CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D178N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S178D178NnonsynGacAac31883188122094-22096

Details of the mutation D178N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S178D178NGacAac31883188All0.00061
S178D178NGacAac12701270AY.920.364838
S178D178NGacAac386386B.1.20.003399
S178D178NGacAac291291B.1.1.70.000261
S178D178NGacAac227227AY.40.000353
S178D178NGacAac152152AY.250.000914
S178D178NGacAac117117B.1.617.20.000441
S178D178NGacAac8787AY.1030.00054
S178D178NGacAac4848AY.290.000757
S178D178NGacAac4141B.10.000376
S178D178NGacAac3838B.1.2390.046398
S178D178NGacAac3434AY.1200.001264
S178D178NGacAac3131AY.1020.000822
S178D178NGacAac3131AY.440.000189
S178D178NGacAac2828B.1.1.3700.35443
S178D178NGacAac2626B.1.10.000472
S178D178NGacAac2121A.23.10.014789
S178D178NGacAac2020AY.470.000622
S178D178NGacAac1717AY.430.000075
S178D178NGacAac1717B.1.1.3411
S178D178NGacAac1616B.1.3960.011291
S178D178NGacAac1111AY.420.000443
S178D178NGacAac1111B.1.360.001605
S178D178NGacAac1111B.1.5880.010009
S178D178NGacAac1010AY.50.000206
S178D178NGacAac99AY.330.000601
S178D178NGacAac88B.1.1770.000105
S178D178NGacAac88B.1.5260.000188
S178D178NGacAac77B.1.1.3970.015766
S178D178NGacAac77B.1.4290.000165
S178D178NGacAac77P.10.00011
S178D178NGacAac66AY.390.000148
S178D178NGacAac66B.1.3510.000178
S178D178NGacAac55AY.30.00005
S178D178NGacAac55AY.450.000608
S178D178NGacAac55AY.750.00028
S178D178NGacAac55AY.90.000338
S178D178NGacAac55B.1.1.10.001633
S178D178NGacAac55B.1.2100.010661
S178D178NGacAac55B.1.4010.040984
S178D178NGacAac44AY.1130.00057
S178D178NGacAac44B.1.5960.000349
S178D178NGacAac44B.1.6210.000354
S178D178NGacAac33A0.001161
S178D178NGacAac33AY.1050.001929
S178D178NGacAac33AY.1180.000188
S178D178NGacAac33AY.260.000085
S178D178NGacAac33B.1.1.5190.000119
S178D178NGacAac33B.1.1110.003525
S178D178NGacAac33B.1.1600.000094
S178D178NGacAac33B.1.3380.025862
S178D178NGacAac33B.1.4330.009585
S178D178NGacAac33B.400.001093
S178D178NGacAac33C.370.000348
S178D178NGacAac33P.1.10.000953
S178D178NGacAac22AU.20.004843
S178D178NGacAac22AY.1000.000092
S178D178NGacAac22AY.1010.000981
S178D178NGacAac22AY.1190.000071
S178D178NGacAac22AY.230.000139
S178D178NGacAac22AY.270.000129
S178D178NGacAac22AY.3.10.000171
S178D178NGacAac22AY.4.20.000043
S178D178NGacAac22AY.60.000082
S178D178NGacAac22AY.850.000854
S178D178NGacAac22AY.9.20.000073
S178D178NGacAac22AY.900.001369
S178D178NGacAac22B0.000256
S178D178NGacAac22B.1.1.2400.00939
S178D178NGacAac22B.1.1.280.000622
S178D178NGacAac22B.1.1.2980.001724
S178D178NGacAac22B.1.2430.000139
S178D178NGacAac22B.1.36.160.002849
S178D178NGacAac22B.1.36.170.000988
S178D178NGacAac22B.1.36.190.018519
S178D178NGacAac22B.1.36.80.002
S178D178NGacAac22B.1.5800.00813
S178D178NGacAac22B.1.90.012346
S178D178NGacAac11A.2.5.10.004808
S178D178NGacAac11AY.100.00053
S178D178NGacAac11AY.120.10.000321
S178D178NGacAac11AY.140.000088
S178D178NGacAac11AY.160.00038
S178D178NGacAac11AY.190.00114
S178D178NGacAac11AY.200.000039
S178D178NGacAac11AY.320.000532
S178D178NGacAac11AY.4.2.10.000149
S178D178NGacAac11AY.4.50.000107
S178D178NGacAac11AY.410.000294
S178D178NGacAac11AY.46.50.000198
S178D178NGacAac11AY.530.000288
S178D178NGacAac11AY.600.000938
S178D178NGacAac11AY.620.000436
S178D178NGacAac11AY.70.000196
S178D178NGacAac11AY.740.000116
S178D178NGacAac11AY.80.000606
S178D178NGacAac11AY.950.000761
S178D178NGacAac11AY.980.000079
S178D178NGacAac11AY.98.10.000048
S178D178NGacAac11AY.99.20.000092
S178D178NGacAac11B.1.1.1920.002309
S178D178NGacAac11B.1.1.2160.00089
S178D178NGacAac11B.1.1.2220.000204
S178D178NGacAac11B.1.1.2370.005405
S178D178NGacAac11B.1.1.2690.001353
S178D178NGacAac11B.1.1.3060.000438
S178D178NGacAac11B.1.1.3170.000412
S178D178NGacAac11B.1.1.3180.000302
S178D178NGacAac11B.1.1.390.00051
S178D178NGacAac11B.1.1.4160.000905
S178D178NGacAac11B.1.1.430.014925
S178D178NGacAac11B.1.1.4580.041667
S178D178NGacAac11B.1.1.460.004367
S178D178NGacAac11B.1.1.4870.005587
S178D178NGacAac11B.1.1.540.003021
S178D178NGacAac11B.1.1390.000733
S178D178NGacAac11B.1.177.570.000281
S178D178NGacAac11B.1.177.70.000165
S178D178NGacAac11B.1.177.870.000728
S178D178NGacAac11B.1.2600.003344
S178D178NGacAac11B.1.3110.000275
S178D178NGacAac11B.1.3190.003049
S178D178NGacAac11B.1.3460.001311
S178D178NGacAac11B.1.36.100.004785
S178D178NGacAac11B.1.36.180.00042
S178D178NGacAac11B.1.3690.000285
S178D178NGacAac11B.1.4090.000781
S178D178NGacAac11B.1.4270.00005
S178D178NGacAac11B.1.4700.001404
S178D178NGacAac11B.1.5250.000113
S178D178NGacAac11B.1.5500.013699
S178D178NGacAac11B.40.002208
S178D178NGacAac11B.6.60.000889
S178D178NGacAac11N.30.005814
S178D178NGacAac11P.1.150.000232
S178D178NGacAac11P.1.70.000319
S178D178NGacAac11P.20.000187
S178D178NGacAac11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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