CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = C1235F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1235C1235FnonsyntGctTc437543710.99908625265-25267
S1235C1235FnonsyntGCtTT437540.00091428625265-25267

Details of the mutation C1235F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1235C1235FtGctTc43714375All0.000836
S1235C1235FtGCtTT44375All0.000001
S1235C1235FtGctTc762762AY.40.001186
S1235C1235FtGctTc492492B.1.1.70.00044
S1235C1235FtGctTc461461AY.430.002042
S1235C1235FtGctTc325325AY.30.003233
S1235C1235FtGctTc214214B.1.617.20.000806
S1235C1235FtGctTc208208B.1.2430.014474
S1235C1235FtGctTc208208P.1.80.995215
S1235C1235FtGctTc186186AY.1030.001155
S1235C1235FtGctTc109109AY.3.10.009293
S1235C1235FtGctTc8585B.1.4290.002
S1235C1235FtGctTc6567B.1.6290.866667
S1235C1235FtGCtTT267B.1.6290.026667
S1235C1235FtGctTc5858AY.1020.001538
S1235C1235FtGctTc5555AY.70.01078
S1235C1235FtGctTc4747AY.250.000283
S1235C1235FtGctTc4445B.10.000403
S1235C1235FtGCtTT145B.10.000009
S1235C1235FtGctTc4343AY.440.000262
S1235C1235FtGctTc4343B.1.10.00078
S1235C1235FtGctTc3939P.10.000614
S1235C1235FtGctTc3838B.1.1770.0005
S1235C1235FtGctTc3333AY.530.009488
S1235C1235FtGctTc2929AY.39.10.001149
S1235C1235FtGctTc2828B.1.2820.41791
S1235C1235FtGctTc2727B.1.1.3070.068354
S1235C1235FtGctTc2525AY.290.000394
S1235C1235FtGctTc2525AY.4.20.000542
S1235C1235FtGctTc2424AY.610.002515
S1235C1235FtGctTc2323B.1.1.10.007514
S1235C1235FtGctTc2121B.1.1600.000655
S1235C1235FtGctTc2121B.1.2580.001397
S1235C1235FtGctTc2020B.1.5260.00047
S1235C1235FtGctTc1818A.2.50.008982
S1235C1235FtGctTc1717AY.1190.0006
S1235C1235FtGctTc1717B.1.20.00015
S1235C1235FtGctTc1616AY.360.002371
S1235C1235FtGctTc1616B.1.3510.000476
S1235C1235FtGctTc1515AY.470.000467
S1235C1235FtGctTc1515B.1.1110.017626
S1235C1235FtGctTc1414AY.260.000396
S1235C1235FtGctTc1414B.1.1.2140.000776
S1235C1235FtGctTc1313AY.390.000321
S1235C1235FtGctTc1313AY.46.50.002579
S1235C1235FtGctTc1313AY.50.000268
S1235C1235FtGctTc1313P.1.140.000621
S1235C1235FtGctTc1212AY.60.000494
S1235C1235FtGctTc1111AY.980.000869
S1235C1235FtGctTc1010R.10.0009
S1235C1235FtGctTc99B.1.177.40.0019
S1235C1235FtGctTc99B.1.617.10.001161
S1235C1235FtGctTc88B.1.3240.012841
S1235C1235FtGctTc88B.1.390.03125
S1235C1235FtGctTc88P.20.001493
S1235C1235FtGctTc77AY.200.000272
S1235C1235FtGctTc77AY.230.000488
S1235C1235FtGctTc77B.1.258.110.002774
S1235C1235FtGctTc77B.1.4270.000353
S1235C1235FtGctTc77B.1.5960.00061
S1235C1235FtGctTc66AY.1160.001721
S1235C1235FtGctTc66AY.1200.000223
S1235C1235FtGctTc66AY.450.00073
S1235C1235FtGctTc66AY.460.000624
S1235C1235FtGctTc66AY.46.40.000987
S1235C1235FtGctTc66AY.690.00112
S1235C1235FtGctTc66B.1.258.170.000624
S1235C1235FtGctTc66B.1.5090.005195
S1235C1235FtGctTc66B.1.6090.002876
S1235C1235FtGctTc55AY.1100.000563
S1235C1235FtGctTc55AY.1170.000423
S1235C1235FtGctTc55AY.5.40.001384
S1235C1235FtGctTc55AY.750.00028
S1235C1235FtGctTc55AY.9.10.000419
S1235C1235FtGctTc55AY.98.10.000242
S1235C1235FtGctTc55B.1.1.5210.026738
S1235C1235FtGctTc45B.1.3690.001141
S1235C1235FtGCtTT15B.1.3690.000285
S1235C1235FtGctTc55P.1.160.001871
S1235C1235FtGctTc44AY.330.000267
S1235C1235FtGctTc44AY.410.001176
S1235C1235FtGctTc44AY.420.000161
S1235C1235FtGctTc44AY.46.20.002541
S1235C1235FtGctTc44AY.740.000463
S1235C1235FtGctTc44B.1.1.2070.004728
S1235C1235FtGctTc44B.1.1.500.002716
S1235C1235FtGctTc44B.1.1.5190.000159
S1235C1235FtGctTc44B.1.1510.044444
S1235C1235FtGctTc44B.1.177.770.002905
S1235C1235FtGctTc44B.1.3110.001098
S1235C1235FtGctTc44B.1.466.20.001565
S1235C1235FtGctTc33AY.1000.000138
S1235C1235FtGctTc33AY.1060.001005
S1235C1235FtGctTc33AY.1090.002219
S1235C1235FtGctTc33AY.16.10.00141
S1235C1235FtGctTc33AY.270.000194
S1235C1235FtGctTc33AY.34.10.00153
S1235C1235FtGctTc33AY.370.000948
S1235C1235FtGctTc33AY.46.60.000217
S1235C1235FtGctTc33AY.910.002191
S1235C1235FtGctTc33B.1.177.330.004934
S1235C1235FtGctTc33B.1.6210.000266
S1235C1235FtGctTc33B.1.621.10.001517
S1235C1235FtGctTc22A0.000774
S1235C1235FtGctTc22AY.1050.001286
S1235C1235FtGctTc22AY.1130.000285
S1235C1235FtGctTc22AY.1180.000125
S1235C1235FtGctTc22AY.4.50.000215
S1235C1235FtGctTc22AY.400.001929
S1235C1235FtGctTc22AY.510.001818
S1235C1235FtGctTc22AY.590.001059
S1235C1235FtGctTc22AY.840.000875
S1235C1235FtGctTc22AY.860.00166
S1235C1235FtGctTc22AY.90.000135
S1235C1235FtGctTc22AY.9.20.000073
S1235C1235FtGctTc22AY.920.000575
S1235C1235FtGctTc22AY.99.20.000184
S1235C1235FtGctTc22B.1.1.1700.002494
S1235C1235FtGctTc22B.1.1.390.001019
S1235C1235FtGctTc22B.1.1.700.000682
S1235C1235FtGctTc22B.1.160.70.004158
S1235C1235FtGctTc22B.1.1640.029851
S1235C1235FtGctTc22B.1.177.70.00033
S1235C1235FtGctTc22B.1.1990.008264
S1235C1235FtGctTc22B.1.2140.007326
S1235C1235FtGctTc22B.1.2320.001075
S1235C1235FtGctTc22B.1.4920.014085
S1235C1235FtGctTc22B.1.5250.000226
S1235C1235FtGctTc22B.1.5750.000607
S1235C1235FtGctTc22B.1.5950.000522
S1235C1235FtGctTc22B.1.6300.010471
S1235C1235FtGctTc22B.6.60.001778
S1235C1235FtGctTc11AY.1110.000183
S1235C1235FtGctTc11AY.120.000316
S1235C1235FtGctTc11AY.120.10.000321
S1235C1235FtGctTc11AY.1210.000135
S1235C1235FtGctTc11AY.150.002222
S1235C1235FtGctTc11AY.160.00038
S1235C1235FtGctTc11AY.210.001898
S1235C1235FtGctTc11AY.340.000097
S1235C1235FtGctTc11AY.5.30.000337
S1235C1235FtGctTc11AY.550.000917
S1235C1235FtGctTc11AY.620.000436
S1235C1235FtGctTc11AY.650.000533
S1235C1235FtGctTc11AY.7.10.000113
S1235C1235FtGctTc11AY.820.001357
S1235C1235FtGctTc11AY.900.000684
S1235C1235FtGctTc11AY.950.000761
S1235C1235FtGctTc11AZ.30.00152
S1235C1235FtGctTc11B.1.1.1740.003378
S1235C1235FtGctTc11B.1.1.2000.007463
S1235C1235FtGctTc11B.1.1.2220.000204
S1235C1235FtGctTc11B.1.1.2730.006757
S1235C1235FtGctTc11B.1.1.280.000311
S1235C1235FtGctTc11B.1.1.2840.000107
S1235C1235FtGctTc11B.1.1.2910.000742
S1235C1235FtGctTc11B.1.1.3110.000358
S1235C1235FtGctTc11B.1.1.3170.000412
S1235C1235FtGctTc11B.1.1.3180.000302
S1235C1235FtGctTc11B.1.1.330.000421
S1235C1235FtGctTc11B.1.1.3650.005587
S1235C1235FtGctTc11B.1.1.3690.000446
S1235C1235FtGctTc11B.1.1.370.000193
S1235C1235FtGctTc11B.1.1.4840.1
S1235C1235FtGctTc11B.1.1.4870.005587
S1235C1235FtGctTc11B.1.1.630.000386
S1235C1235FtGctTc11B.1.1260.001276
S1235C1235FtGctTc11B.1.1470.000756
S1235C1235FtGctTc11B.1.177.140.006098
S1235C1235FtGctTc11B.1.177.420.000894
S1235C1235FtGctTc11B.1.177.520.001757
S1235C1235FtGctTc11B.1.177.600.000218
S1235C1235FtGctTc11B.1.177.730.000566
S1235C1235FtGctTc11B.1.177.860.000183
S1235C1235FtGctTc11B.1.2130.014925
S1235C1235FtGctTc11B.1.2210.000071
S1235C1235FtGctTc11B.1.2230.002778
S1235C1235FtGctTc11B.1.2650.001271
S1235C1235FtGctTc11B.1.2770.02381
S1235C1235FtGctTc11B.1.2790.000514
S1235C1235FtGctTc11B.1.360.000146
S1235C1235FtGctTc11B.1.3900.010638
S1235C1235FtGctTc11B.1.3960.000706
S1235C1235FtGctTc11B.1.4020.009804
S1235C1235FtGctTc11B.1.4620.007246
S1235C1235FtGctTc11B.1.5230.002451
S1235C1235FtGctTc11B.1.5270.003704
S1235C1235FtGctTc11B.1.5640.000426
S1235C1235FtGctTc11B.1.5800.004065
S1235C1235FtGctTc11B.1.5880.00091
S1235C1235FtGctTc11B.1.596.10.009346
S1235C1235FtGctTc11B.1.6270.00202
S1235C1235FtGctTc11B.1.6370.000073
S1235C1235FtGctTc11B.400.000364
S1235C1235FtGctTc11B.60.00091
S1235C1235FtGctTc11C.350.000774
S1235C1235FtGctTc11C.370.000116
S1235C1235FtGctTc11N.50.001767
S1235C1235FtGctTc11P.1.170.000162
S1235C1235FtGctTc11P.1.70.000319
S1235C1235FtGctTc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.