CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = F157del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S157F157del1delTTC-NN2191040.47488622031-22033
S157F157del1delttCtt-219730.33333322031-22033
S157F157del1delTtC-tN219320.14611922031-22033
S157F157del1delTTC-GT21940.018264822031-22033
S157F157del1delTtC-tT21930.013698622031-22033
S157F157del1delTtCGt-21930.013698622031-22033

Details of the mutation F157del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S157F157del1TTC-NN104219All0.00002
S157F157del1ttCtt-73219All0.000014
S157F157del1TtC-tN32219All0.000006
S157F157del1TTC-GT4219All0.000001
S157F157del1TtCGt-3219All0.000001
S157F157del1TtC-tT3219All0.000001
S157F157del1TTC-NN1231B.1.617.20.000045
S157F157del1ttCtt-1231B.1.617.20.000045
S157F157del1TtC-tN631B.1.617.20.000023
S157F157del1TtC-tT131B.1.617.20.000004
S157F157del1ttCtt-1919AY.1010.009318
S157F157del1TTC-NN1819AY.1030.000112
S157F157del1TtC-tN119AY.1030.000006
S157F157del1ttCtt-517AY.430.000022
S157F157del1TTC-NN417AY.430.000018
S157F157del1TtC-tN417AY.430.000018
S157F157del1TtCGt-217AY.430.000009
S157F157del1TTC-GT217AY.430.000009
S157F157del1TTC-NN1415AY.250.000084
S157F157del1TtC-tN115AY.250.000006
S157F157del1ttCtt-410AY.40.000006
S157F157del1TtC-tN310AY.40.000005
S157F157del1TTC-GT110AY.40.000002
S157F157del1TTC-NN110AY.40.000002
S157F157del1TtC-tT110AY.40.000002
S157F157del1TTC-NN78AY.440.000043
S157F157del1TtC-tN18AY.440.000006
S157F157del1TTC-NN77AY.470.000218
S157F157del1ttCtt-56AY.1020.000133
S157F157del1TTC-NN16AY.1020.000027
S157F157del1ttCtt-66AY.99.20.000553
S157F157del1TTC-NN45AY.120.001264
S157F157del1TtC-tN15AY.120.000316
S157F157del1TTC-NN35AY.610.000314
S157F157del1ttCtt-25AY.610.00021
S157F157del1TTC-NN44AY.3.10.000341
S157F157del1ttCtt-34AY.340.000291
S157F157del1TTC-NN14AY.340.000097
S157F157del1TTC-NN33AY.1180.000188
S157F157del1TTC-NN23AY.200.000078
S157F157del1ttCtt-13AY.200.000039
S157F157del1TTC-NN23AY.260.000057
S157F157del1TtC-tN13AY.260.000028
S157F157del1TTC-NN33AY.30.00003
S157F157del1TTC-NN23AY.450.000243
S157F157del1TtC-tN13AY.450.000122
S157F157del1ttCtt-23AY.50.000041
S157F157del1TtC-tN13AY.50.000021
S157F157del1ttCtt-33AY.9.20.00011
S157F157del1TtC-tN12AY.1000.000046
S157F157del1TTC-NN12AY.1000.000046
S157F157del1TTC-NN12AY.130.000161
S157F157del1TtC-tN12AY.130.000161
S157F157del1TTC-NN22AY.350.000466
S157F157del1ttCtt-22AY.380.000999
S157F157del1TTC-NN22AY.390.000049
S157F157del1TtC-tN22AY.420.00008
S157F157del1TTC-NN22AY.5.30.000675
S157F157del1ttCtt-12AY.75.10.00018
S157F157del1TtC-tN12AY.75.10.00018
S157F157del1TtC-tN12AY.98.10.000048
S157F157del1TTC-GT12AY.98.10.000048
S157F157del1TtC-tN12B.1.6210.000089
S157F157del1ttCtt-12B.1.6210.000089
S157F157del1ttCtt-11A.2.40.003367
S157F157del1TtC-tN11AY.1060.000335
S157F157del1TTC-NN11AY.1080.001103
S157F157del1TTC-NN11AY.1100.000113
S157F157del1TTC-NN11AY.116.10.000311
S157F157del1ttCtt-11AY.1170.000085
S157F157del1TTC-NN11AY.1190.000035
S157F157del1TTC-NN11AY.120.2.10.000498
S157F157del1TTC-NN11AY.230.00007
S157F157del1TtC-tN11AY.330.000067
S157F157del1ttCtt-11AY.4.50.000107
S157F157del1ttCtt-11AY.46.60.000072
S157F157del1TtC-tN11AY.60.000041
S157F157del1TtC-tN11AY.650.000533
S157F157del1TtCGt-11AY.670.000464
S157F157del1ttCtt-11AY.740.000116
S157F157del1TTC-NN11AY.9.10.000084
S157F157del1TtC-tT11AY.940.000443
S157F157del1ttCtt-11AY.980.000079
S157F157del1TTC-NN11AY.990.001049
S157F157del1ttCtt-11C.370.000116
S157F157del1TtC-tN11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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