CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D215G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S215D215GnonsyngAtgGt40238402340.99990122205-22207
S215D215GnonsyngATgGC4023830.000074556422205-22207
S215D215GnonsyngATgGA4023810.000024852122205-22207

Details of the mutation D215G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S215D215GgAtgGt4023440238All0.007695
S215D215GgATgGC340238All0.000001
S215D215GgATgGA140238All0
S215D215GgAtgGt3198231982B.1.3510.950713
S215D215GgAtgGt32773277B.1.351.20.991528
S215D215GgAtgGt16591659B.1.351.50.994604
S215D215GgAtgGt11261126B.1.351.30.986854
S215D215GgAtgGt360360B.1.1.70.000322
S215D215GgAtgGt235235B.10.002152
S215D215GgAtgGt226226C.1.20.961702
S215D215GgAtgGt137137AT.10.702564
S215D215GgAtgGt120120AY.440.00073
S215D215GgAtgGt5555B.1.10.000998
S215D215GgAtgGt5050B.1.1.700.017053
S215D215GgAtgGt5050B.1.220.065876
S215D215GgAtgGt4949B.1.617.20.000185
S215D215GgAtgGt4646AY.40.000072
S215D215GgAtgGt4141B.1.258.30.068677
S215D215GgAtgGt3737B.1.6160.902439
S215D215GgAtgGt3535B.1.4290.000824
S215D215GgAtgGt3333AY.250.000198
S215D215GgAtgGt3030AY.1030.000186
S215D215GgAtgGt3030C.36.3.10.081522
S215D215GgAtgGt2828P.30.044657
S215D215GgAtgGt2626AY.1140.006009
S215D215GgAtgGt2525B.1.351.10.961538
S215D215GgAtgGt2222P.10.000347
S215D215GgAtgGt2121B.1.20.000185
S215D215GgAtgGt1818AY.200.0007
S215D215GgAtgGt1717B.1.5240.02391
S215D215GgAtgGt1717B.1.6200.016083
S215D215GgAtgGt1616AY.430.000071
S215D215GgAtgGt1616B.1.214.20.009592
S215D215GgAtgGt1515B.1.5260.000353
S215D215GgAtgGt1515B.1.5540.066079
S215D215GgAtgGt1414C.370.001625
S215D215GgAtgGt1313B.1.1.5190.000516
S215D215GgAtgGt1313B.1.4270.000656
S215D215GgAtgGt1111B0.001406
S215D215GgAtgGt1111B.1.1110.012926
S215D215GgAtgGt1010AY.390.000247
S215D215GgAtgGt99AY.1020.000239
S215D215GgAtgGt99AY.1210.001218
S215D215GgAtgGt99AY.290.000142
S215D215GgAtgGt99AY.30.00009
S215D215GgAtgGt99B.1.177.730.005096
S215D215GgAtgGt88AY.750.000448
S215D215GgAtgGt88B.1.617.10.001032
S215D215GgAtgGt77AY.420.000282
S215D215GgAtgGt77AY.450.000852
S215D215GgAtgGt77AY.560.011236
S215D215GgAtgGt77AY.75.10.001262
S215D215GgAtgGt77B.1.1600.000218
S215D215GgAtgGt66A.210.01662
S215D215GgAtgGt66AY.4.20.00013
S215D215GgAtgGt66AY.9.20.00022
S215D215GgAtgGt66B.1.1.280.001867
S215D215GgAtgGt55A0.001935
S215D215GgAtgGt55A.300.714286
S215D215GgAtgGt55AY.1000.00023
S215D215GgAtgGt55AY.1160.001434
S215D215GgAtgGt45AY.260.000113
S215D215GgATgGC15AY.260.000028
S215D215GgAtgGt55AY.360.000741
S215D215GgAtgGt55AY.880.004421
S215D215GgAtgGt55P.50.068493
S215D215GgAtgGt44AY.1130.00057
S215D215GgAtgGt44AY.1200.000149
S215D215GgAtgGt44AY.590.002119
S215D215GgAtgGt44AY.70.000784
S215D215GgAtgGt44B.1.1.4320.005063
S215D215GgAtgGt44B.1.1770.000053
S215D215GgAtgGt44B.1.2580.000266
S215D215GgAtgGt44B.1.5950.001044
S215D215GgAtgGt34B.1.6210.000266
S215D215GgATgGA14B.1.6210.000089
S215D215GgAtgGt33A.10.000846
S215D215GgAtgGt33A.290.015957
S215D215GgAtgGt33AY.10.001187
S215D215GgAtgGt33AY.1050.001929
S215D215GgAtgGt33AY.1180.000188
S215D215GgAtgGt33AY.50.000062
S215D215GgAtgGt33B.1.1.330.001263
S215D215GgAtgGt33B.1.1.3720.002066
S215D215GgAtgGt33B.1.1.3890.018182
S215D215GgAtgGt33B.1.1.5070.026087
S215D215GgAtgGt33B.1.1700.012931
S215D215GgAtgGt33B.1.2210.000213
S215D215GgAtgGt33C.36.30.001702
S215D215GgAtgGt33Q.80.000495
S215D215GgATgGC22A.2.50.000998
S215D215GgAtgGt22A.270.003311
S215D215GgAtgGt22AY.1150.010417
S215D215GgAtgGt22AY.230.000139
S215D215GgAtgGt22AY.270.000129
S215D215GgAtgGt22AY.3.10.000171
S215D215GgAtgGt22AY.320.001065
S215D215GgAtgGt22AY.340.000194
S215D215GgAtgGt22AY.400.001929
S215D215GgAtgGt22AY.46.50.000397
S215D215GgAtgGt22AY.530.000575
S215D215GgAtgGt22AY.60.000082
S215D215GgAtgGt22AY.680.000547
S215D215GgAtgGt22AY.710.00095
S215D215GgAtgGt22AY.840.000875
S215D215GgAtgGt22AY.960.004149
S215D215GgAtgGt22B.1.1.10.000653
S215D215GgAtgGt22B.1.110.30.001437
S215D215GgAtgGt22B.1.177.310.022989
S215D215GgAtgGt22B.1.360.000292
S215D215GgAtgGt22B.1.3750.001639
S215D215GgAtgGt22B.1.6090.000959
S215D215GgAtgGt22B.1.6360.013423
S215D215GgAtgGt22B.60.00182
S215D215GgAtgGt22C.10.004785
S215D215GgAtgGt11A.2.40.003367
S215D215GgAtgGt11AA.10.007246
S215D215GgAtgGt11AY.1010.00049
S215D215GgAtgGt11AY.1060.000335
S215D215GgAtgGt11AY.1070.000466
S215D215GgAtgGt11AY.1170.000085
S215D215GgAtgGt11AY.1190.000035
S215D215GgAtgGt11AY.140.000088
S215D215GgAtgGt11AY.29.10.000221
S215D215GgAtgGt11AY.330.000067
S215D215GgAtgGt11AY.34.10.00051
S215D215GgAtgGt11AY.380.000499
S215D215GgAtgGt11AY.4.40.000409
S215D215GgAtgGt11AY.4.50.000107
S215D215GgAtgGt11AY.460.000104
S215D215GgAtgGt11AY.46.60.000072
S215D215GgAtgGt11AY.470.000031
S215D215GgAtgGt11AY.540.000095
S215D215GgAtgGt11AY.610.000105
S215D215GgAtgGt11AY.670.000464
S215D215GgAtgGt11AY.740.000116
S215D215GgAtgGt11AY.9.10.000084
S215D215GgAtgGt11AY.950.000761
S215D215GgAtgGt11AY.980.000079
S215D215GgAtgGt11AY.98.10.000048
S215D215GgAtgGt11B.1.1.2140.000055
S215D215GgAtgGt11B.1.1.2160.00089
S215D215GgAtgGt11B.1.1.3060.000438
S215D215GgAtgGt11B.1.1.3180.000302
S215D215GgAtgGt11B.1.1.3750.011905
S215D215GgAtgGt11B.1.1.500.000679
S215D215GgAtgGt11B.1.1.5210.005348
S215D215GgAtgGt11B.1.1.5260.003546
S215D215GgAtgGt11B.1.1570.002985
S215D215GgAtgGt11B.1.177.70.000165
S215D215GgAtgGt11B.1.1890.004292
S215D215GgAtgGt11B.1.2140.003663
S215D215GgAtgGt11B.1.214.30.007143
S215D215GgAtgGt11B.1.221.10.002907
S215D215GgAtgGt11B.1.2340.000132
S215D215GgAtgGt11B.1.2350.002519
S215D215GgAtgGt11B.1.2370.004975
S215D215GgAtgGt11B.1.2430.00007
S215D215GgAtgGt11B.1.258.170.000104
S215D215GgAtgGt11B.1.3360.002439
S215D215GgAtgGt11B.1.3430.020833
S215D215GgAtgGt11B.1.36.310.001751
S215D215GgAtgGt11B.1.36.80.001
S215D215GgAtgGt11B.1.3620.001541
S215D215GgAtgGt11B.1.3670.000792
S215D215GgAtgGt11B.1.3780.006849
S215D215GgAtgGt11B.1.3990.001934
S215D215GgAtgGt11B.1.4590.004082
S215D215GgAtgGt11B.1.4700.001404
S215D215GgAtgGt11B.1.5090.000866
S215D215GgAtgGt11B.1.5760.000907
S215D215GgAtgGt11B.1.621.10.000506
S215D215GgAtgGt11B.6.30.026316
S215D215GgAtgGt11C.1.10.076923
S215D215GgAtgGt11C.350.000774
S215D215GgAtgGt11D.20.000075
S215D215GgAtgGt11N.50.001767
S215D215GgAtgGt11P.1.20.001156
S215D215GgAtgGt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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