CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A845V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S845A845VnonsyngCtgTt182218210.99945124095-24097
S845A845VnonsyngCTgTC182210.00054884724095-24097

Details of the mutation A845V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S845A845VgCtgTt18211822All0.000348
S845A845VgCTgTC11822All0
S845A845VgCtgTt390390B.1.1.70.000349
S845A845VgCtgTt361361AY.40.000562
S845A845VgCtgTt9898B.1.617.20.000369
S845A845VgCtgTt8080AY.430.000354
S845A845VgCtgTt6666AY.250.000397
S845A845VgCtgTt6262AY.1030.000385
S845A845VgCtgTt5151B.1.20.000449
S845A845VgCtgTt4747B.1.10.000853
S845A845VgCtgTt4343AY.46.20.027319
S845A845VgCtgTt4141AY.30.000408
S845A845VgCtgTt3737B.10.000339
S845A845VgCtgTt1919B.1.1770.00025
S845A845VgCtgTt1818AY.4.40.007365
S845A845VgCtgTt1818B.1.4970.005666
S845A845VgCtgTt1717B.1.177.170.013957
S845A845VgCtgTt1515AY.440.000091
S845A845VgCtgTt1515B.1.4290.000353
S845A845VgCtgTt1515P.10.000236
S845A845VgCtgTt1414AY.390.000346
S845A845VgCtgTt1313AY.50.000268
S845A845VgCtgTt1313B.1.2400.002802
S845A845VgCtgTt1313B.1.2430.000905
S845A845VgCtgTt1313P.1.170.002103
S845A845VgCtgTt1111B.1.258.170.001144
S845A845VgCtgTt1010B.1.1.1980.014684
S845A845VgCtgTt1010B.1.3510.000297
S845A845VgCtgTt99B.1.1.330.003788
S845A845VgCtgTt99B.1.4270.000454
S845A845VgCtgTt78AY.1170.000592
S845A845VgCTgTC18AY.1170.000085
S845A845VgCtgTt88B.1.177.50.009938
S845A845VgCtgTt88B.1.5260.000188
S845A845VgCtgTt77AY.4.20.000152
S845A845VgCtgTt77AY.420.000282
S845A845VgCtgTt77AY.720.009524
S845A845VgCtgTt77AY.9.20.000257
S845A845VgCtgTt77B.1.177.210.000535
S845A845VgCtgTt77C.370.000812
S845A845VgCtgTt66AY.1020.000159
S845A845VgCtgTt66AY.290.000095
S845A845VgCtgTt66B.1.1.2550.018182
S845A845VgCtgTt66P.1.20.006936
S845A845VgCtgTt55AY.1000.00023
S845A845VgCtgTt55AY.460.00052
S845A845VgCtgTt55B.1.177.510.022831
S845A845VgCtgTt55B.1.360.00073
S845A845VgCtgTt55Q.20.003067
S845A845VgCtgTt44AY.1060.00134
S845A845VgCtgTt44AY.260.000113
S845A845VgCtgTt44AY.60.000165
S845A845VgCtgTt44B.1.1.4280.037736
S845A845VgCtgTt44B.1.438.10.000429
S845A845VgCtgTt44D.20.0003
S845A845VgCtgTt33A.2.5.20.004717
S845A845VgCtgTt33AY.1190.000106
S845A845VgCtgTt33AY.360.000445
S845A845VgCtgTt33AY.46.60.000217
S845A845VgCtgTt33B.1.1.2840.000322
S845A845VgCtgTt33B.1.177.570.000843
S845A845VgCtgTt33B.1.177.860.00055
S845A845VgCtgTt33B.1.2210.000213
S845A845VgCtgTt33B.1.5250.000339
S845A845VgCtgTt33B.1.6090.001438
S845A845VgCtgTt33P.1.140.000143
S845A845VgCtgTt22AD.20.000438
S845A845VgCtgTt22AY.1080.002205
S845A845VgCtgTt22AY.1180.000125
S845A845VgCtgTt22AY.1200.000074
S845A845VgCtgTt22AY.120.10.000642
S845A845VgCtgTt22AY.29.10.000441
S845A845VgCtgTt22AY.540.000191
S845A845VgCtgTt22AY.550.001835
S845A845VgCtgTt22AY.610.00021
S845A845VgCtgTt22AY.630.000774
S845A845VgCtgTt22AY.750.000112
S845A845VgCtgTt22AY.850.000854
S845A845VgCtgTt22AY.980.000158
S845A845VgCtgTt22AY.98.10.000097
S845A845VgCtgTt22B.1.1.1570.001826
S845A845VgCtgTt22B.1.1.1580.02439
S845A845VgCtgTt22B.1.1.1760.000879
S845A845VgCtgTt22B.1.1.2220.000408
S845A845VgCtgTt22B.1.1.3060.000877
S845A845VgCtgTt22B.1.1.460.008734
S845A845VgCtgTt22B.1.1600.000062
S845A845VgCtgTt22B.1.2580.000133
S845A845VgCtgTt22B.1.351.30.001753
S845A845VgCtgTt22B.1.36.170.000988
S845A845VgCtgTt22B.1.36.290.001035
S845A845VgCtgTt22B.1.3960.001411
S845A845VgCtgTt22B.1.4700.002809
S845A845VgCtgTt22B.1.5950.000522
S845A845VgCtgTt22B.1.5960.000174
S845A845VgCtgTt22P.1.10.000635
S845A845VgCtgTt11A.10.000282
S845A845VgCtgTt11AA.70.009174
S845A845VgCtgTt11AM.40.003571
S845A845VgCtgTt11AU.30.00211
S845A845VgCtgTt11AY.1010.00049
S845A845VgCtgTt11AY.20.000356
S845A845VgCtgTt11AY.200.000039
S845A845VgCtgTt11AY.230.00007
S845A845VgCtgTt11AY.270.000065
S845A845VgCtgTt11AY.320.000532
S845A845VgCtgTt11AY.350.000233
S845A845VgCtgTt11AY.4.2.10.000149
S845A845VgCtgTt11AY.46.40.000165
S845A845VgCtgTt11AY.490.003195
S845A845VgCtgTt11AY.650.000533
S845A845VgCtgTt11AY.690.000187
S845A845VgCtgTt11AY.7.20.000559
S845A845VgCtgTt11AY.75.10.00018
S845A845VgCtgTt11AY.820.001357
S845A845VgCtgTt11AY.830.001724
S845A845VgCtgTt11AY.870.000833
S845A845VgCtgTt11AY.90.000068
S845A845VgCtgTt11AY.9.10.000084
S845A845VgCtgTt11AY.920.000287
S845A845VgCtgTt11AY.930.000273
S845A845VgCtgTt11AY.99.10.001553
S845A845VgCtgTt11B0.000128
S845A845VgCtgTt11B.1.1.1410.002012
S845A845VgCtgTt11B.1.1.1610.003534
S845A845VgCtgTt11B.1.1.1890.001513
S845A845VgCtgTt11B.1.1.2750.011236
S845A845VgCtgTt11B.1.1.2770.000759
S845A845VgCtgTt11B.1.1.3260.001761
S845A845VgCtgTt11B.1.1.370.000193
S845A845VgCtgTt11B.1.1.3700.012658
S845A845VgCtgTt11B.1.1.4090.002833
S845A845VgCtgTt11B.1.1.4200.001006
S845A845VgCtgTt11B.1.1.5190.00004
S845A845VgCtgTt11B.1.1.520.012195
S845A845VgCtgTt11B.1.1.5230.001563
S845A845VgCtgTt11B.1.1.5250.005464
S845A845VgCtgTt11B.1.1390.000733
S845A845VgCtgTt11B.1.160.120.00641
S845A845VgCtgTt11B.1.177.100.000878
S845A845VgCtgTt11B.1.177.120.000152
S845A845VgCtgTt11B.1.177.160.000664
S845A845VgCtgTt11B.1.177.230.003236
S845A845VgCtgTt11B.1.177.320.00135
S845A845VgCtgTt11B.1.177.40.000211
S845A845VgCtgTt11B.1.177.430.001477
S845A845VgCtgTt11B.1.177.600.000218
S845A845VgCtgTt11B.1.177.830.001481
S845A845VgCtgTt11B.1.2340.000132
S845A845VgCtgTt11B.1.258.100.011364
S845A845VgCtgTt11B.1.2790.000514
S845A845VgCtgTt11B.1.3200.001245
S845A845VgCtgTt11B.1.3240.001605
S845A845VgCtgTt11B.1.351.20.000303
S845A845VgCtgTt11B.1.36.390.002217
S845A845VgCtgTt11B.1.3890.001002
S845A845VgCtgTt11B.1.4000.000429
S845A845VgCtgTt11B.1.428.30.012821
S845A845VgCtgTt11B.1.4330.003195
S845A845VgCtgTt11B.1.440.008333
S845A845VgCtgTt11B.1.4410.009615
S845A845VgCtgTt11B.1.4560.003268
S845A845VgCtgTt11B.1.5110.034483
S845A845VgCtgTt11B.1.5150.014493
S845A845VgCtgTt11B.1.5610.000397
S845A845VgCtgTt11B.1.5970.00463
S845A845VgCtgTt11B.1.619.10.000641
S845A845VgCtgTt11B.1.6300.005236
S845A845VgCtgTt11B.1.6370.000073
S845A845VgCtgTt11B.290.003509
S845A845VgCtgTt11B.4.50.011905
S845A845VgCtgTt11C.360.000911
S845A845VgCtgTt11C.36.30.000567
S845A845VgCtgTt11C.37.10.002618
S845A845VgCtgTt11C.380.008065
S845A845VgCtgTt11C.60.037037
S845A845VgCtgTt11P.20.000187
S845A845VgCtgTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.