CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = F2L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S2F2LnonsynttTttA5815020.86402821566-21568
S2F2LnonsynTttCtt581720.12392421566-21568
S2F2LnonsynttTttG58170.012048221566-21568

Details of the mutation F2L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S2F2LttTttA502581All0.000096
S2F2LTttCtt72581All0.000014
S2F2LttTttG7581All0.000001
S2F2LttTttA116128B.1.1.70.000104
S2F2LTttCtt12128B.1.1.70.000011
S2F2LttTttA5872B.1.20.000511
S2F2LTttCtt1372B.1.20.000114
S2F2LttTttG172B.1.20.000009
S2F2LttTttA5454P.50.739726
S2F2LttTttA3333B.1.5170.014091
S2F2LttTttA2729B.1.2580.001797
S2F2LTttCtt229B.1.2580.000133
S2F2LttTttA1921B.1.617.20.000072
S2F2LTttCtt221B.1.617.20.000008
S2F2LttTttA1719AY.430.000075
S2F2LTttCtt219AY.430.000009
S2F2LttTttA1818B.1.1600.000561
S2F2LttTttA1117AY.40.000017
S2F2LTttCtt417AY.40.000006
S2F2LttTttG217AY.40.000003
S2F2LttTttA1112B.10.000101
S2F2LTttCtt112B.10.000009
S2F2LttTttA99AY.60.00037
S2F2LttTttA99B.1.1.5190.000357
S2F2LttTttA68B.1.10.000109
S2F2LTttCtt28B.1.10.000036
S2F2LttTttA77B0.000895
S2F2LttTttA56AY.1030.000031
S2F2LTttCtt16AY.1030.000006
S2F2LttTttA66AY.39.10.000238
S2F2LttTttA56B.1.4290.000118
S2F2LttTttG16B.1.4290.000024
S2F2LttTttA66B.1.5770.004124
S2F2LttTttA55AY.340.000485
S2F2LttTttA35AY.440.000018
S2F2LTttCtt15AY.440.000006
S2F2LttTttG15AY.440.000006
S2F2LttTttA55B.1.1.2940.006329
S2F2LttTttA55B.1.4480.013123
S2F2LTttCtt34AY.390.000074
S2F2LttTttA14AY.390.000025
S2F2LttTttA44B.1.1.2140.000222
S2F2LttTttA33AY.30.00003
S2F2LttTttA33AY.330.0002
S2F2LttTttA33AY.4.20.000065
S2F2LTttCtt33B.1.1.2430.012245
S2F2LTttCtt33B.1.1390.002199
S2F2LTttCtt23B.1.1770.000026
S2F2LttTttA13B.1.1770.000013
S2F2LTttCtt33B.1.177.810.000568
S2F2LttTttA22AY.1190.000071
S2F2LTttCtt12AY.1200.000037
S2F2LttTttA12AY.1200.000037
S2F2LTttCtt12AY.230.00007
S2F2LttTttA12AY.230.00007
S2F2LTttCtt22AY.350.000466
S2F2LttTttG12AY.420.00004
S2F2LttTttA12AY.420.00004
S2F2LttTttA22AY.90.000135
S2F2LttTttA22B.1.1.2070.002364
S2F2LttTttA22B.1.1.280.000622
S2F2LttTttA22B.1.1.410.012658
S2F2LttTttA22B.1.3510.000059
S2F2LttTttA22B.1.351.20.000605
S2F2LttTttA22B.1.4270.000101
S2F2LTttCtt12B.1.466.20.000391
S2F2LttTttA12B.1.466.20.000391
S2F2LttTttG12B.1.5260.000024
S2F2LttTttA12B.1.5260.000024
S2F2LttTttA22B.1.5510.002581
S2F2LttTttA22B.1.617.10.000258
S2F2LTttCtt22B.1.6210.000177
S2F2LTttCtt12P.10.000016
S2F2LttTttA12P.10.000016
S2F2LTttCtt11A.2.40.003367
S2F2LttTttA11A.2.50.000499
S2F2LttTttA11AM.40.003571
S2F2LttTttA11AY.1000.000046
S2F2LttTttA11AY.1020.000027
S2F2LttTttA11AY.116.10.000311
S2F2LttTttA11AY.1210.000135
S2F2LttTttA11AY.140.000088
S2F2LTttCtt11AY.200.000039
S2F2LTttCtt11AY.23.10.000417
S2F2LttTttA11AY.260.000028
S2F2LttTttA11AY.290.000016
S2F2LTttCtt11AY.4.2.10.000149
S2F2LttTttA11AY.460.000104
S2F2LttTttA11AY.680.000274
S2F2LTttCtt11AY.9.10.000084
S2F2LttTttA11B.1.1.1860.003436
S2F2LTttCtt11B.1.1.250.000569
S2F2LTttCtt11B.1.1.2840.000107
S2F2LttTttA11B.1.1.3060.000438
S2F2LttTttA11B.1.1.3180.000302
S2F2LttTttA11B.1.1.3980.003226
S2F2LttTttA11B.1.160.80.001289
S2F2LttTttA11B.1.177.40.000211
S2F2LttTttA11B.1.177.510.004566
S2F2LttTttA11B.1.177.540.000606
S2F2LttTttA11B.1.177.870.000728
S2F2LttTttA11B.1.2210.000071
S2F2LttTttA11B.1.2430.00007
S2F2LttTttA11B.1.2680.010417
S2F2LttTttA11B.1.3320.003497
S2F2LttTttA11B.1.360.000146
S2F2LttTttA11B.1.36.180.00042
S2F2LTttCtt11B.1.3960.000706
S2F2LTttCtt11B.1.3970.004854
S2F2LTttCtt11B.1.6090.000479