CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D1260Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1260D1260YnonsynGacTac226522640.99955925340-25342
S1260D1260YnonsynGaCTaT226510.00044150125340-25342

Details of the mutation D1260Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1260D1260YGacTac22642265All0.000433
S1260D1260YGaCTaT12265All0
S1260D1260YGacTac548548AY.40.000853
S1260D1260YGacTac482482AY.810.960159
S1260D1260YGacTac209209B.1.1.70.000187
S1260D1260YGacTac7979B.10.000724
S1260D1260YGacTac7979B.1.360.011526
S1260D1260YGacTac7272B.1.1600.002246
S1260D1260YGacTac6868B.1.160.200.607143
S1260D1260YGacTac4848B.1.617.20.000181
S1260D1260YGacTac4747B.1.3510.001397
S1260D1260YGacTac3737AY.440.000225
S1260D1260YGacTac3434AY.30.000338
S1260D1260YGacTac3030B.1.20.000264
S1260D1260YGacTac2727B.1.1.2140.001497
S1260D1260YGacTac2323AY.430.000102
S1260D1260YGacTac2121AY.1030.00013
S1260D1260YGacTac2020B.1.10.000363
S1260D1260YGacTac1919AY.290.0003
S1260D1260YGacTac1919AY.750.001064
S1260D1260YGacTac1919B.1.2060.015498
S1260D1260YGacTac1919P.1.140.000908
S1260D1260YGacTac1717B.1.1.570.195402
S1260D1260YGacTac1616AY.4.20.000347
S1260D1260YGacTac1616B.1.1770.000211
S1260D1260YGacTac1313B.1.3690.003708
S1260D1260YGacTac1313B.1.4270.000656
S1260D1260YGacTac1212AY.250.000072
S1260D1260YGacTac1111P.10.000173
S1260D1260YGacTac1010B.1.1.2440.153846
S1260D1260YGacTac1010B.1.1.5190.000397
S1260D1260YGacTac99AM.21
S1260D1260YGacTac88AY.46.60.000578
S1260D1260YGacTac66AY.1020.000159
S1260D1260YGacTac66AY.470.000187
S1260D1260YGacTac66AY.9.20.00022
S1260D1260YGacTac66B.1.2580.000399
S1260D1260YGacTac66B.1.4700.008427
S1260D1260YGacTac66P.1.70.001916
S1260D1260YGacTac55AY.330.000334
S1260D1260YGacTac55B.1.1.4320.006329
S1260D1260YGacTac55B.1.36.290.002587
S1260D1260YGacTac55B.1.3970.024272
S1260D1260YGacTac55B.1.617.10.000645
S1260D1260YGacTac44AY.1000.000184
S1260D1260YGacTac44AY.1170.000338
S1260D1260YGacTac44AY.340.000388
S1260D1260YGacTac44AY.450.000487
S1260D1260YGacTac44AY.50.000083
S1260D1260YGacTac44B0.000511
S1260D1260YGacTac44B.1.1.280.001245
S1260D1260YGacTac44B.1.1.370.000771
S1260D1260YGacTac44B.1.416.10.00625
S1260D1260YGacTac44B.1.621.10.002023
S1260D1260YGacTac44B.1.6230.002146
S1260D1260YGacTac33AY.16.10.00141
S1260D1260YGacTac33AY.29.10.000662
S1260D1260YGacTac33AY.390.000074
S1260D1260YGacTac33B.1.1.2840.000322
S1260D1260YGacTac33B.1.2210.000213
S1260D1260YGacTac33B.1.4970.000944
S1260D1260YGacTac33B.1.6210.000266
S1260D1260YGacTac33C.370.000348
S1260D1260YGacTac33P.20.00056
S1260D1260YGacTac22AY.120.000632
S1260D1260YGacTac22AY.1200.000074
S1260D1260YGacTac22AY.140.000176
S1260D1260YGacTac22AY.240.000862
S1260D1260YGacTac22AY.260.000057
S1260D1260YGacTac22AY.360.000296
S1260D1260YGacTac22AY.4.50.000215
S1260D1260YGacTac22AY.420.00008
S1260D1260YGacTac12AY.46.20.000635
S1260D1260YGaCTaT12AY.46.20.000635
S1260D1260YGacTac22AY.740.000231
S1260D1260YGacTac22AY.980.000158
S1260D1260YGacTac22AY.99.20.000184
S1260D1260YGacTac22B.1.1.3060.000877
S1260D1260YGacTac22B.1.177.350.001382
S1260D1260YGacTac22B.1.258.170.000208
S1260D1260YGacTac22B.1.5600.009259
S1260D1260YGacTac22B.1.5610.000794
S1260D1260YGacTac22B.1.6360.013423
S1260D1260YGacTac22D.20.00015
S1260D1260YGacTac11A0.000387
S1260D1260YGacTac11AY.1010.00049
S1260D1260YGacTac11AY.1190.000035
S1260D1260YGacTac11AY.120.10.000321
S1260D1260YGacTac11AY.1210.000135
S1260D1260YGacTac11AY.270.000065
S1260D1260YGacTac11AY.39.10.00004
S1260D1260YGacTac11AY.480.000465
S1260D1260YGacTac11AY.5.30.000337
S1260D1260YGacTac11AY.530.000288
S1260D1260YGacTac11AY.660.00107
S1260D1260YGacTac11AY.70.000196
S1260D1260YGacTac11AY.700.000209
S1260D1260YGacTac11AY.710.000475
S1260D1260YGacTac11AY.770.001127
S1260D1260YGacTac11AY.860.00083
S1260D1260YGacTac11AY.950.000761
S1260D1260YGacTac11AZ.10.000867
S1260D1260YGacTac11B.1.1.10.000327
S1260D1260YGacTac11B.1.1.1530.001095
S1260D1260YGacTac11B.1.1.2160.00089
S1260D1260YGacTac11B.1.1.2980.000862
S1260D1260YGacTac11B.1.1.3470.018182
S1260D1260YGacTac11B.1.1.390.00051
S1260D1260YGacTac11B.1.1.540.003021
S1260D1260YGacTac11B.1.1.630.000386
S1260D1260YGacTac11B.1.1.910.166667
S1260D1260YGacTac11B.1.177.40.000211
S1260D1260YGacTac11B.1.177.810.000189
S1260D1260YGacTac11B.1.177.860.000183
S1260D1260YGacTac11B.1.2340.000132
S1260D1260YGacTac11B.1.2430.00007
S1260D1260YGacTac11B.1.3010.005917
S1260D1260YGacTac11B.1.351.20.000303
S1260D1260YGacTac11B.1.351.30.000876
S1260D1260YGacTac11B.1.3560.001727
S1260D1260YGacTac11B.1.36.10.00114
S1260D1260YGacTac11B.1.36.330.007576
S1260D1260YGacTac11B.1.36.70.004
S1260D1260YGacTac11B.1.4000.000429
S1260D1260YGacTac11B.1.4160.001269
S1260D1260YGacTac11B.1.4290.000024
S1260D1260YGacTac11B.1.4730.019231
S1260D1260YGacTac11B.1.5250.000113
S1260D1260YGacTac11B.1.5260.000024
S1260D1260YGacTac11B.1.5440.006024
S1260D1260YGacTac11B.1.5640.000426
S1260D1260YGacTac11B.1.5670.003333
S1260D1260YGacTac11B.1.5760.000907
S1260D1260YGacTac11B.1.5870.001898
S1260D1260YGacTac11B.1.5950.000261
S1260D1260YGacTac11B.1.5960.000087
S1260D1260YGacTac11B.1.6090.000479
S1260D1260YGacTac11C.140.004329
S1260D1260YGacTac11P.1.100.000269
S1260D1260YGacTac11P.1.150.000232
S1260D1260YGacTac11P.1.20.001156
S1260D1260YGacTac11Q.20.000613
S1260D1260YGacTac11Q.30.000145
S1260D1260YGacTac11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.