CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = F43L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S43F43LnonsynttCttG50210.4221689-21691
S43F43LnonsynTtcCtc50160.3221689-21691
S43F43LnonsynttCttA50100.221689-21691
S43F43LnonsynTtCCtT5020.0421689-21691
S43F43LnonsynTtCCtG5010.0221689-21691

Details of the mutation F43L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S43F43LttCttG2150All0.000004
S43F43LTtcCtc1650All0.000003
S43F43LttCttA1050All0.000002
S43F43LTtCCtT250All0
S43F43LTtCCtG150All0
S43F43LttCttG914B.1.1.70.000008
S43F43LTtcCtc514B.1.1.70.000004
S43F43LttCttG99B.1.5250.001018
S43F43LTtCCtT240.111111
S43F43LTtcCtc240.111111
S43F43LttCttG13B.10.000009
S43F43LTtcCtc13B.10.000009
S43F43LttCttA13B.10.000009
S43F43LTtcCtc12B.1.1770.000013
S43F43LttCttA12B.1.1770.000013
S43F43LttCttA22B.1.20.000018
S43F43LTtcCtc11A.20.000662
S43F43LTtcCtc11AY.1020.000027
S43F43LTtcCtc11AY.1110.000183
S43F43LTtcCtc11AY.120.2.10.000498
S43F43LttCttA11AY.390.000025
S43F43LttCttA11AY.420.00004
S43F43LttCttA11AY.430.000004
S43F43LTtcCtc11B0.000128
S43F43LttCttA11B.1.10.000018
S43F43LttCttG11B.1.1.250.000569
S43F43LTtCCtG11B.1.1.3060.000438
S43F43LTtcCtc11B.1.177.180.00116
S43F43LTtcCtc11B.1.360.000146
S43F43LttCttA11B.1.4240.008065
S43F43LttCttA11B.1.4590.004082
S43F43LttCttG11B.1.6360.006711