CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 80 | D80Y | nonsyn | Gat | Tat | 12907 | 12897 | 0.999225 | 21800-21802 | |
S | 80 | D80Y | nonsyn | GaT | TaC | 12907 | 10 | 0.000774773 | 21800-21802 |
Details of the mutation D80Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 80 | D80Y | Gat | Tat | 12897 | 12907 | All | 0.002467 |
S | 80 | D80Y | GaT | TaC | 10 | 12907 | All | 0.000002 |
S | 80 | D80Y | Gat | Tat | 2020 | 2020 | AY.103 | 0.012542 |
S | 80 | D80Y | Gat | Tat | 1558 | 1558 | AY.4 | 0.002425 |
S | 80 | D80Y | Gat | Tat | 1124 | 1124 | B.1.367 | 0.89065 |
S | 80 | D80Y | Gat | Tat | 1121 | 1121 | B.1.1.7 | 0.001004 |
S | 80 | D80Y | Gat | Tat | 719 | 719 | B.1.177.9 | 0.95739 |
S | 80 | D80Y | Gat | Tat | 471 | 471 | B.1.617.2 | 0.001774 |
S | 80 | D80Y | Gat | Tat | 422 | 422 | AY.5.4 | 0.116768 |
S | 80 | D80Y | Gat | Tat | 385 | 385 | B.1.177.30 | 0.967337 |
S | 80 | D80Y | Gat | Tat | 363 | 363 | AY.44 | 0.002209 |
S | 80 | D80Y | Gat | Tat | 358 | 358 | B.1.1.417 | 0.967568 |
S | 80 | D80Y | Gat | Tat | 306 | 306 | B.1 | 0.002803 |
S | 80 | D80Y | Gat | Tat | 249 | 250 | B.1.1 | 0.004517 |
S | 80 | D80Y | GaT | TaC | 1 | 250 | B.1.1 | 0.000018 |
S | 80 | D80Y | Gat | Tat | 220 | 220 | AY.43 | 0.000975 |
S | 80 | D80Y | Gat | Tat | 211 | 211 | AY.68 | 0.057761 |
S | 80 | D80Y | Gat | Tat | 209 | 209 | AZ.5 | 0.733333 |
S | 80 | D80Y | Gat | Tat | 208 | 208 | AY.102 | 0.005515 |
S | 80 | D80Y | Gat | Tat | 198 | 198 | B.1.177 | 0.002607 |
S | 80 | D80Y | Gat | Tat | 179 | 179 | B.1.2 | 0.001576 |
S | 80 | D80Y | Gat | Tat | 170 | 170 | B.1.258 | 0.011313 |
S | 80 | D80Y | Gat | Tat | 154 | 154 | B.1.1.519 | 0.006115 |
S | 80 | D80Y | Gat | Tat | 136 | 136 | B.1.429 | 0.0032 |
S | 80 | D80Y | Gat | Tat | 109 | 109 | B.1.1.222 | 0.022236 |
S | 80 | D80Y | Gat | Tat | 109 | 109 | B.1.160 | 0.003399 |
S | 80 | D80Y | Gat | Tat | 92 | 92 | B.1.36.26 | 0.262857 |
S | 80 | D80Y | Gat | Tat | 65 | 65 | D.2 | 0.004878 |
S | 80 | D80Y | Gat | Tat | 60 | 60 | B.1.1.170 | 0.074813 |
S | 80 | D80Y | Gat | Tat | 56 | 56 | B.1.1.214 | 0.003106 |
S | 80 | D80Y | Gat | Tat | 54 | 54 | AY.9 | 0.00365 |
S | 80 | D80Y | Gat | Tat | 53 | 53 | AY.25 | 0.000319 |
S | 80 | D80Y | Gat | Tat | 49 | 49 | B.1.1.28 | 0.015251 |
S | 80 | D80Y | Gat | Tat | 48 | 48 | AY.5.3 | 0.016194 |
S | 80 | D80Y | Gat | Tat | 46 | 46 | AY.46.6 | 0.003322 |
S | 80 | D80Y | Gat | Tat | 40 | 40 | B.1.1.39 | 0.020387 |
S | 80 | D80Y | Gat | Tat | 38 | 38 | B.1.621 | 0.003364 |
S | 80 | D80Y | Gat | Tat | 36 | 36 | AY.98.1 | 0.001744 |
S | 80 | D80Y | Gat | Tat | 35 | 35 | AY.54 | 0.003337 |
S | 80 | D80Y | Gat | Tat | 31 | 31 | AY.9.2 | 0.001139 |
S | 80 | D80Y | Gat | Tat | 31 | 31 | B.1.469 | 0.111913 |
S | 80 | D80Y | Gat | Tat | 28 | 28 | AY.3 | 0.000278 |
S | 80 | D80Y | Gat | Tat | 24 | 24 | AY.20 | 0.000933 |
S | 80 | D80Y | Gat | Tat | 24 | 24 | AY.4.4 | 0.00982 |
S | 80 | D80Y | Gat | Tat | 23 | 23 | AY.39 | 0.000568 |
S | 80 | D80Y | Gat | Tat | 23 | 23 | B.1.470 | 0.032303 |
S | 80 | D80Y | Gat | Tat | 22 | 22 | B.1.1.284 | 0.002363 |
S | 80 | D80Y | Gat | Tat | 22 | 22 | B.1.243 | 0.001531 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | AY.117 | 0.00169 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | AY.29 | 0.000315 |
S | 80 | D80Y | Gat | Tat | 20 | 20 | B.1.36 | 0.002918 |
S | 80 | D80Y | Gat | Tat | 19 | 19 | P.1 | 0.000299 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | B.1.181 | 0.352941 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | B.40 | 0.006557 |
S | 80 | D80Y | Gat | Tat | 18 | 18 | P.2 | 0.003359 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | A.2.5 | 0.008483 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | AY.26 | 0.000481 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | AY.6 | 0.000699 |
S | 80 | D80Y | Gat | Tat | 17 | 17 | B.1.1.174 | 0.057432 |
S | 80 | D80Y | Gat | Tat | 16 | 16 | AY.5 | 0.00033 |
S | 80 | D80Y | Gat | Tat | 16 | 16 | B | 0.002045 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | AY.47 | 0.000467 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.1.398 | 0.048387 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.177.81 | 0.00284 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.565 | 0.012156 |
S | 80 | D80Y | Gat | Tat | 15 | 15 | B.1.596 | 0.001307 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | AY.120 | 0.000521 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | AY.46.4 | 0.002303 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | C.37 | 0.001625 |
S | 80 | D80Y | Gat | Tat | 14 | 14 | R.1 | 0.00126 |
S | 80 | D80Y | Gat | Tat | 13 | 13 | B.1.380 | 0.086093 |
S | 80 | D80Y | Gat | Tat | 12 | 12 | B.1.409 | 0.009375 |
S | 80 | D80Y | Gat | Tat | 12 | 12 | B.1.526 | 0.000282 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | AY.91 | 0.008035 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | AY.92 | 0.00316 |
S | 80 | D80Y | Gat | Tat | 11 | 11 | B.1.221 | 0.000781 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.46 | 0.001041 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.61 | 0.001048 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | AY.77 | 0.011274 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | B.1.1.25 | 0.005685 |
S | 80 | D80Y | Gat | Tat | 10 | 10 | P.1.14 | 0.000478 |
S | 80 | D80Y | Gat | Tat | 9 | 9 | B.1.177.4 | 0.0019 |
S | 80 | D80Y | Gat | Tat | 9 | 9 | B.1.36.18 | 0.003782 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | A.2.5.3 | 0.082474 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.33 | 0.000534 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.4.5 | 0.00086 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | AY.75 | 0.000448 |
S | 80 | D80Y | Gat | Tat | 8 | 8 | B.1.1.50 | 0.005431 |
S | 80 | D80Y | GaT | TaC | 8 | 8 | B.1.438.2 | 0.153846 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.119 | 0.000247 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.120.1 | 0.002247 |
S | 80 | D80Y | Gat | Tat | 6 | 7 | AY.23 | 0.000418 |
S | 80 | D80Y | GaT | TaC | 1 | 7 | AY.23 | 0.00007 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.3.1 | 0.000597 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | AY.98 | 0.000553 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.1.512 | 0.2 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.241 | 0.005682 |
S | 80 | D80Y | Gat | Tat | 7 | 7 | B.1.36.29 | 0.003621 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.100 | 0.000276 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.34.1 | 0.00306 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.45 | 0.00073 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | AY.9.1 | 0.000502 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.1.487 | 0.03352 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.111 | 0.007051 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.234 | 0.000792 |
S | 80 | D80Y | Gat | Tat | 6 | 6 | B.1.466 | 0.139535 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | A.30 | 0.714286 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.106 | 0.001674 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.118 | 0.000313 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.4.2 | 0.000108 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | AY.64 | 0.002976 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.1 | 0.001633 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.216 | 0.004452 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.1.306 | 0.002192 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.105 | 0.048077 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.177.45 | 0.001906 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.466.2 | 0.001956 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.595 | 0.001305 |
S | 80 | D80Y | Gat | Tat | 5 | 5 | B.1.627 | 0.010101 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.37 | 0.001264 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.42 | 0.000161 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.55 | 0.00367 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | AY.84 | 0.00175 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.33 | 0.001684 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.37 | 0.000771 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.1.462 | 0.034483 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | B.1.427 | 0.000202 |
S | 80 | D80Y | Gat | Tat | 4 | 4 | P.1.17 | 0.000647 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AD.2 | 0.000657 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.101 | 0.001471 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.116 | 0.00086 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.34 | 0.000291 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.38 | 0.001498 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.46.2 | 0.001906 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.65 | 0.001599 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | AY.70 | 0.000626 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.1.241 | 0.006211 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.1.506 | 0.111111 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.22 | 0.003953 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.1 | 0.003421 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.10 | 0.014354 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.36.17 | 0.001482 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.369 | 0.000856 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.575 | 0.00091 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | B.1.617.1 | 0.000387 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | P.1.15 | 0.000697 |
S | 80 | D80Y | Gat | Tat | 3 | 3 | Q.8 | 0.000495 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | A.1 | 0.000564 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.1 | 0.000791 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.19 | 0.002281 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.27 | 0.000129 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.40 | 0.001929 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.48 | 0.00093 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.7.2 | 0.001119 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.78 | 0.003082 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | AY.99.2 | 0.000184 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.10 | 0.00223 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.101 | 0.02 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.198 | 0.002937 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.207 | 0.002364 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.219 | 0.01 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.312 | 0.003824 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.316 | 0.00185 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.318 | 0.000604 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.344 | 0.021505 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.348 | 0.001592 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.349 | 0.020619 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.412 | 0.015267 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.1.70 | 0.000682 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.33 | 0.003289 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.56 | 0.001335 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.177.83 | 0.002963 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.260 | 0.006689 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.428 | 0.002041 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.560 | 0.009259 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.588.1 | 0.076923 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.609 | 0.000959 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | B.1.628 | 0.000705 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.16 | 0.002121 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.36 | 0.001821 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | C.36.3 | 0.001134 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | N.5 | 0.003534 |
S | 80 | D80Y | Gat | Tat | 2 | 2 | P.1.7 | 0.000639 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A | 0.000387 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.11 | 0.058824 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.2.5.2 | 0.001572 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | A.28 | 0.002646 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.107 | 0.000466 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.108 | 0.001103 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.11 | 0.001339 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.110 | 0.000113 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.14 | 0.000088 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.15 | 0.002222 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.2 | 0.000356 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.28 | 0.00189 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.30 | 0.000396 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.32 | 0.000532 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.36 | 0.000148 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.39.1 | 0.00004 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.41 | 0.000294 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.46.1 | 0.001027 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.53 | 0.000288 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.59 | 0.00053 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.67 | 0.000464 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.72 | 0.001361 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.76 | 0.004831 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.8 | 0.000606 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.85 | 0.000427 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.86 | 0.00083 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.87 | 0.000833 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | AY.88 | 0.000884 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.117 | 0.009709 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.135 | 0.004695 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.141 | 0.002012 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.161 | 0.003534 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.171 | 0.003676 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.192 | 0.002309 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.277 | 0.000759 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.282 | 0.011628 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.301 | 0.001179 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.329 | 0.003846 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.372 | 0.000689 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.389 | 0.006061 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.404 | 0.015873 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.409 | 0.002833 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.413 | 0.006897 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.416 | 0.000905 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.420 | 0.001006 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.432 | 0.001266 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.434 | 0.000349 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.52 | 0.012195 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.63 | 0.000386 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.1.99 | 0.02381 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.12 | 0.008 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.139 | 0.000733 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.140 | 0.018868 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.142 | 0.002899 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.157 | 0.002985 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.169 | 0.014925 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.15 | 0.000631 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.24 | 0.001295 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.31 | 0.011494 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.40 | 0.005155 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.42 | 0.000894 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.55 | 0.002331 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.6 | 0.000977 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.73 | 0.000566 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.182 | 0.007246 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.222 | 0.001692 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.231 | 0.032258 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.236 | 0.002053 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.320 | 0.001245 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.323 | 0.020833 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.340 | 0.004292 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.36.22 | 0.001208 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.36.8 | 0.001 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.370 | 0.008 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.378 | 0.006849 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.381 | 0.007812 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.387 | 0.04 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.40 | 0.019608 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.401 | 0.008197 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.402 | 0.009804 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.411 | 0.003704 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.422 | 0.000812 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.425 | 0.002994 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.438 | 0.006536 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.456 | 0.003268 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.471 | 0.002732 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.474 | 0.001901 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.524 | 0.001406 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.525 | 0.000113 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.576 | 0.000907 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.580 | 0.004065 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.588 | 0.00091 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.612 | 0.002653 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.620 | 0.000946 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.621.1 | 0.000506 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.630 | 0.005236 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.1.9 | 0.006173 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.3.1 | 0.001658 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.52 | 0.010101 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | B.6 | 0.00091 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.1 | 0.002392 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.18 | 0.002591 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | C.37.1 | 0.002618 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | N.9 | 0.005952 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.10.1 | 0.00813 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.13 | 0.000898 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.1.6 | 0.001946 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | P.7 | 0.004367 |
S | 80 | D80Y | Gat | Tat | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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