CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = D1118Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1118D1118YnonsynGacTac45234523124914-24916

Details of the mutation D1118Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1118D1118YGacTac45234523All0.000865
S1118D1118YGacTac28082808B.1.1.70.002514
S1118D1118YGacTac261261B.1.2580.017369
S1118D1118YGacTac179179AY.116.10.055746
S1118D1118YGacTac127127B.1.617.20.000478
S1118D1118YGacTac8686AY.470.002675
S1118D1118YGacTac8282B.1.1.3290.315385
S1118D1118YGacTac6565B.1.20.000572
S1118D1118YGacTac6161Q.80.010059
S1118D1118YGacTac5555AY.50.001136
S1118D1118YGacTac5454AY.40.000084
S1118D1118YGacTac4949B.1.1.5190.001946
S1118D1118YGacTac4747B.10.00043
S1118D1118YGacTac3737AY.440.000225
S1118D1118YGacTac3737B.1.3670.029319
S1118D1118YGacTac2828AY.330.00187
S1118D1118YGacTac2828AY.430.000124
S1118D1118YGacTac2626AY.980.002054
S1118D1118YGacTac2525B.1.1.630.009645
S1118D1118YGacTac2424AY.1030.000149
S1118D1118YGacTac2222AY.700.004587
S1118D1118YGacTac2222B.1.10.000399
S1118D1118YGacTac1717AY.1190.0006
S1118D1118YGacTac1717B.1.1.10.005554
S1118D1118YGacTac1717B.1.2650.021601
S1118D1118YGacTac1616P.20.002986
S1118D1118YGacTac1515B.1.1770.000198
S1118D1118YGacTac1414AY.1210.001894
S1118D1118YGacTac1414B.1.2210.000994
S1118D1118YGacTac1313B.1.4290.000306
S1118D1118YGacTac1111AY.1020.000292
S1118D1118YGacTac1010AY.750.00056
S1118D1118YGacTac99AY.250.000054
S1118D1118YGacTac99AY.540.000858
S1118D1118YGacTac88B.1.5250.000905
S1118D1118YGacTac88Q.10.001011
S1118D1118YGacTac77B.1.6020.045752
S1118D1118YGacTac66AY.120.10.001926
S1118D1118YGacTac66AY.200.000233
S1118D1118YGacTac66AY.290.000095
S1118D1118YGacTac66AY.390.000148
S1118D1118YGacTac66B.1.1.2220.001224
S1118D1118YGacTac66B.1.1.250.003411
S1118D1118YGacTac66B.1.1.280.001867
S1118D1118YGacTac66B.1.1.3690.002677
S1118D1118YGacTac66B.1.1.4320.007595
S1118D1118YGacTac66B.1.2320.003224
S1118D1118YGacTac55AY.30.00005
S1118D1118YGacTac55AY.420.000201
S1118D1118YGacTac44AY.1000.000184
S1118D1118YGacTac44B.1.177.460.003673
S1118D1118YGacTac44B.1.2430.000278
S1118D1118YGacTac44P.10.000063
S1118D1118YGacTac33AY.1060.001005
S1118D1118YGacTac33AY.1170.000254
S1118D1118YGacTac33AY.450.000365
S1118D1118YGacTac33AY.690.00056
S1118D1118YGacTac33AY.740.000347
S1118D1118YGacTac33B.1.1.1760.001318
S1118D1118YGacTac33B.1.1.2340.036145
S1118D1118YGacTac33B.1.2450.09375
S1118D1118YGacTac33B.1.3510.000089
S1118D1118YGacTac33B.1.360.000438
S1118D1118YGacTac33B.1.4270.000151
S1118D1118YGacTac33B.1.5960.000261
S1118D1118YGacTac22A0.000774
S1118D1118YGacTac22A.2.5.10.009615
S1118D1118YGacTac22AY.1160.000574
S1118D1118YGacTac22AY.1200.000074
S1118D1118YGacTac22AY.3.10.000171
S1118D1118YGacTac22AY.860.00166
S1118D1118YGacTac22AY.9.10.000167
S1118D1118YGacTac22B.1.1.540.006042
S1118D1118YGacTac22B.1.1110.00235
S1118D1118YGacTac22B.1.351.50.001199
S1118D1118YGacTac22B.1.36.80.002
S1118D1118YGacTac22B.1.3690.00057
S1118D1118YGacTac22B.1.5610.000794
S1118D1118YGacTac22D.20.00015
S1118D1118YGacTac22P.60.006289
S1118D1118YGacTac11AD.10.004115
S1118D1118YGacTac11AW.10.003049
S1118D1118YGacTac11AY.100.00053
S1118D1118YGacTac11AY.120.2.10.000498
S1118D1118YGacTac11AY.140.000088
S1118D1118YGacTac11AY.230.00007
S1118D1118YGacTac11AY.240.000431
S1118D1118YGacTac11AY.29.10.000221
S1118D1118YGacTac11AY.320.000532
S1118D1118YGacTac11AY.340.000097
S1118D1118YGacTac11AY.350.000233
S1118D1118YGacTac11AY.380.000499
S1118D1118YGacTac11AY.39.10.00004
S1118D1118YGacTac11AY.4.20.000022
S1118D1118YGacTac11AY.4.2.10.000149
S1118D1118YGacTac11AY.400.000964
S1118D1118YGacTac11AY.460.000104
S1118D1118YGacTac11AY.46.40.000165
S1118D1118YGacTac11AY.5.10.003759
S1118D1118YGacTac11AY.610.000105
S1118D1118YGacTac11AY.70.000196
S1118D1118YGacTac11AY.710.000475
S1118D1118YGacTac11AY.770.001127
S1118D1118YGacTac11AY.90.000068
S1118D1118YGacTac11AY.9.20.000037
S1118D1118YGacTac11B0.000128
S1118D1118YGacTac11B.1.1.1740.003378
S1118D1118YGacTac11B.1.1.2050.003717
S1118D1118YGacTac11B.1.1.2200.001859
S1118D1118YGacTac11B.1.1.2690.001353
S1118D1118YGacTac11B.1.1.2750.011236
S1118D1118YGacTac11B.1.1.2940.001266
S1118D1118YGacTac11B.1.1.2980.000862
S1118D1118YGacTac11B.1.1.3170.000412
S1118D1118YGacTac11B.1.1.3890.006061
S1118D1118YGacTac11B.1.1.390.00051
S1118D1118YGacTac11B.1.1.990.02381
S1118D1118YGacTac11B.1.1600.000031
S1118D1118YGacTac11B.1.177.70.000165
S1118D1118YGacTac11B.1.1780.02381
S1118D1118YGacTac11B.1.2180.005155
S1118D1118YGacTac11B.1.2350.002519
S1118D1118YGacTac11B.1.258.110.000396
S1118D1118YGacTac11B.1.3490.000715
S1118D1118YGacTac11B.1.36.160.001425
S1118D1118YGacTac11B.1.36.290.000517
S1118D1118YGacTac11B.1.4000.000429
S1118D1118YGacTac11B.1.4970.000315
S1118D1118YGacTac11B.1.4990.00105
S1118D1118YGacTac11B.1.5260.000024
S1118D1118YGacTac11B.1.5300.007143
S1118D1118YGacTac11B.1.5410.004425
S1118D1118YGacTac11B.1.5750.000303
S1118D1118YGacTac11B.1.5770.000687
S1118D1118YGacTac11B.1.5950.000261
S1118D1118YGacTac11B.1.617.10.000129
S1118D1118YGacTac11B.1.6370.000073
S1118D1118YGacTac11B.150.017544
S1118D1118YGacTac11B.550.00295
S1118D1118YGacTac11C.1.20.004255
S1118D1118YGacTac11C.350.000774
S1118D1118YGacTac11C.360.000911
S1118D1118YGacTac11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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