CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = C1250F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1250C1250FnonsyntGttTt27712771125310-25312

Details of the mutation C1250F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1250C1250FtGttTt27712771All0.00053
S1250C1250FtGttTt532532AY.40.000828
S1250C1250FtGttTt295295B.1.1.70.000264
S1250C1250FtGttTt272272P.1.140.013002
S1250C1250FtGttTt169169B.1.1.2400.793427
S1250C1250FtGttTt129129B.1.1600.004023
S1250C1250FtGttTt122122AY.1190.004308
S1250C1250FtGttTt107107B.1.617.20.000403
S1250C1250FtGttTt9494AY.340.009115
S1250C1250FtGttTt6868AY.430.000301
S1250C1250FtGttTt6363AY.330.004207
S1250C1250FtGttTt4949AY.1030.000304
S1250C1250FtGttTt4848B.1.177.870.034934
S1250C1250FtGttTt4343B.1.351.50.025779
S1250C1250FtGttTt3838B.1.2670.703704
S1250C1250FtGttTt3333AY.440.000201
S1250C1250FtGttTt2929B.1.4040.03776
S1250C1250FtGttTt2828P.10.000441
S1250C1250FtGttTt2424AY.1020.000636
S1250C1250FtGttTt2424AY.250.000144
S1250C1250FtGttTt2222B.10.000202
S1250C1250FtGttTt2222B.1.2580.001464
S1250C1250FtGttTt2121AY.390.000519
S1250C1250FtGttTt1919AY.360.002816
S1250C1250FtGttTt1919B.1.1770.00025
S1250C1250FtGttTt1717C.370.001973
S1250C1250FtGttTt1616AY.290.000252
S1250C1250FtGttTt1616B.1.20.000141
S1250C1250FtGttTt1515B.1.10.000272
S1250C1250FtGttTt1515B.1.621.10.007587
S1250C1250FtGttTt1414AY.30.000139
S1250C1250FtGttTt1414B.1.36.100.066986
S1250C1250FtGttTt1313B.1.1.2980.011207
S1250C1250FtGttTt1212B.1.2340.001583
S1250C1250FtGttTt1212B.1.4270.000606
S1250C1250FtGttTt1111AY.60.000452
S1250C1250FtGttTt99P.1.70.002874
S1250C1250FtGttTt88AY.1180.000501
S1250C1250FtGttTt88AY.230.000558
S1250C1250FtGttTt88AY.4.20.000174
S1250C1250FtGttTt88B.1.1.280.00249
S1250C1250FtGttTt88B.1.1.5190.000318
S1250C1250FtGttTt88B.1.5260.000188
S1250C1250FtGttTt77AY.1060.002344
S1250C1250FtGttTt77AY.420.000282
S1250C1250FtGttTt77B.1.1280.004447
S1250C1250FtGttTt66AY.610.000629
S1250C1250FtGttTt66AY.980.000474
S1250C1250FtGttTt66B.1.177.380.0625
S1250C1250FtGttTt66B.1.3510.000178
S1250C1250FtGttTt66B.400.002186
S1250C1250FtGttTt66P.1.80.028708
S1250C1250FtGttTt55AY.120.00158
S1250C1250FtGttTt55AY.260.000142
S1250C1250FtGttTt55AY.3.10.000426
S1250C1250FtGttTt55AY.450.000608
S1250C1250FtGttTt55AY.50.000103
S1250C1250FtGttTt55B.1.4290.000118
S1250C1250FtGttTt44AY.1000.000184
S1250C1250FtGttTt44AY.1070.001864
S1250C1250FtGttTt44AY.1080.00441
S1250C1250FtGttTt44AY.1200.000149
S1250C1250FtGttTt44AY.920.001149
S1250C1250FtGttTt44AY.930.001092
S1250C1250FtGttTt44B.1.1.1410.008048
S1250C1250FtGttTt44B.1.1.2860.011594
S1250C1250FtGttTt44B.1.177.240.005181
S1250C1250FtGttTt44B.1.5960.000349
S1250C1250FtGttTt44B.1.617.10.000516
S1250C1250FtGttTt44B.1.6210.000354
S1250C1250FtGttTt44C.36.30.002269
S1250C1250FtGttTt44P.1.170.000647
S1250C1250FtGttTt33A.2.5.20.004717
S1250C1250FtGttTt33AY.1210.000406
S1250C1250FtGttTt33AY.200.000117
S1250C1250FtGttTt33AY.700.000626
S1250C1250FtGttTt33AY.9.10.000251
S1250C1250FtGttTt33AY.9.20.00011
S1250C1250FtGttTt33B.1.1.4860.004732
S1250C1250FtGttTt33B.1.351.20.000908
S1250C1250FtGttTt33B.1.36.290.001552
S1250C1250FtGttTt33B.1.6200.002838
S1250C1250FtGttTt22A.2.50.000998
S1250C1250FtGttTt22A.2.5.30.020619
S1250C1250FtGttTt22AY.1170.000169
S1250C1250FtGttTt22AY.29.10.000441
S1250C1250FtGttTt22AY.300.000791
S1250C1250FtGttTt22AY.46.50.000397
S1250C1250FtGttTt22AY.46.60.000144
S1250C1250FtGttTt22AY.690.000373
S1250C1250FtGttTt22AY.98.10.000097
S1250C1250FtGttTt22AY.99.20.000184
S1250C1250FtGttTt22B0.000256
S1250C1250FtGttTt22B.1.1.2220.000408
S1250C1250FtGttTt22B.1.1.2300.018349
S1250C1250FtGttTt22B.1.1.250.001137
S1250C1250FtGttTt22B.1.160.280.005848
S1250C1250FtGttTt22B.1.177.810.000379
S1250C1250FtGttTt22B.1.2430.000139
S1250C1250FtGttTt22B.1.36.160.002849
S1250C1250FtGttTt22B.1.438.10.000215
S1250C1250FtGttTt22B.1.5250.000226
S1250C1250FtGttTt22B.1.5640.000852
S1250C1250FtGttTt22B.1.5760.001813
S1250C1250FtGttTt22B.1.6230.001073
S1250C1250FtGttTt22B.1.9.50.011364
S1250C1250FtGttTt22P.20.000373
S1250C1250FtGttTt22Q.30.00029
S1250C1250FtGttTt11A0.000387
S1250C1250FtGttTt11A.20.000662
S1250C1250FtGttTt11AE.50.018519
S1250C1250FtGttTt11AY.1050.000643
S1250C1250FtGttTt11AY.1160.000287
S1250C1250FtGttTt11AY.120.20.001285
S1250C1250FtGttTt11AY.160.00038
S1250C1250FtGttTt11AY.16.10.00047
S1250C1250FtGttTt11AY.190.00114
S1250C1250FtGttTt11AY.350.000233
S1250C1250FtGttTt11AY.370.000316
S1250C1250FtGttTt11AY.380.000499
S1250C1250FtGttTt11AY.39.10.00004
S1250C1250FtGttTt11AY.39.20.001541
S1250C1250FtGttTt11AY.470.000031
S1250C1250FtGttTt11AY.5.30.000337
S1250C1250FtGttTt11AY.5.40.000277
S1250C1250FtGttTt11AY.520.000814
S1250C1250FtGttTt11AY.540.000095
S1250C1250FtGttTt11AY.550.000917
S1250C1250FtGttTt11AY.640.000595
S1250C1250FtGttTt11AY.680.000274
S1250C1250FtGttTt11AY.7.10.000113
S1250C1250FtGttTt11AY.710.000475
S1250C1250FtGttTt11AY.730.000665
S1250C1250FtGttTt11AY.750.000056
S1250C1250FtGttTt11AY.75.10.00018
S1250C1250FtGttTt11AY.760.004831
S1250C1250FtGttTt11AY.80.000606
S1250C1250FtGttTt11B.1.1.10.000327
S1250C1250FtGttTt11B.1.1.1870.00885
S1250C1250FtGttTt11B.1.1.2320.001815
S1250C1250FtGttTt11B.1.1.3050.003861
S1250C1250FtGttTt11B.1.1.3060.000438
S1250C1250FtGttTt11B.1.1.3290.003846
S1250C1250FtGttTt11B.1.1.330.000421
S1250C1250FtGttTt11B.1.1.3510.002793
S1250C1250FtGttTt11B.1.1.3690.000446
S1250C1250FtGttTt11B.1.1.3940.02439
S1250C1250FtGttTt11B.1.1.5210.005348
S1250C1250FtGttTt11B.1.177.210.000076
S1250C1250FtGttTt11B.1.2100.002132
S1250C1250FtGttTt11B.1.2210.000071
S1250C1250FtGttTt11B.1.2320.000537
S1250C1250FtGttTt11B.1.2400.000216
S1250C1250FtGttTt11B.1.258.70.001912
S1250C1250FtGttTt11B.1.2930.0125
S1250C1250FtGttTt11B.1.3400.004292
S1250C1250FtGttTt11B.1.360.000146
S1250C1250FtGttTt11B.1.3690.000285
S1250C1250FtGttTt11B.1.4200.010417
S1250C1250FtGttTt11B.1.4700.001404
S1250C1250FtGttTt11B.1.5580.004566
S1250C1250FtGttTt11B.1.5650.00081
S1250C1250FtGttTt11B.1.5950.000261
S1250C1250FtGttTt11B.1.6220.012987
S1250C1250FtGttTt11C.350.000774
S1250C1250FtGttTt11D.20.000075
S1250C1250FtGttTt11D.30.005917
S1250C1250FtGttTt11P.1.150.000232
S1250C1250FtGttTt11P.1.17.10.000875
S1250C1250FtGttTt11P.30.001595
S1250C1250FtGttTt11Q.10.000126
S1250C1250FtGttTt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.