CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D936N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S936D936NnonsynGacAac427442710.99929824368-24370
S936D936NnonsynGaCAaT427430.00070191924368-24370

Details of the mutation D936N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S936D936NGacAac42714274All0.000817
S936D936NGaCAaT34274All0.000001
S936D936NGacAac15561557B.1.619.10.998076
S936D936NGaCAaT11557B.1.619.10.000641
S936D936NGacAac11151115B.1.6190.971254
S936D936NGacAac591591B.1.1.4860.932177
S936D936NGacAac380381AY.40.000591
S936D936NGaCAaT1381AY.40.000002
S936D936NGacAac6565AY.420.002615
S936D936NGacAac6262B.1.3510.001843
S936D936NGacAac4545B.10.000412
S936D936NGacAac3939B.1.10.000707
S936D936NGacAac3434AY.450.004137
S936D936NGacAac3030B.1.1.70.000027
S936D936NGacAac2828AY.140.002464
S936D936NGacAac2222B.1.617.20.000083
S936D936NGacAac1717AY.250.000102
S936D936NGacAac1314AY.440.000079
S936D936NGaCAaT114AY.440.000006
S936D936NGacAac1313AY.30.000129
S936D936NGacAac1111AY.290.000174
S936D936NGacAac1111AY.430.000049
S936D936NGacAac1111B.1.20.000097
S936D936NGacAac1111Q.10.00139
S936D936NGacAac1010B.1.466.20.003912
S936D936NGacAac88B.1.4270.000404
S936D936NGacAac88B.1.4290.000188
S936D936NGacAac88P.10.000126
S936D936NGacAac77AY.1030.000043
S936D936NGacAac77AY.470.000218
S936D936NGacAac77B.1.2060.00571
S936D936NGacAac66AY.1020.000159
S936D936NGacAac66AY.330.000401
S936D936NGacAac66B.1.1770.000079
S936D936NGacAac66P.1.120.002904
S936D936NGacAac55A.2.5.10.024038
S936D936NGacAac44AY.1110.000733
S936D936NGacAac44AY.200.000155
S936D936NGacAac44B.1.1.2140.000222
S936D936NGacAac44B.1.2400.000862
S936D936NGacAac44C.360.003643
S936D936NGacAac33AY.230.000209
S936D936NGacAac33AY.4.20.000065
S936D936NGacAac33AY.50.000062
S936D936NGacAac33AY.680.000821
S936D936NGacAac33AY.840.001312
S936D936NGacAac33AY.980.000237
S936D936NGacAac33B.1.1.580.016129
S936D936NGacAac33B.1.1700.012931
S936D936NGacAac33B.1.36.290.001552
S936D936NGacAac33B.1.5170.001281
S936D936NGacAac33B.1.6380.157895
S936D936NGacAac33C.1.20.012766
S936D936NGacAac33P.1.150.000697
S936D936NGacAac22AE.80.000978
S936D936NGacAac22AY.260.000057
S936D936NGacAac22AY.3.10.000171
S936D936NGacAac22AY.390.000049
S936D936NGacAac22B0.000256
S936D936NGacAac22B.1.1.100.00223
S936D936NGacAac22B.1.1.280.000622
S936D936NGacAac22B.1.1.3510.005587
S936D936NGacAac22B.1.351.10.076923
S936D936NGacAac22B.1.360.000292
S936D936NGacAac22B.1.36.80.002
S936D936NGacAac22B.1.3690.00057
S936D936NGacAac22B.1.5260.000047
S936D936NGacAac22P.1.10.10.01626
S936D936NGacAac22P.1.140.000096
S936D936NGacAac11A.2.50.000499
S936D936NGacAac11AY.1090.00074
S936D936NGacAac11AY.1170.000085
S936D936NGacAac11AY.1200.000037
S936D936NGacAac11AY.29.10.000221
S936D936NGacAac11AY.34.10.00051
S936D936NGacAac11AY.4.2.10.000149
S936D936NGacAac11AY.4.50.000107
S936D936NGacAac11AY.460.000104
S936D936NGacAac11AY.560.001605
S936D936NGacAac11AY.60.000041
S936D936NGacAac11AY.690.000187
S936D936NGacAac11AY.70.000196
S936D936NGacAac11AY.720.001361
S936D936NGacAac11AY.920.000287
S936D936NGacAac11AY.940.000443
S936D936NGacAac11AY.98.10.000048
S936D936NGacAac11B.1.1.1610.003534
S936D936NGacAac11B.1.1.1760.000439
S936D936NGacAac11B.1.1.2070.001182
S936D936NGacAac11B.1.1.2210.010101
S936D936NGacAac11B.1.1.2220.000204
S936D936NGacAac11B.1.1.3060.000438
S936D936NGacAac11B.1.1.3090.005848
S936D936NGacAac11B.1.1.3120.001912
S936D936NGacAac11B.1.1.330.000421
S936D936NGacAac11B.1.1.370.000193
S936D936NGacAac11B.1.1.4070.041667
S936D936NGacAac11B.1.1600.000031
S936D936NGacAac11B.1.160.120.00641
S936D936NGacAac11B.1.177.750.001041
S936D936NGacAac11B.1.2340.000132
S936D936NGacAac11B.1.2390.001221
S936D936NGacAac11B.1.258.170.000104
S936D936NGacAac11B.1.3250.006897
S936D936NGacAac11B.1.36.310.001751
S936D936NGacAac11B.1.4680.005714
S936D936NGacAac11B.1.4700.001404
S936D936NGacAac11B.1.5970.00463
S936D936NGacAac11B.1.6090.000479
S936D936NGacAac11B.1.6210.000089
S936D936NGacAac11B.1.6230.000536
S936D936NGacAac11B.1.6370.000073
S936D936NGacAac11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.