CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 848 | D848D | syn | gaC | gaT | 3252 | 3252 | 1 | 24104-24106 |
Details of the mutation D848D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 848 | D848D | gaC | gaT | 3252 | 3252 | All | 0.000622 |
S | 848 | D848D | gaC | gaT | 1329 | 1329 | B.1.177.16 | 0.883056 |
S | 848 | D848D | gaC | gaT | 316 | 316 | B.1.1.7 | 0.000283 |
S | 848 | D848D | gaC | gaT | 260 | 260 | AY.4 | 0.000405 |
S | 848 | D848D | gaC | gaT | 146 | 146 | AY.3 | 0.001452 |
S | 848 | D848D | gaC | gaT | 128 | 128 | B.1.617.2 | 0.000482 |
S | 848 | D848D | gaC | gaT | 123 | 123 | AY.20 | 0.00478 |
S | 848 | D848D | gaC | gaT | 110 | 110 | B.1.404 | 0.143229 |
S | 848 | D848D | gaC | gaT | 63 | 63 | B.1.1 | 0.001143 |
S | 848 | D848D | gaC | gaT | 57 | 57 | B.1.177.60 | 0.012451 |
S | 848 | D848D | gaC | gaT | 53 | 53 | B.1 | 0.000485 |
S | 848 | D848D | gaC | gaT | 46 | 46 | B.1.433 | 0.146965 |
S | 848 | D848D | gaC | gaT | 38 | 38 | AY.91 | 0.027757 |
S | 848 | D848D | gaC | gaT | 32 | 32 | B.1.177.12 | 0.004854 |
S | 848 | D848D | gaC | gaT | 31 | 31 | B.1.177 | 0.000408 |
S | 848 | D848D | gaC | gaT | 26 | 26 | AY.103 | 0.000161 |
S | 848 | D848D | gaC | gaT | 26 | 26 | B.1.2 | 0.000229 |
S | 848 | D848D | gaC | gaT | 24 | 24 | B.1.221.1 | 0.069767 |
S | 848 | D848D | gaC | gaT | 22 | 22 | B.1.429 | 0.000518 |
S | 848 | D848D | gaC | gaT | 20 | 20 | AY.43 | 0.000089 |
S | 848 | D848D | gaC | gaT | 17 | 17 | B.1.351 | 0.000505 |
S | 848 | D848D | gaC | gaT | 17 | 17 | P.1 | 0.000268 |
S | 848 | D848D | gaC | gaT | 16 | 16 | AY.29 | 0.000252 |
S | 848 | D848D | gaC | gaT | 15 | 15 | AY.25 | 0.00009 |
S | 848 | D848D | gaC | gaT | 14 | 14 | C.37 | 0.001625 |
S | 848 | D848D | gaC | gaT | 13 | 13 | AY.39 | 0.000321 |
S | 848 | D848D | gaC | gaT | 13 | 13 | B.1.243 | 0.000905 |
S | 848 | D848D | gaC | gaT | 13 | 13 | B.1.560 | 0.060185 |
S | 848 | D848D | gaC | gaT | 13 | 13 | R.1 | 0.00117 |
S | 848 | D848D | gaC | gaT | 12 | 12 | AY.44 | 0.000073 |
S | 848 | D848D | gaC | gaT | 12 | 12 | B.1.637 | 0.000877 |
S | 848 | D848D | gaC | gaT | 11 | 11 | AY.26 | 0.000311 |
S | 848 | D848D | gaC | gaT | 10 | 10 | B.1.526 | 0.000235 |
S | 848 | D848D | gaC | gaT | 8 | 8 | AY.16 | 0.003037 |
S | 848 | D848D | gaC | gaT | 8 | 8 | B.1.234 | 0.001056 |
S | 848 | D848D | gaC | gaT | 8 | 8 | B.1.400 | 0.003432 |
S | 848 | D848D | gaC | gaT | 8 | 8 | B.1.619.1 | 0.005131 |
S | 848 | D848D | gaC | gaT | 7 | 7 | AY.102 | 0.000186 |
S | 848 | D848D | gaC | gaT | 7 | 7 | AY.47 | 0.000218 |
S | 848 | D848D | gaC | gaT | 7 | 7 | AY.5 | 0.000145 |
S | 848 | D848D | gaC | gaT | 6 | 6 | AY.33 | 0.000401 |
S | 848 | D848D | gaC | gaT | 5 | 5 | AY.118 | 0.000313 |
S | 848 | D848D | gaC | gaT | 5 | 5 | AY.4.2 | 0.000108 |
S | 848 | D848D | gaC | gaT | 5 | 5 | AY.46.6 | 0.000361 |
S | 848 | D848D | gaC | gaT | 5 | 5 | B.1.1.216 | 0.004452 |
S | 848 | D848D | gaC | gaT | 5 | 5 | P.2 | 0.000933 |
S | 848 | D848D | gaC | gaT | 4 | 4 | AY.99.2 | 0.000369 |
S | 848 | D848D | gaC | gaT | 4 | 4 | B.1.1.261 | 0.034483 |
S | 848 | D848D | gaC | gaT | 4 | 4 | B.1.1.432 | 0.005063 |
S | 848 | D848D | gaC | gaT | 4 | 4 | B.1.247 | 0.059701 |
S | 848 | D848D | gaC | gaT | 3 | 3 | AY.117 | 0.000254 |
S | 848 | D848D | gaC | gaT | 3 | 3 | AY.34 | 0.000291 |
S | 848 | D848D | gaC | gaT | 3 | 3 | AY.6 | 0.000123 |
S | 848 | D848D | gaC | gaT | 3 | 3 | AY.65 | 0.001599 |
S | 848 | D848D | gaC | gaT | 3 | 3 | AY.9.2 | 0.00011 |
S | 848 | D848D | gaC | gaT | 3 | 3 | B.1.1.50 | 0.002037 |
S | 848 | D848D | gaC | gaT | 3 | 3 | B.1.596 | 0.000261 |
S | 848 | D848D | gaC | gaT | 3 | 3 | B.1.621 | 0.000266 |
S | 848 | D848D | gaC | gaT | 3 | 3 | D.2 | 0.000225 |
S | 848 | D848D | gaC | gaT | 2 | 2 | A.1 | 0.000564 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.106 | 0.00067 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.120 | 0.000074 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.23 | 0.000139 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.3.1 | 0.000171 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.36 | 0.000296 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.4.5 | 0.000215 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.75 | 0.000112 |
S | 848 | D848D | gaC | gaT | 2 | 2 | AY.79 | 0.002421 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B | 0.000256 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.1.464 | 0.002946 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.1.95 | 0.039216 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.177.32 | 0.002699 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.177.81 | 0.000379 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.177.9 | 0.002663 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.206 | 0.001631 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.324 | 0.00321 |
S | 848 | D848D | gaC | gaT | 2 | 2 | B.1.411 | 0.007407 |
S | 848 | D848D | gaC | gaT | 1 | 1 | A | 0.000387 |
S | 848 | D848D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.101 | 0.00049 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.2 | 0.000356 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.27 | 0.000065 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.41 | 0.000294 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.5.3 | 0.000337 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.54 | 0.000095 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.55 | 0.000917 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.62 | 0.000436 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.72 | 0.001361 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.9 | 0.000068 |
S | 848 | D848D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.45 | 0.014085 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.46 | 0.004367 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.462 | 0.008621 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.127 | 0.002198 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.42 | 0.000894 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.55 | 0.002331 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.69 | 0.001484 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.77 | 0.000726 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.80 | 0.001912 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.177.87 | 0.000728 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.221 | 0.000071 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.311 | 0.000275 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.346 | 0.001311 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.369 | 0.000285 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.545 | 0.014493 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.595 | 0.000261 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.599 | 0.00365 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 848 | D848D | gaC | gaT | 1 | 1 | B.1.81 | 0.021277 |
S | 848 | D848D | gaC | gaT | 1 | 1 | C.14 | 0.004329 |
S | 848 | D848D | gaC | gaT | 1 | 1 | N.3 | 0.005814 |
S | 848 | D848D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
S | 848 | D848D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
S | 848 | D848D | gaC | gaT | 1 | 1 | P.1.17 | 0.000162 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|