CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 831 | A831V | nonsyn | gCt | gTt | 2087 | 2084 | 0.998563 | 24053-24055 | |
S | 831 | A831V | nonsyn | gCT | gTC | 2087 | 2 | 0.000958313 | 24053-24055 | |
S | 831 | A831V | nonsyn | gCT | gTG | 2087 | 1 | 0.000479157 | 24053-24055 |
Details of the mutation A831V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 831 | A831V | gCt | gTt | 2084 | 2087 | All | 0.000399 |
S | 831 | A831V | gCT | gTC | 2 | 2087 | All | 0 |
S | 831 | A831V | gCT | gTG | 1 | 2087 | All | 0 |
S | 831 | A831V | gCt | gTt | 910 | 910 | B.1.1.7 | 0.000815 |
S | 831 | A831V | gCt | gTt | 265 | 265 | AY.4 | 0.000412 |
S | 831 | A831V | gCt | gTt | 148 | 148 | AY.43 | 0.000656 |
S | 831 | A831V | gCt | gTt | 94 | 94 | B.1.617.2 | 0.000354 |
S | 831 | A831V | gCt | gTt | 59 | 59 | B.1.1.17 | 0.983333 |
S | 831 | A831V | gCt | gTt | 35 | 35 | AY.25 | 0.000211 |
S | 831 | A831V | gCt | gTt | 33 | 33 | AY.103 | 0.000205 |
S | 831 | A831V | gCt | gTt | 31 | 31 | AY.61 | 0.003248 |
S | 831 | A831V | gCt | gTt | 24 | 24 | AY.54 | 0.002288 |
S | 831 | A831V | gCt | gTt | 22 | 22 | B.1.160 | 0.000686 |
S | 831 | A831V | gCt | gTt | 22 | 22 | P.1 | 0.000347 |
S | 831 | A831V | gCt | gTt | 18 | 18 | AY.3 | 0.000179 |
S | 831 | A831V | gCt | gTt | 18 | 18 | AY.75.1 | 0.003246 |
S | 831 | A831V | gCt | gTt | 18 | 18 | B.1.2 | 0.000158 |
S | 831 | A831V | gCt | gTt | 17 | 17 | AY.26 | 0.000481 |
S | 831 | A831V | gCt | gTt | 17 | 17 | B.1.427 | 0.000858 |
S | 831 | A831V | gCt | gTt | 15 | 15 | AY.44 | 0.000091 |
S | 831 | A831V | gCt | gTt | 13 | 13 | AY.102 | 0.000345 |
S | 831 | A831V | gCt | gTt | 13 | 13 | B.1.177 | 0.000171 |
S | 831 | A831V | gCt | gTt | 11 | 11 | AY.114 | 0.002542 |
S | 831 | A831V | gCt | gTt | 11 | 11 | AY.20 | 0.000428 |
S | 831 | A831V | gCt | gTt | 11 | 11 | AY.39 | 0.000272 |
S | 831 | A831V | gCt | gTt | 10 | 10 | AY.23 | 0.000697 |
S | 831 | A831V | gCt | gTt | 10 | 10 | B.1 | 0.000092 |
S | 831 | A831V | gCt | gTt | 9 | 9 | B.1.351 | 0.000268 |
S | 831 | A831V | gCt | gTt | 8 | 8 | AY.35 | 0.001864 |
S | 831 | A831V | gCt | gTt | 8 | 8 | AY.9.2 | 0.000294 |
S | 831 | A831V | gCt | gTt | 8 | 8 | B.1.1 | 0.000145 |
S | 831 | A831V | gCt | gTt | 7 | 7 | AY.16 | 0.002658 |
S | 831 | A831V | gCt | gTt | 7 | 7 | AY.42 | 0.000282 |
S | 831 | A831V | gCt | gTt | 7 | 7 | B.1.429 | 0.000165 |
S | 831 | A831V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
S | 831 | A831V | gCt | gTt | 6 | 6 | B.1.177.7 | 0.000989 |
S | 831 | A831V | gCt | gTt | 6 | 6 | R.1 | 0.00054 |
S | 831 | A831V | gCt | gTt | 4 | 5 | AY.75 | 0.000224 |
S | 831 | A831V | gCT | gTC | 1 | 5 | AY.75 | 0.000056 |
S | 831 | A831V | gCt | gTt | 5 | 5 | B.1.1.176 | 0.002197 |
S | 831 | A831V | gCt | gTt | 5 | 5 | B.1.243 | 0.000348 |
S | 831 | A831V | gCt | gTt | 5 | 5 | B.1.637 | 0.000365 |
S | 831 | A831V | gCt | gTt | 5 | 5 | B.38 | 0.119048 |
S | 831 | A831V | gCt | gTt | 4 | 4 | A.2.5 | 0.001996 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.116 | 0.001147 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.4.2 | 0.000087 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.46.6 | 0.000289 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.5 | 0.000083 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.5.4 | 0.001107 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.9 | 0.00027 |
S | 831 | A831V | gCt | gTt | 3 | 4 | AY.98.1 | 0.000145 |
S | 831 | A831V | gCT | gTC | 1 | 4 | AY.98.1 | 0.000048 |
S | 831 | A831V | gCt | gTt | 4 | 4 | AY.99.2 | 0.000369 |
S | 831 | A831V | gCt | gTt | 4 | 4 | B.1.1.44 | 0.009639 |
S | 831 | A831V | gCt | gTt | 4 | 4 | B.1.1.519 | 0.000159 |
S | 831 | A831V | gCt | gTt | 4 | 4 | B.1.160.7 | 0.008316 |
S | 831 | A831V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.119 | 0.000106 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.33 | 0.0002 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.45 | 0.000365 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.46 | 0.000312 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.62 | 0.001307 |
S | 831 | A831V | gCt | gTt | 3 | 3 | AY.7.1 | 0.000338 |
S | 831 | A831V | gCt | gTt | 3 | 3 | B.1.351.3 | 0.002629 |
S | 831 | A831V | gCt | gTt | 3 | 3 | B.1.36.29 | 0.001552 |
S | 831 | A831V | gCt | gTt | 3 | 3 | Q.1 | 0.000379 |
S | 831 | A831V | gCt | gTt | 3 | 3 | Z.1 | 0.008671 |
S | 831 | A831V | gCt | gTt | 1 | 2 | 0.055556 | |
S | 831 | A831V | gCT | gTG | 1 | 2 | 0.055556 | |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.113 | 0.000285 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.2 | 0.000712 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.27 | 0.000129 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.55 | 0.001835 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.6 | 0.000082 |
S | 831 | A831V | gCt | gTt | 2 | 2 | AY.98 | 0.000158 |
S | 831 | A831V | gCt | gTt | 2 | 2 | B.1.1.318 | 0.000604 |
S | 831 | A831V | gCt | gTt | 2 | 2 | B.1.177.45 | 0.000762 |
S | 831 | A831V | gCt | gTt | 2 | 2 | B.1.234 | 0.000264 |
S | 831 | A831V | gCt | gTt | 2 | 2 | B.1.466.2 | 0.000782 |
S | 831 | A831V | gCt | gTt | 2 | 2 | B.26 | 0.029412 |
S | 831 | A831V | gCt | gTt | 2 | 2 | P.1.15 | 0.000465 |
S | 831 | A831V | gCt | gTt | 1 | 1 | A | 0.000387 |
S | 831 | A831V | gCt | gTt | 1 | 1 | A.2.5.2 | 0.001572 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.100 | 0.000046 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.118 | 0.000063 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.120 | 0.000037 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.121 | 0.000135 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.14 | 0.000088 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.34 | 0.000097 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.52 | 0.000814 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.59 | 0.00053 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
S | 831 | A831V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.232 | 0.001815 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.253 | 0.002506 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.312 | 0.001912 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.4 | 0.002976 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.1.83 | 0.00271 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.164 | 0.014925 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.192 | 0.009259 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.258 | 0.000067 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.258.17 | 0.000104 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.517 | 0.000427 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.530 | 0.007143 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.560 | 0.00463 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.1.76 | 0.011364 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.15 | 0.017544 |
S | 831 | A831V | gCt | gTt | 1 | 1 | B.6 | 0.00091 |
S | 831 | A831V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
S | 831 | A831V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
S | 831 | A831V | gCt | gTt | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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