CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : Mut = E156del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	156	E156del		del	GAG	---	2520123	2520123	1	22028-22030

Details of the mutation E156del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	156	E156del	GAG	---	2520123	2520123	All	0.482003
S	156	E156del	GAG	---	603309	603309	AY.4	0.939004
S	156	E156del	GAG	---	245949	245949	B.1.617.2	0.9261
S	156	E156del	GAG	---	210926	210926	AY.43	0.9345
S	156	E156del	GAG	---	153780	153780	AY.25	0.924959
S	156	E156del	GAG	---	146001	146001	AY.103	0.906529
S	156	E156del	GAG	---	140680	140680	AY.44	0.856285
S	156	E156del	GAG	---	92518	92518	AY.3	0.92022
S	156	E156del	GAG	---	63370	63370	AY.29	0.999574
S	156	E156del	GAG	---	45407	45407	AY.5	0.937619
S	156	E156del	GAG	---	45317	45317	AY.4.2	0.982866
S	156	E156del	GAG	---	33712	33712	AY.39	0.833074
S	156	E156del	GAG	---	33524	33524	AY.102	0.888854
S	156	E156del	GAG	---	31914	31914	AY.26	0.903491
S	156	E156del	GAG	---	30051	30051	AY.47	0.934741
S	156	E156del	GAG	---	24983	24983	AY.120	0.92884
S	156	E156del	GAG	---	24914	24914	AY.9.2	0.915081
S	156	E156del	GAG	---	24817	24817	AY.119	0.876245
S	156	E156del	GAG	---	23410	23410	AY.20	0.909833
S	156	E156del	GAG	---	22723	22723	AY.6	0.934564
S	156	E156del	GAG	---	22662	22662	AY.39.1	0.897718
S	156	E156del	GAG	---	21751	21751	AY.42	0.875045
S	156	E156del	GAG	---	19169	19169	AY.98.1	0.928371
S	156	E156del	GAG	---	18532	18532	AY.100	0.852595
S	156	E156del	GAG	---	15519	15519	AY.75	0.869412
S	156	E156del	GAG	---	15307	15307	AY.27	0.99068
S	156	E156del	GAG	---	14357	14357	AY.118	0.899449
S	156	E156del	GAG	---	13689	13689	AY.33	0.914124
S	156	E156del	GAG	---	13587	13587	AY.9	0.918413
S	156	E156del	GAG	---	12578	12578	AY.46.6	0.908224
S	156	E156del	GAG	---	12408	12408	AY.23	0.865453
S	156	E156del	GAG	---	11468	11468	AY.98	0.905917
S	156	E156del	GAG	---	11316	11316	AY.9.1	0.947421
S	156	E156del	GAG	---	10843	10843	AY.3.1	0.924461
S	156	E156del	GAG	---	10170	10170	AY.14	0.895089
S	156	E156del	GAG	---	10008	10008	AY.117	0.845842
S	156	E156del	GAG	---	9783	9783	AY.99.2	0.901576
S	156	E156del	GAG	---	9529	9529	AY.34	0.923979
S	156	E156del	GAG	---	9249	9249	AY.54	0.881865
S	156	E156del	GAG	---	8790	8790	AY.4.5	0.944856
S	156	E156del	GAG	---	8459	8459	AY.7.1	0.953342
S	156	E156del	GAG	---	7497	7497	AY.61	0.78552
S	156	E156del	GAG	---	7493	7493	AY.46	0.779871
S	156	E156del	GAG	---	6990	6990	AY.74	0.808373
S	156	E156del	GAG	---	6782	6782	AY.45	0.825262
S	156	E156del	GAG	---	6723	6723	AY.121	0.909743
S	156	E156del	GAG	---	6455	6455	AY.4.2.1	0.96171
S	156	E156del	GAG	---	6302	6302	AY.113	0.897337
S	156	E156del	GAG	---	5999	5999	AY.110	0.67602
S	156	E156del	GAG	---	5995	5995	AY.36	0.888543
S	156	E156del	GAG	---	5741	5741	AY.46.4	0.944399
S	156	E156del	GAG	---	5271	5271	AY.13	0.848519
S	156	E156del	GAG	---	5110	5110	AY.111	0.935897
S	156	E156del	GAG	---	4890	4890	AY.46.5	0.970238
S	156	E156del	GAG	---	4803	4803	AY.69	0.896584
S	156	E156del	GAG	---	4758	4758	AY.7	0.932575
S	156	E156del	GAG	---	4694	4694	AY.75.1	0.846376
S	156	E156del	GAG	---	4440	4440	AY.70	0.925771
S	156	E156del	GAG	---	3927	3927	AY.114	0.907557
S	156	E156del	GAG	---	3854	3854	AY.29.1	0.849835
S	156	E156del	GAG	---	3777	3777	AY.35	0.880214
S	156	E156del	GAG	---	3645	3645	AY.93	0.995358
S	156	E156del	GAG	---	3305	3305	AY.5.4	0.914499
S	156	E156del	GAG	---	3116	3116	AY.41	0.915932
S	156	E156del	GAG	---	2952	2952	AY.92	0.848032
S	156	E156del	GAG	---	2932	2932	AY.12	0.926675
S	156	E156del	GAG	---	2903	2903	AY.37	0.917509
S	156	E156del	GAG	---	2838	2838	AY.116.1	0.883837
S	156	E156del	GAG	---	2834	2834	AY.53	0.814836
S	156	E156del	GAG	---	2788	2788	AY.120.1	0.895024
S	156	E156del	GAG	---	2751	2751	AY.68	0.75308
S	156	E156del	GAG	---	2700	2700	AY.116	0.774305
S	156	E156del	GAG	---	2632	2632	AY.5.3	0.887989
S	156	E156del	GAG	---	2594	2594	AY.106	0.868721
S	156	E156del	GAG	---	2553	2553	AY.63	0.987621
S	156	E156del	GAG	---	2536	2536	AY.2	0.903134
S	156	E156del	GAG	---	2332	2332	AY.23.1	0.973289
S	156	E156del	GAG	---	2229	2229	AY.4.4	0.912029
S	156	E156del	GAG	---	2189	2189	AY.85	0.93507
S	156	E156del	GAG	---	2160	2160	AY.62	0.941176
S	156	E156del	GAG	---	2158	2158	AY.24	0.930172
S	156	E156del	GAG	---	2079	2079	AY.94	0.920319
S	156	E156del	GAG	---	2060	2060	AY.30	0.815196
S	156	E156del	GAG	---	1893	1893	AY.71	0.899287
S	156	E156del	GAG	---	1887	1887	AY.107	0.87931
S	156	E156del	GAG	---	1867	1867	AY.1	0.738821
S	156	E156del	GAG	---	1867	1867	AY.48	0.868372
S	156	E156del	GAG	---	1824	1824	AY.120.2.1	0.908819
S	156	E156del	GAG	---	1798	1798	AY.67	0.834726
S	156	E156del	GAG	---	1798	1798	AY.84	0.786527
S	156	E156del	GAG	---	1767	1767	AY.101	0.866601
S	156	E156del	GAG	---	1684	1684	AY.7.2	0.941834
S	156	E156del	GAG	---	1682	1682	AY.38	0.83974
S	156	E156del	GAG	---	1652	1652	AY.10	0.875464
S	156	E156del	GAG	---	1605	1605	AY.59	0.850106
S	156	E156del	GAG	---	1591	1591	AY.8	0.964242
S	156	E156del	GAG	---	1528	1528	AY.64	0.909524
S	156	E156del	GAG	---	1516	1516	AY.65	0.808102
S	156	E156del	GAG	---	1488	1488	AY.32	0.792332
S	156	E156del	GAG	---	1477	1477	AY.57	0.96916
S	156	E156del	GAG	---	1469	1469	AY.46.2	0.933291
S	156	E156del	GAG	---	1463	1463	AY.73	0.973387
S	156	E156del	GAG	---	1428	1428	AY.16	0.542141
S	156	E156del	GAG	---	1411	1411	AY.105	0.907395
S	156	E156del	GAG	---	1353	1353	AY.39.1.1	0.980435
S	156	E156del	GAG	---	1352	1352	AY.90	0.925394
S	156	E156del	GAG	---	1294	1294	AY.34.1	0.659867
S	156	E156del	GAG	---	1276	1276	AY.4.1	0.941003
S	156	E156del	GAG	---	1207	1207	AY.109	0.892751
S	156	E156del	GAG	---	1148	1148	AY.91	0.838568
S	156	E156del	GAG	---	1142	1142	AY.50	0.91287
S	156	E156del	GAG	---	1133	1133	AY.86	0.940249
S	156	E156del	GAG	---	1105	1105	AY.4.3	0.930135
S	156	E156del	GAG	---	1097	1097	AY.87	0.913405
S	156	E156del	GAG	---	998	998	AY.51	0.907273
S	156	E156del	GAG	---	996	996	AY.46.3	0.929972
S	156	E156del	GAG	---	990	990	AY.58	0.898367
S	156	E156del	GAG	---	962	962	AY.60	0.902439
S	156	E156del	GAG	---	943	943	AY.46.1	0.968172
S	156	E156del	GAG	---	918	918	AY.88	0.811671
S	156	E156del	GAG	---	895	895	AY.66	0.957219
S	156	E156del	GAG	---	884	884	AY.16.1	0.415414
S	156	E156del	GAG	---	832	832	AY.80	0.939052
S	156	E156del	GAG	---	818	818	AY.52	0.666124
S	156	E156del	GAG	---	781	781	AY.79	0.945521
S	156	E156del	GAG	---	772	772	AY.40	0.744455
S	156	E156del	GAG	---	765	765	AY.99	0.802728
S	156	E156del	GAG	---	756	756	AY.108	0.833517
S	156	E156del	GAG	---	750	750	AY.19	0.855188
S	156	E156del	GAG	---	715	715	AY.95	0.54414
S	156	E156del	GAG	---	705	705	AY.72	0.959184
S	156	E156del	GAG	---	701	701	AY.11	0.93842
S	156	E156del	GAG	---	684	684	AY.120.2	0.879177
S	156	E156del	GAG	---	622	622	AY.39.2	0.958398
S	156	E156del	GAG	---	611	611	AY.82	0.829037
S	156	E156del	GAG	---	606	606	AY.77	0.683202
S	156	E156del	GAG	---	601	601	B.1.1.523	0.939063
S	156	E156del	GAG	---	577	577	AY.78	0.88906
S	156	E156del	GAG	---	573	573	AY.99.1	0.889752
S	156	E156del	GAG	---	544	544	AY.83	0.937931
S	156	E156del	GAG	---	499	499	AY.56	0.800963
S	156	E156del	GAG	---	485	485	AY.28	0.916824
S	156	E156del	GAG	---	475	475	AY.97	0.807823
S	156	E156del	GAG	---	473	473	AY.9.2.1	0.934783
S	156	E156del	GAG	---	460	460	AY.104	0.912698
S	156	E156del	GAG	---	458	458	AY.81	0.912351
S	156	E156del	GAG	---	455	455	AY.21	0.863378
S	156	E156del	GAG	---	447	447	AY.22	0.935146
S	156	E156del	GAG	---	393	393	AY.15	0.873333
S	156	E156del	GAG	---	374	374	AY.5.2	0.921182
S	156	E156del	GAG	---	300	300	AY.55	0.275229
S	156	E156del	GAG	---	243	243	AY.5.1	0.913534
S	156	E156del	GAG	---	236	236	AY.91.1	0.95935
S	156	E156del	GAG	---	219	219	AY.49	0.699681
S	156	E156del	GAG	---	192	192	B.1	0.001759
S	156	E156del	GAG	---	186	186	AY.76	0.898551
S	156	E156del	GAG	---	186	186	AY.89	0.911765
S	156	E156del	GAG	---	163	163	AY.96	0.338174
S	156	E156del	GAG	---	112	112	AY.17	0.918033
S	156	E156del	GAG	---	112	112	B	0.014315
S	156	E156del	GAG	---	97	97	B.1.617.3	0.289552
S	156	E156del	GAG	---	94	94	AY.18	0.949495
S	156	E156del	GAG	---	57	57	B.1.1.7	0.000051
S	156	E156del	GAG	---	50	50	AY.115	0.260417
S	156	E156del	GAG	---	46	46	AY.31	0.851852
S	156	E156del	GAG	---	31	31	B.1.1	0.000562
S	156	E156del	GAG	---	24	24	B.1.177	0.000316
S	156	E156del	GAG	---	18	18	B.1.617.1	0.002321
S	156	E156del	GAG	---	18	18	P.1	0.000284
S	156	E156del	GAG	---	6	6	B.1.1.317	0.00247
S	156	E156del	GAG	---	6	6	B.1.214	0.021978
S	156	E156del	GAG	---	5	5	A	0.001935
S	156	E156del	GAG	---	5	5	B.1.131	0.04386
S	156	E156del	GAG	---	5	5	B.1.623	0.002682
S	156	E156del	GAG	---	5	5	P.1.1	0.001588
S	156	E156del	GAG	---	5	5	P.1.15	0.001162
S	156	E156del	GAG	---	4	4	B.1.1.526	0.014184
S	156	E156del	GAG	---	4	4	B.1.474	0.007605
S	156	E156del	GAG	---	4	4	B.1.604	0.068966
S	156	E156del	GAG	---	3	3	A.2.5	0.001497
S	156	E156del	GAG	---	3	3	B.1.351	0.000089
S	156	E156del	GAG	---	3	3	B.1.36.8	0.003
S	156	E156del	GAG	---	3	3	B.1.576	0.00272
S	156	E156del	GAG	---	3	3	B.1.596	0.000261
S	156	E156del	GAG	---	3	3	B.1.628	0.001057
S	156	E156del	GAG	---	2	2		0.111111
S	156	E156del	GAG	---	2	2	AU.3	0.004219
S	156	E156del	GAG	---	2	2	B.1.1.315	0.016949
S	156	E156del	GAG	---	2	2	B.1.160	0.000062
S	156	E156del	GAG	---	2	2	B.1.2	0.000018
S	156	E156del	GAG	---	2	2	B.1.208	0.08
S	156	E156del	GAG	---	2	2	B.1.349	0.00143
S	156	E156del	GAG	---	2	2	B.1.530	0.014286
S	156	E156del	GAG	---	2	2	B.1.564	0.000852
S	156	E156del	GAG	---	2	2	B.1.600	0.011696
S	156	E156del	GAG	---	2	2	B.1.609	0.000959
S	156	E156del	GAG	---	2	2	B.1.621	0.000177
S	156	E156del	GAG	---	2	2	P.1.17	0.000324
S	156	E156del	GAG	---	2	2	P.1.7	0.000639
S	156	E156del	GAG	---	1	1	A.2.5.2	0.001572
S	156	E156del	GAG	---	1	1	AT.1	0.005128
S	156	E156del	GAG	---	1	1	AZ.2	0.000821
S	156	E156del	GAG	---	1	1	AZ.5	0.003509
S	156	E156del	GAG	---	1	1	B.1.1.139	0.022727
S	156	E156del	GAG	---	1	1	B.1.1.141	0.002012
S	156	E156del	GAG	---	1	1	B.1.1.241	0.00207
S	156	E156del	GAG	---	1	1	B.1.1.284	0.000107
S	156	E156del	GAG	---	1	1	B.1.1.294	0.001266
S	156	E156del	GAG	---	1	1	B.1.1.311	0.000358
S	156	E156del	GAG	---	1	1	B.1.1.318	0.000302
S	156	E156del	GAG	---	1	1	B.1.1.326	0.001761
S	156	E156del	GAG	---	1	1	B.1.140	0.018868
S	156	E156del	GAG	---	1	1	B.1.142	0.002899
S	156	E156del	GAG	---	1	1	B.1.143	0.021277
S	156	E156del	GAG	---	1	1	B.1.157	0.002985
S	156	E156del	GAG	---	1	1	B.1.160.23	0.004831
S	156	E156del	GAG	---	1	1	B.1.177.16	0.000664
S	156	E156del	GAG	---	1	1	B.1.177.4	0.000211
S	156	E156del	GAG	---	1	1	B.1.177.6	0.000977
S	156	E156del	GAG	---	1	1	B.1.177.62	0.001192
S	156	E156del	GAG	---	1	1	B.1.177.7	0.000165
S	156	E156del	GAG	---	1	1	B.1.177.73	0.000566
S	156	E156del	GAG	---	1	1	B.1.177.87	0.000728
S	156	E156del	GAG	---	1	1	B.1.206	0.000816
S	156	E156del	GAG	---	1	1	B.1.240	0.000216
S	156	E156del	GAG	---	1	1	B.1.241	0.000812
S	156	E156del	GAG	---	1	1	B.1.258	0.000067
S	156	E156del	GAG	---	1	1	B.1.36	0.000146
S	156	E156del	GAG	---	1	1	B.1.362	0.001541
S	156	E156del	GAG	---	1	1	B.1.366	0.004878
S	156	E156del	GAG	---	1	1	B.1.397	0.004854
S	156	E156del	GAG	---	1	1	B.1.415	0.014286
S	156	E156del	GAG	---	1	1	B.1.427	0.00005
S	156	E156del	GAG	---	1	1	B.1.432	0.011236
S	156	E156del	GAG	---	1	1	B.1.459	0.004082
S	156	E156del	GAG	---	1	1	B.1.466.2	0.000391
S	156	E156del	GAG	---	1	1	B.1.485	0.014925
S	156	E156del	GAG	---	1	1	B.1.525	0.000113
S	156	E156del	GAG	---	1	1	B.1.551	0.00129
S	156	E156del	GAG	---	1	1	B.1.561	0.000397
S	156	E156del	GAG	---	1	1	B.1.580	0.004065
S	156	E156del	GAG	---	1	1	B.1.620	0.000946
S	156	E156del	GAG	---	1	1	B.1.621.1	0.000506
S	156	E156del	GAG	---	1	1	B.1.625	0.002353
S	156	E156del	GAG	---	1	1	B.1.629	0.013333
S	156	E156del	GAG	---	1	1	B.1.630	0.005236
S	156	E156del	GAG	---	1	1	B.1.631	0.003367
S	156	E156del	GAG	---	1	1	B.13	0.045455
S	156	E156del	GAG	---	1	1	B.40	0.000364
S	156	E156del	GAG	---	1	1	C.36.3	0.000567
S	156	E156del	GAG	---	1	1	C.37.1	0.002618
S	156	E156del	GAG	---	1	1	P.1.10	0.000269
S	156	E156del	GAG	---	1	1	P.1.17.1	0.000875
S	156	E156del	GAG	---	1	1	P.1.4	0.000977
S	156	E156del	GAG	---	1	1	P.5	0.013699
S	156	E156del	GAG	---	1	1	P.7	0.004367
S	156	E156del	GAG	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.