CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D936D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S936D936DsyngaCgaT72187218124368-24370

Details of the mutation D936D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S936D936DgaCgaT72187218All0.001381
S936D936DgaCgaT14621462B.1.1.70.001309
S936D936DgaCgaT796796AY.40.001239
S936D936DgaCgaT551551AY.440.003354
S936D936DgaCgaT502502B.1.438.10.053845
S936D936DgaCgaT361361B.1.617.20.001359
S936D936DgaCgaT341341B.1.20.003003
S936D936DgaCgaT287287AY.1030.001782
S936D936DgaCgaT196196AY.430.000868
S936D936DgaCgaT167167AT.10.85641
S936D936DgaCgaT150150B.1.5260.003526
S936D936DgaCgaT129129B.1.1770.001699
S936D936DgaCgaT111111B.1.2400.023928
S936D936DgaCgaT107107B.1.2580.007121
S936D936DgaCgaT103103B.1.1.5190.00409
S936D936DgaCgaT9595P.10.001497
S936D936DgaCgaT7979AY.250.000475
S936D936DgaCgaT7171AY.30.000706
S936D936DgaCgaT6969B.1.1310.605263
S936D936DgaCgaT6666B.10.000605
S936D936DgaCgaT6666B.1.6210.005842
S936D936DgaCgaT6262AY.1020.001644
S936D936DgaCgaT5757B.1.351.20.017247
S936D936DgaCgaT4646AY.50.00095
S936D936DgaCgaT4040AY.390.000988
S936D936DgaCgaT4040AY.90.002704
S936D936DgaCgaT4040B.1.10.000726
S936D936DgaCgaT4040B.1.177.100.035119
S936D936DgaCgaT3737AY.9.10.003098
S936D936DgaCgaT2525B.1.3510.000743
S936D936DgaCgaT2424B.1.595.20.96
S936D936DgaCgaT2121AY.980.001659
S936D936DgaCgaT2121B.1.1.2530.052632
S936D936DgaCgaT2020B.1.177.570.00562
S936D936DgaCgaT2020B.1.6010.606061
S936D936DgaCgaT1919AY.1010.009318
S936D936DgaCgaT1919AY.1200.000706
S936D936DgaCgaT1919B.1.177.810.003597
S936D936DgaCgaT1818B.1.1600.000561
S936D936DgaCgaT1717A.111
S936D936DgaCgaT1717B.1.177.540.010309
S936D936DgaCgaT1717B.1.4290.0004
S936D936DgaCgaT1616B.1.258.110.006342
S936D936DgaCgaT1616B.1.5950.004175
S936D936DgaCgaT1616B.1.5960.001394
S936D936DgaCgaT1616C.370.001857
S936D936DgaCgaT1515B.1.1.2140.000832
S936D936DgaCgaT1414AY.1000.000644
S936D936DgaCgaT1414AY.470.000435
S936D936DgaCgaT1414AY.750.000784
S936D936DgaCgaT1414B.1.177.860.002568
S936D936DgaCgaT1414P.1.120.006776
S936D936DgaCgaT1313B.1.2430.000905
S936D936DgaCgaT1212AY.1190.000424
S936D936DgaCgaT1212AY.450.00146
S936D936DgaCgaT1212B.1.4270.000606
S936D936DgaCgaT1212Q.30.00174
S936D936DgaCgaT1111AY.200.000428
S936D936DgaCgaT1111AY.4.20.000239
S936D936DgaCgaT1111B.1.258.140.010784
S936D936DgaCgaT1111B.1.5250.001245
S936D936DgaCgaT1010AY.1210.001353
S936D936DgaCgaT1010AY.3.10.000853
S936D936DgaCgaT1010AY.39.10.000396
S936D936DgaCgaT1010B.1.1.3170.004117
S936D936DgaCgaT1010P.1.10.003177
S936D936DgaCgaT99AY.260.000255
S936D936DgaCgaT99AY.610.000943
S936D936DgaCgaT99AY.9.20.000331
S936D936DgaCgaT99B.1.1.1931
S936D936DgaCgaT99B.1.1.3160.008326
S936D936DgaCgaT99B.1.1.330.003788
S936D936DgaCgaT99B.1.6090.004314
S936D936DgaCgaT99P.1.150.002091
S936D936DgaCgaT88AY.1070.003728
S936D936DgaCgaT88P.1.140.000382
S936D936DgaCgaT77AY.1130.000997
S936D936DgaCgaT77AY.1180.000439
S936D936DgaCgaT77AY.290.00011
S936D936DgaCgaT77AY.330.000467
S936D936DgaCgaT77AY.4.40.002864
S936D936DgaCgaT77AY.550.006422
S936D936DgaCgaT77AY.730.004657
S936D936DgaCgaT77AY.99.20.000645
S936D936DgaCgaT77B.1.1.3720.004821
S936D936DgaCgaT77B.1.177.170.005747
S936D936DgaCgaT77B.1.2210.000497
S936D936DgaCgaT66AY.420.000241
S936D936DgaCgaT66AY.460.000624
S936D936DgaCgaT66AY.540.000572
S936D936DgaCgaT66AY.60.000247
S936D936DgaCgaT66AY.70.001176
S936D936DgaCgaT66B.1.1.700.002046
S936D936DgaCgaT66B.1.1060.1875
S936D936DgaCgaT66B.1.36.170.002964
S936D936DgaCgaT66B.1.6370.000438
S936D936DgaCgaT66P.20.00112
S936D936DgaCgaT55AY.1170.000423
S936D936DgaCgaT55AY.340.000485
S936D936DgaCgaT55AY.350.001165
S936D936DgaCgaT55AY.680.001369
S936D936DgaCgaT55B0.000639
S936D936DgaCgaT55B.1.1.2160.004452
S936D936DgaCgaT55B.1.1.390.002548
S936D936DgaCgaT55B.1.177.730.002831
S936D936DgaCgaT55B.1.2320.002687
S936D936DgaCgaT55B.1.2980.010571
S936D936DgaCgaT55B.1.360.00073
S936D936DgaCgaT55P.30.007974
S936D936DgaCgaT55R.10.00045
S936D936DgaCgaT44AY.1100.000451
S936D936DgaCgaT44AY.230.000279
S936D936DgaCgaT44AY.98.10.000194
S936D936DgaCgaT44B.1.1.10.001307
S936D936DgaCgaT44B.1.1.3060.001754
S936D936DgaCgaT44B.1.1.630.001543
S936D936DgaCgaT44B.1.1260.005102
S936D936DgaCgaT44B.1.2410.003247
S936D936DgaCgaT44B.1.258.170.000416
S936D936DgaCgaT44B.1.3960.002823
S936D936DgaCgaT44B.1.5750.001214
S936D936DgaCgaT44C.360.003643
S936D936DgaCgaT33A.2.50.001497
S936D936DgaCgaT33AY.1160.00086
S936D936DgaCgaT33AY.320.001597
S936D936DgaCgaT33AY.4.2.10.000447
S936D936DgaCgaT33AY.4.50.000322
S936D936DgaCgaT33AY.46.60.000217
S936D936DgaCgaT33AY.520.002443
S936D936DgaCgaT33AY.580.002722
S936D936DgaCgaT33AY.740.000347
S936D936DgaCgaT33AY.930.000819
S936D936DgaCgaT33AZ.10.002602
S936D936DgaCgaT33B.1.1.2220.000612
S936D936DgaCgaT33B.1.1.250.001706
S936D936DgaCgaT33B.1.1.2840.000322
S936D936DgaCgaT33B.1.1.4190.022222
S936D936DgaCgaT33B.1.221.30.0025
S936D936DgaCgaT33B.1.3900.031915
S936D936DgaCgaT33B.1.466.20.001174
S936D936DgaCgaT33B.1.6280.001057
S936D936DgaCgaT33C.170.166667
S936D936DgaCgaT22A.10.000564
S936D936DgaCgaT22AD.20.000438
S936D936DgaCgaT22AY.1110.000366
S936D936DgaCgaT22AY.120.20.002571
S936D936DgaCgaT22AY.160.000759
S936D936DgaCgaT22AY.270.000129
S936D936DgaCgaT22AY.280.003781
S936D936DgaCgaT22AY.360.000296
S936D936DgaCgaT22AY.370.000632
S936D936DgaCgaT22AY.46.40.000329
S936D936DgaCgaT22AY.480.00093
S936D936DgaCgaT22AY.590.001059
S936D936DgaCgaT22AY.620.000871
S936D936DgaCgaT22AY.670.000929
S936D936DgaCgaT22AY.7.10.000225
S936D936DgaCgaT22AY.7.20.001119
S936D936DgaCgaT22AY.710.00095
S936D936DgaCgaT22AY.75.10.000361
S936D936DgaCgaT22AY.760.009662
S936D936DgaCgaT22B.1.1.100.00223
S936D936DgaCgaT22B.1.1.2690.002706
S936D936DgaCgaT22B.1.1.3180.000604
S936D936DgaCgaT22B.1.1.3260.003521
S936D936DgaCgaT22B.1.1.370.000386
S936D936DgaCgaT22B.1.177.190.002861
S936D936DgaCgaT22B.1.177.210.000153
S936D936DgaCgaT22B.1.177.40.000422
S936D936DgaCgaT22B.1.2060.001631
S936D936DgaCgaT22B.1.36.220.002415
S936D936DgaCgaT22B.1.3670.001585
S936D936DgaCgaT22B.1.3690.00057
S936D936DgaCgaT22B.1.4260.002018
S936D936DgaCgaT22B.1.4380.013072
S936D936DgaCgaT22B.1.4700.002809
S936D936DgaCgaT22B.1.5640.000852
S936D936DgaCgaT22B.1.5820.000981
S936D936DgaCgaT22B.400.000729
S936D936DgaCgaT22C.330.117647
S936D936DgaCgaT22C.36.30.001134
S936D936DgaCgaT22D.20.00015
S936D936DgaCgaT22Q.80.00033
S936D936DgaCgaT11A0.000387
S936D936DgaCgaT11A.210.00277
S936D936DgaCgaT11AE.80.000489
S936D936DgaCgaT11AY.100.00053
S936D936DgaCgaT11AY.1050.000643
S936D936DgaCgaT11AY.1080.001103
S936D936DgaCgaT11AY.1090.00074
S936D936DgaCgaT11AY.1140.000231
S936D936DgaCgaT11AY.140.000088
S936D936DgaCgaT11AY.29.10.000221
S936D936DgaCgaT11AY.300.000396
S936D936DgaCgaT11AY.39.1.10.000725
S936D936DgaCgaT11AY.39.20.001541
S936D936DgaCgaT11AY.4.10.000737
S936D936DgaCgaT11AY.4.30.000842
S936D936DgaCgaT11AY.410.000294
S936D936DgaCgaT11AY.5.20.002463
S936D936DgaCgaT11AY.570.000656
S936D936DgaCgaT11AY.690.000187
S936D936DgaCgaT11AY.770.001127
S936D936DgaCgaT11AY.790.001211
S936D936DgaCgaT11AY.810.001992
S936D936DgaCgaT11AY.840.000437
S936D936DgaCgaT11AY.870.000833
S936D936DgaCgaT11AY.940.000443
S936D936DgaCgaT11B.1.1.1280.007092
S936D936DgaCgaT11B.1.1.1410.002012
S936D936DgaCgaT11B.1.1.2390.032258
S936D936DgaCgaT11B.1.1.2550.00303
S936D936DgaCgaT11B.1.1.270.00565
S936D936DgaCgaT11B.1.1.2730.006757
S936D936DgaCgaT11B.1.1.2770.000759
S936D936DgaCgaT11B.1.1.2790.001121
S936D936DgaCgaT11B.1.1.280.000311
S936D936DgaCgaT11B.1.1.2910.000742
S936D936DgaCgaT11B.1.1.2980.000862
S936D936DgaCgaT11B.1.1.3110.000358
S936D936DgaCgaT11B.1.1.3350.012987
S936D936DgaCgaT11B.1.1.3640.066667
S936D936DgaCgaT11B.1.1.3700.012658
S936D936DgaCgaT11B.1.1.3740.002375
S936D936DgaCgaT11B.1.1.3850.004464
S936D936DgaCgaT11B.1.1.3880.045455
S936D936DgaCgaT11B.1.1.3970.002252
S936D936DgaCgaT11B.1.1.4090.002833
S936D936DgaCgaT11B.1.1.4160.000905
S936D936DgaCgaT11B.1.1.4200.001006
S936D936DgaCgaT11B.1.1.4340.000349
S936D936DgaCgaT11B.1.1.4620.008621
S936D936DgaCgaT11B.1.1.4640.001473
S936D936DgaCgaT11B.1.1.520.012195
S936D936DgaCgaT11B.1.1.980.018519
S936D936DgaCgaT11B.1.1110.001175
S936D936DgaCgaT11B.1.1280.000635
S936D936DgaCgaT11B.1.1390.000733
S936D936DgaCgaT11B.1.1470.000756
S936D936DgaCgaT11B.1.160.270.015152
S936D936DgaCgaT11B.1.1700.00431
S936D936DgaCgaT11B.1.177.300.002513
S936D936DgaCgaT11B.1.177.440.000519
S936D936DgaCgaT11B.1.177.600.000218
S936D936DgaCgaT11B.1.177.70.000165
S936D936DgaCgaT11B.1.177.80.000752
S936D936DgaCgaT11B.1.177.870.000728
S936D936DgaCgaT11B.1.2100.002132
S936D936DgaCgaT11B.1.214.20.0006
S936D936DgaCgaT11B.1.2150.009615
S936D936DgaCgaT11B.1.2340.000132
S936D936DgaCgaT11B.1.2360.002053
S936D936DgaCgaT11B.1.2370.004975
S936D936DgaCgaT11B.1.2790.000514
S936D936DgaCgaT11B.1.3200.001245
S936D936DgaCgaT11B.1.3490.000715
S936D936DgaCgaT11B.1.351.30.000876
S936D936DgaCgaT11B.1.36.360.000602
S936D936DgaCgaT11B.1.36.80.001
S936D936DgaCgaT11B.1.3990.001934
S936D936DgaCgaT11B.1.4080.00369
S936D936DgaCgaT11B.1.4160.001269
S936D936DgaCgaT11B.1.4220.000812
S936D936DgaCgaT11B.1.4390.005917
S936D936DgaCgaT11B.1.4680.005714
S936D936DgaCgaT11B.1.4800.002488
S936D936DgaCgaT11B.1.4990.00105
S936D936DgaCgaT11B.1.5050.004386
S936D936DgaCgaT11B.1.5650.00081
S936D936DgaCgaT11B.1.5680.001111
S936D936DgaCgaT11B.1.5760.000907
S936D936DgaCgaT11B.1.5770.000687
S936D936DgaCgaT11B.1.6120.002653
S936D936DgaCgaT11B.1.617.10.000129
S936D936DgaCgaT11B.1.6230.000536
S936D936DgaCgaT11B.1.90.006173
S936D936DgaCgaT11B.100.008264
S936D936DgaCgaT11B.390.002331
S936D936DgaCgaT11B.550.00295
S936D936DgaCgaT11B.60.00091
S936D936DgaCgaT11B.6.30.026316
S936D936DgaCgaT11C.350.000774
S936D936DgaCgaT11C.40.01
S936D936DgaCgaT11N.100.029412
S936D936DgaCgaT11N.50.001767
S936D936DgaCgaT11P.1.40.000977
S936D936DgaCgaT11P.1.70.000319
S936D936DgaCgaT11Q.10.000126
S936D936DgaCgaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.