttCttT22AY.116.10.000623
S543F543FttCttT22AY.160.000759
S543F543FttCttT22AY.20.000712
S543F543FttCttT22AY.34.10.00102
S543F543FttCttT22AY.380.000999
S543F543FttCttT22AY.4.40.000818
S543F543FttCttT22AY.46.60.000144
S543F543FttCttT22AY.590.001059
S543F543FttCttT22AY.600.001876
S543F543FttCttT22AY.680.000547
S543F543FttCttT22AY.710.00095
S543F543FttCttT22AY.75.10.000361
S543F543FttCttT22AY.9.20.000073
S543F543FttCttT22AY.900.001369
S543F543FttCttT22B.1.1.1700.002494
S543F543FttCttT22B.1.1.2750.022472
S543F543FttCttT22B.1.1.3020.004149
S543F543FttCttT22B.1.1.3040.005618
S543F543FttCttT22B.1.1.3120.003824
S543F543FttCttT22B.1.1.3480.001592
S543F543FttCttT22B.1.1.3690.000892
S543F543FttCttT22B.1.1.370.000386
S543F543FttCttT22B.1.1.3970.004505
S543F543FttCttT22B.1.1.5210.010695
S543F543FttCttT22B.1.1040.00738
S543F543FttCttT22B.1.110.30.001437
S543F543FttCttT22B.1.1200.015385
S543F543FttCttT22B.1.1280.001271
S543F543FttCttT22B.1.177.160.001329
S543F543FttCttT22B.1.177.460.001837
S543F543FttCttT22B.1.177.580.002663
S543F543FttCttT22B.1.177.60.001953
S543F543FttCttT22B.1.351.30.001753
S543F543FttCttT22B.1.4000.000858
S543F543FttCttT22B.1.4010.016393
S543F543FttCttT22B.120.012821
S543F543FttCttT22C.350.001548
S543F543FttCttT22P.1.120.000968
S543F543FttCttT11AL.10.012987
S543F543FttCttT11AY.1080.001103
S543F543FttCttT11AY.190.00114
S543F543FttCttT11AY.310.018519
S543F543FttCttT11AY.350.000233
S543F543FttCttT11AY.460.000104
S543F543FttCttT11AY.480.000465
S543F543FttCttT11AY.520.000814
S543F543FttCttT11AY.530.000288
S543F543FttCttT11AY.550.000917
S543F543FttCttT11AY.620.000436
S543F543FttCttT11AY.70.000196
S543F543FttCttT11AY.780.001541
S543F543FttCttT11AY.840.000437
S543F543FttCttT11AY.850.000427
S543F543FttCttT11AY.860.00083
S543F543FttCttT11AY.880.000884
S543F543FttCttT11AY.950.000761
S543F543FttCttT11AY.970.001701
S543F543FttCttT11AZ.20.000821
S543F543FttCttT11B.1.1.1110.014706
S543F543FttCttT11B.1.1.1410.002012
S543F543FttCttT11B.1.1.1580.012195
S543F543FttCttT11B.1.1.1610.003534
S543F543FttCttT11B.1.1.1920.002309
S543F543FttCttT11B.1.1.1980.001468
S543F543FttCttT11B.1.1.2360.006897
S543F543FttCttT11B.1.1.2410.00207
S543F543FttCttT11B.1.1.250.000569
S543F543FttCttT11B.1.1.2650.003155
S543F543FttCttT11B.1.1.2940.001266
S543F543FttCttT11B.1.1.3000.010753
S543F543FttCttT11B.1.1.3260.001761
S543F543FttCttT11B.1.1.3350.012987
S543F543FttCttT11B.1.1.3670.055556
S543F543FttCttT11B.1.1.3710.010417
S543F543FttCttT11B.1.1.3850.004464
S543F543FttCttT11B.1.1.4020.011111
S543F543FttCttT11B.1.1.4040.015873
S543F543FttCttT11B.1.1.4090.002833
S543F543FttCttT11B.1.1.4330.001425
S543F543FttCttT11B.1.1.4340.000349
S543F543FttCttT11B.1.1.4640.001473
S543F543FttCttT11B.1.1.470.005348
S543F543FttCttT11B.1.1.4870.005587
S543F543FttCttT11B.1.1.5120.028571
S543F543FttCttT11B.1.1.5150.02
S543F543FttCttT11B.1.1.5170.006803
S543F543FttCttT11B.1.1.5180.006329
S543F543FttCttT11B.1.1.5230.001563
S543F543FttCttT11B.1.1.5260.003546
S543F543FttCttT11B.1.1.610.008772
S543F543FttCttT11B.1.1580.02381
S543F543FttCttT11B.1.160.240.004425
S543F543FttCttT11B.1.177.100.000878
S543F543FttCttT11B.1.177.350.000691
S543F543FttCttT11B.1.177.40.000211
S543F543FttCttT11B.1.177.420.000894
S543F543FttCttT11B.1.177.540.000606
S543F543FttCttT11B.1.177.630.002703
S543F543FttCttT11B.1.177.650.000665
S543F543FttCttT11B.1.177.830.001481
S543F543FttCttT11B.1.177.90.001332
S543F543FttCttT11B.1.1890.004292
S543F543FttCttT11B.1.2100.002132
S543F543FttCttT11B.1.2180.005155
S543F543FttCttT11B.1.220.001318
S543F543FttCttT11B.1.2200.01087
S543F543FttCttT11B.1.2360.002053
S543F543FttCttT11B.1.2390.001221
S543F543FttCttT11B.1.258.70.001912
S543F543FttCttT11B.1.2650.001271
S543F543FttCttT11B.1.3200.001245
S543F543FttCttT11B.1.3290.000608
S543F543FttCttT11B.1.3330.010526
S543F543FttCttT11B.1.3500.002933
S543F543FttCttT11B.1.36.10.00114
S543F543FttCttT11B.1.36.100.004785
S543F543FttCttT11B.1.36.120.009615
S543F543FttCttT11B.1.36.70.004
S543F543FttCttT11B.1.3750.00082
S543F543FttCttT11B.1.3890.001002
S543F543FttCttT11B.1.390.003906
S543F543FttCttT11B.1.3960.000706
S543F543FttCttT11B.1.4020.009804
S543F543FttCttT11B.1.4080.00369
S543F543FttCttT11B.1.4170.028571
S543F543FttCttT11B.1.4240.008065
S543F543FttCttT11B.1.4330.003195
S543F543FttCttT11B.1.4380.006536
S543F543FttCttT11B.1.4460.02
S543F543FttCttT11B.1.4530.003236
S543F543FttCttT11B.1.5050.004386
S543F543FttCttT11B.1.5160.001957
S543F543FttCttT11B.1.5240.001406
S543F543FttCttT11B.1.5270.003704
S543F543FttCttT11B.1.5330.009615
S543F543FttCttT11B.1.5580.004566
S543F543FttCttT11B.1.5680.001111
S543F543FttCttT11B.1.5770.000687
S543F543FttCttT11B.1.5800.004065
S543F543FttCttT11B.1.596.10.009346
S543F543FttCttT11B.1.6000.005848
S543F543FttCttT11B.1.6120.002653
S543F543FttCttT11B.1.6160.02439
S543F543FttCttT11B.1.6230.000536
S543F543FttCttT11B.1.6270.00202
S543F543FttCttT11B.1.910.002075
S543F543FttCttT11B.40.002208
S543F543FttCttT11C.1.20.004255
S543F543FttCttT11C.120.007194
S543F543FttCttT11C.36.3.10.002717
S543F543FttCttT11C.37.10.002618
S543F543FttCttT11P.1.100.000269
S543F543FttCttT11P.1.80.004785
S543F543FttCttT11Q.40.000455
S543F543FttCttT11S.10.00495
S543F543FttCttT11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.