CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 688 | A688V | nonsyn | gCt | gTt | 18520 | 18518 | 0.999892 | 23624-23626 | |
S | 688 | A688V | nonsyn | gCT | gTA | 18520 | 2 | 0.000107991 | 23624-23626 |
Details of the mutation A688V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 688 | A688V | gCt | gTt | 18518 | 18520 | All | 0.003542 |
S | 688 | A688V | gCT | gTA | 2 | 18520 | All | 0 |
S | 688 | A688V | gCt | gTt | 3043 | 3043 | P.1 | 0.047939 |
S | 688 | A688V | gCt | gTt | 2795 | 2795 | B.1.628 | 0.984848 |
S | 688 | A688V | gCt | gTt | 1917 | 1917 | B.1.1.7 | 0.001716 |
S | 688 | A688V | gCt | gTt | 1317 | 1317 | AY.4 | 0.00205 |
S | 688 | A688V | gCt | gTt | 973 | 973 | AY.7.1 | 0.109659 |
S | 688 | A688V | gCt | gTt | 490 | 490 | B.1.627 | 0.989899 |
S | 688 | A688V | gCt | gTt | 479 | 479 | B.1.177.57 | 0.134588 |
S | 688 | A688V | gCt | gTt | 454 | 454 | B.1.258 | 0.030212 |
S | 688 | A688V | gCt | gTt | 451 | 451 | B.1.617.2 | 0.001698 |
S | 688 | A688V | gCt | gTt | 431 | 431 | B.1.2 | 0.003795 |
S | 688 | A688V | gCt | gTt | 345 | 345 | B.1.1.303 | 0.953039 |
S | 688 | A688V | gCt | gTt | 295 | 295 | B.1.631 | 0.993266 |
S | 688 | A688V | gCt | gTt | 294 | 294 | AY.3 | 0.002924 |
S | 688 | A688V | gCt | gTt | 288 | 288 | B.1.634 | 0.986301 |
S | 688 | A688V | gCt | gTt | 284 | 285 | AY.43 | 0.001258 |
S | 688 | A688V | gCT | gTA | 1 | 285 | AY.43 | 0.000004 |
S | 688 | A688V | gCt | gTt | 279 | 279 | B.1 | 0.002556 |
S | 688 | A688V | gCt | gTt | 278 | 278 | AY.39 | 0.00687 |
S | 688 | A688V | gCt | gTt | 278 | 278 | B.1.369 | 0.079293 |
S | 688 | A688V | gCt | gTt | 276 | 276 | AY.119 | 0.009745 |
S | 688 | A688V | gCt | gTt | 270 | 270 | AY.25 | 0.001624 |
S | 688 | A688V | gCt | gTt | 185 | 185 | AY.103 | 0.001149 |
S | 688 | A688V | gCt | gTt | 158 | 158 | AY.102 | 0.004189 |
S | 688 | A688V | gCt | gTt | 132 | 132 | AY.98.1 | 0.006393 |
S | 688 | A688V | gCt | gTt | 131 | 131 | AY.20 | 0.005091 |
S | 688 | A688V | gCt | gTt | 113 | 113 | AY.100 | 0.005199 |
S | 688 | A688V | gCt | gTt | 111 | 111 | B.1.636 | 0.744966 |
S | 688 | A688V | gCt | gTt | 110 | 110 | AY.44 | 0.00067 |
S | 688 | A688V | gCt | gTt | 102 | 102 | B.1.1.117 | 0.990291 |
S | 688 | A688V | gCt | gTt | 93 | 93 | AY.117 | 0.00786 |
S | 688 | A688V | gCt | gTt | 91 | 91 | B.1.177 | 0.001198 |
S | 688 | A688V | gCt | gTt | 84 | 84 | B.1.243 | 0.005845 |
S | 688 | A688V | gCt | gTt | 81 | 81 | B.1.160 | 0.002526 |
S | 688 | A688V | gCt | gTt | 74 | 74 | B.1.1 | 0.001342 |
S | 688 | A688V | gCt | gTt | 63 | 63 | B.1.258.17 | 0.00655 |
S | 688 | A688V | gCt | gTt | 58 | 58 | AY.5 | 0.001198 |
S | 688 | A688V | gCt | gTt | 54 | 54 | AY.4.2 | 0.001171 |
S | 688 | A688V | gCt | gTt | 51 | 51 | AY.75 | 0.002857 |
S | 688 | A688V | gCt | gTt | 49 | 49 | B.1.429 | 0.001153 |
S | 688 | A688V | gCt | gTt | 44 | 44 | P.1.12 | 0.021297 |
S | 688 | A688V | gCt | gTt | 44 | 44 | Q.1 | 0.005558 |
S | 688 | A688V | gCt | gTt | 40 | 40 | AY.69 | 0.007467 |
S | 688 | A688V | gCt | gTt | 39 | 39 | AY.74 | 0.00451 |
S | 688 | A688V | gCt | gTt | 39 | 39 | B.1.221 | 0.00277 |
S | 688 | A688V | gCt | gTt | 38 | 38 | B.1.240 | 0.008191 |
S | 688 | A688V | gCt | gTt | 32 | 32 | B.1.351 | 0.000951 |
S | 688 | A688V | gCt | gTt | 31 | 31 | B.1.177.10 | 0.027217 |
S | 688 | A688V | gCt | gTt | 26 | 26 | B.1.177.86 | 0.00477 |
S | 688 | A688V | gCt | gTt | 26 | 26 | B.1.596 | 0.002266 |
S | 688 | A688V | gCt | gTt | 22 | 22 | AY.29 | 0.000347 |
S | 688 | A688V | gCt | gTt | 22 | 22 | C.37 | 0.002553 |
S | 688 | A688V | gCt | gTt | 22 | 22 | P.2 | 0.004106 |
S | 688 | A688V | gCt | gTt | 21 | 21 | B.1.1.519 | 0.000834 |
S | 688 | A688V | gCt | gTt | 20 | 20 | AY.120 | 0.000744 |
S | 688 | A688V | gCt | gTt | 19 | 19 | AY.33 | 0.001269 |
S | 688 | A688V | gCt | gTt | 19 | 19 | B.1.1.58 | 0.102151 |
S | 688 | A688V | gCt | gTt | 19 | 19 | B.1.1.70 | 0.00648 |
S | 688 | A688V | gCt | gTt | 18 | 18 | B.1.351.2 | 0.005446 |
S | 688 | A688V | gCt | gTt | 18 | 18 | B.1.428 | 0.018367 |
S | 688 | A688V | gCt | gTt | 17 | 17 | AY.42 | 0.000684 |
S | 688 | A688V | gCt | gTt | 16 | 16 | AY.46.6 | 0.001155 |
S | 688 | A688V | gCt | gTt | 16 | 16 | AY.99.2 | 0.001475 |
S | 688 | A688V | gCt | gTt | 16 | 16 | B.1.234 | 0.002111 |
S | 688 | A688V | gCt | gTt | 16 | 16 | B.1.621 | 0.001416 |
S | 688 | A688V | gCt | gTt | 14 | 14 | AA.1 | 0.101449 |
S | 688 | A688V | gCt | gTt | 14 | 14 | AY.47 | 0.000435 |
S | 688 | A688V | gCt | gTt | 14 | 14 | AY.9.1 | 0.001172 |
S | 688 | A688V | gCt | gTt | 14 | 14 | B.1.36 | 0.002043 |
S | 688 | A688V | gCt | gTt | 14 | 14 | B.1.36.27 | 0.010687 |
S | 688 | A688V | gCt | gTt | 14 | 14 | B.1.595 | 0.003653 |
S | 688 | A688V | gCt | gTt | 14 | 14 | R.1 | 0.00126 |
S | 688 | A688V | gCt | gTt | 13 | 13 | AY.26 | 0.000368 |
S | 688 | A688V | gCt | gTt | 13 | 13 | B.1.1.434 | 0.004531 |
S | 688 | A688V | gCt | gTt | 12 | 12 | AY.118 | 0.000752 |
S | 688 | A688V | gCt | gTt | 11 | 11 | AY.9.2 | 0.000404 |
S | 688 | A688V | gCt | gTt | 11 | 11 | B.1.1.28 | 0.003424 |
S | 688 | A688V | gCt | gTt | 10 | 10 | AY.46 | 0.001041 |
S | 688 | A688V | gCt | gTt | 10 | 10 | B.1.1.294 | 0.012658 |
S | 688 | A688V | gCt | gTt | 10 | 10 | B.1.637 | 0.000731 |
S | 688 | A688V | gCt | gTt | 10 | 10 | P.1.15 | 0.002323 |
S | 688 | A688V | gCt | gTt | 10 | 10 | P.1.17 | 0.001618 |
S | 688 | A688V | gCt | gTt | 9 | 9 | AY.14 | 0.000792 |
S | 688 | A688V | gCt | gTt | 9 | 9 | AY.23 | 0.000628 |
S | 688 | A688V | gCt | gTt | 9 | 9 | AY.45 | 0.001095 |
S | 688 | A688V | gCt | gTt | 9 | 9 | AY.5.3 | 0.003036 |
S | 688 | A688V | gCt | gTt | 9 | 9 | AY.98 | 0.000711 |
S | 688 | A688V | gCt | gTt | 9 | 9 | B.1.1.284 | 0.000967 |
S | 688 | A688V | gCt | gTt | 9 | 9 | B.1.1.312 | 0.017208 |
S | 688 | A688V | gCt | gTt | 9 | 9 | B.1.427 | 0.000454 |
S | 688 | A688V | gCt | gTt | 9 | 9 | P.1.1 | 0.002859 |
S | 688 | A688V | gCt | gTt | 8 | 8 | A.2.5 | 0.003992 |
S | 688 | A688V | gCt | gTt | 8 | 8 | AY.113 | 0.001139 |
S | 688 | A688V | gCt | gTt | 8 | 8 | AY.116 | 0.002294 |
S | 688 | A688V | gCt | gTt | 8 | 8 | AY.46.4 | 0.001316 |
S | 688 | A688V | gCt | gTt | 8 | 8 | AY.48 | 0.003721 |
S | 688 | A688V | gCt | gTt | 8 | 8 | B.1.126 | 0.010204 |
S | 688 | A688V | gCt | gTt | 8 | 8 | B.1.177.73 | 0.00453 |
S | 688 | A688V | gCt | gTt | 8 | 8 | P.1.14 | 0.000382 |
S | 688 | A688V | gCt | gTt | 7 | 7 | AY.54 | 0.000667 |
S | 688 | A688V | gCt | gTt | 7 | 7 | AY.6 | 0.000288 |
S | 688 | A688V | gCt | gTt | 7 | 7 | AY.75.1 | 0.001262 |
S | 688 | A688V | gCt | gTt | 7 | 7 | B.1.1.444 | 1 |
S | 688 | A688V | gCt | gTt | 7 | 7 | B.1.177.81 | 0.001325 |
S | 688 | A688V | gCt | gTt | 7 | 7 | B.1.177.82 | 0.003341 |
S | 688 | A688V | gCt | gTt | 7 | 7 | C.36 | 0.006375 |
S | 688 | A688V | gCt | gTt | 7 | 7 | D.2 | 0.000525 |
S | 688 | A688V | gCt | gTt | 6 | 6 | AY.61 | 0.000629 |
S | 688 | A688V | gCt | gTt | 6 | 6 | AY.93 | 0.001638 |
S | 688 | A688V | gCt | gTt | 6 | 6 | B.1.1.214 | 0.000333 |
S | 688 | A688V | gCt | gTt | 6 | 6 | B.1.1.263 | 0.009346 |
S | 688 | A688V | gCt | gTt | 6 | 6 | B.1.1.518 | 0.037975 |
S | 688 | A688V | gCt | gTt | 6 | 6 | B.1.177.74 | 0.090909 |
S | 688 | A688V | gCt | gTt | 6 | 6 | B.1.517 | 0.002562 |
S | 688 | A688V | gCt | gTt | 5 | 5 | AY.116.1 | 0.001557 |
S | 688 | A688V | gCt | gTt | 5 | 5 | AY.13 | 0.000805 |
S | 688 | A688V | gCt | gTt | 5 | 5 | AY.27 | 0.000324 |
S | 688 | A688V | gCt | gTt | 5 | 5 | AY.34 | 0.000485 |
S | 688 | A688V | gCt | gTt | 5 | 5 | AY.39.1 | 0.000198 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.1.317 | 0.002058 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.1.397 | 0.011261 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.177.32 | 0.006748 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.177.4 | 0.001055 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.177.45 | 0.001906 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.468 | 0.028571 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.1.617.1 | 0.000645 |
S | 688 | A688V | gCt | gTt | 5 | 5 | B.4 | 0.011038 |
S | 688 | A688V | gCt | gTt | 4 | 4 | AY.121 | 0.000541 |
S | 688 | A688V | gCt | gTt | 4 | 4 | AY.56 | 0.006421 |
S | 688 | A688V | gCt | gTt | 4 | 4 | AY.65 | 0.002132 |
S | 688 | A688V | gCt | gTt | 4 | 4 | AY.85 | 0.001709 |
S | 688 | A688V | gCt | gTt | 4 | 4 | AY.94 | 0.001771 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B | 0.000511 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.1.157 | 0.003653 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.1.163 | 0.030534 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.1.307 | 0.010127 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.1.311 | 0.001433 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.1.318 | 0.001207 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.160.16 | 0.003717 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.214 | 0.014652 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.36.29 | 0.002069 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.438.1 | 0.000429 |
S | 688 | A688V | gCt | gTt | 4 | 4 | B.1.9.4 | 0.02454 |
S | 688 | A688V | gCt | gTt | 4 | 4 | C.1 | 0.009569 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.106 | 0.001005 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.110 | 0.000338 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.30 | 0.001187 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.38 | 0.001498 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.5.4 | 0.00083 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.59 | 0.001589 |
S | 688 | A688V | gCt | gTt | 3 | 3 | AY.62 | 0.001307 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.1.141 | 0.006036 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.1.231 | 0.009288 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.1.302 | 0.006224 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.1.306 | 0.001315 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.1.33 | 0.001263 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.177.12 | 0.000455 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.177.18 | 0.00348 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.177.85 | 0.016304 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.232 | 0.001612 |
S | 688 | A688V | gCt | gTt | 2 | 3 | B.1.311 | 0.000549 |
S | 688 | A688V | gCT | gTA | 1 | 3 | B.1.311 | 0.000275 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.36.8 | 0.003 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.416 | 0.003807 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.526 | 0.000071 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.530 | 0.021429 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.575 | 0.00091 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.1.609 | 0.001438 |
S | 688 | A688V | gCt | gTt | 3 | 3 | B.40 | 0.001093 |
S | 688 | A688V | gCt | gTt | 3 | 3 | C.35 | 0.002322 |
S | 688 | A688V | gCt | gTt | 3 | 3 | P.1.2 | 0.003468 |
S | 688 | A688V | gCt | gTt | 3 | 3 | P.1.4 | 0.00293 |
S | 688 | A688V | gCt | gTt | 3 | 3 | P.6 | 0.009434 |
S | 688 | A688V | gCt | gTt | 3 | 3 | Q.7 | 0.003333 |
S | 688 | A688V | gCt | gTt | 3 | 3 | S.1 | 0.014851 |
S | 688 | A688V | gCt | gTt | 2 | 2 | A.2.4 | 0.006734 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.109 | 0.001479 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.111 | 0.000366 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.19 | 0.002281 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.3.1 | 0.000171 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.70 | 0.000417 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.84 | 0.000875 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.90 | 0.001369 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.96 | 0.004149 |
S | 688 | A688V | gCt | gTt | 2 | 2 | AY.99 | 0.002099 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.1 | 0.000653 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.10 | 0.00223 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.144 | 0.057143 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.15 | 0.027027 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.159 | 0.009346 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.207 | 0.002364 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.326 | 0.003521 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.351 | 0.005587 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.37 | 0.000386 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.377 | 0.002762 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.417 | 0.005405 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.432 | 0.002532 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.448 | 0.004065 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.1.56 | 0.035714 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.158 | 0.047619 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.177.56 | 0.001335 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.177.9 | 0.002663 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.239 | 0.002442 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.279 | 0.001027 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.298 | 0.004228 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.36.31 | 0.003503 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.466.2 | 0.000782 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.499 | 0.002101 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.521 | 0.00995 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.525 | 0.000226 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.561 | 0.000794 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.577 | 0.001375 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.1.9 | 0.012346 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.39 | 0.004662 |
S | 688 | A688V | gCt | gTt | 2 | 2 | B.6.6 | 0.001778 |
S | 688 | A688V | gCt | gTt | 2 | 2 | C.17 | 0.111111 |
S | 688 | A688V | gCt | gTt | 2 | 2 | C.38 | 0.016129 |
S | 688 | A688V | gCt | gTt | 2 | 2 | C.7 | 0.068966 |
S | 688 | A688V | gCt | gTt | 2 | 2 | K.3 | 0.012346 |
S | 688 | A688V | gCt | gTt | 1 | 1 | A | 0.000387 |
S | 688 | A688V | gCt | gTt | 1 | 1 | A.2 | 0.000662 |
S | 688 | A688V | gCt | gTt | 1 | 1 | A.2.3 | 0.004739 |
S | 688 | A688V | gCt | gTt | 1 | 1 | A.2.5.1 | 0.004808 |
S | 688 | A688V | gCt | gTt | 1 | 1 | A.23.1 | 0.000704 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AM.4 | 0.003571 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AU.2 | 0.002421 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AV.1 | 0.005051 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.1 | 0.000396 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.108 | 0.001103 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.120.2 | 0.001285 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.23.1 | 0.000417 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.4.5 | 0.000107 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.46.5 | 0.000198 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.51 | 0.000909 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.63 | 0.000387 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.66 | 0.00107 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.67 | 0.000464 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.73 | 0.000665 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
S | 688 | A688V | gCt | gTt | 1 | 1 | AZ.1 | 0.000867 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.170 | 0.001247 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.189 | 0.001513 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.216 | 0.00089 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.221 | 0.010101 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.222 | 0.000204 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.254 | 0.011236 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.258 | 0.003257 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.299 | 0.012195 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.30 | 0.076923 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.309 | 0.005848 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.369 | 0.000446 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.402 | 0.011111 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.1.51 | 0.001718 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.111 | 0.001175 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.128 | 0.000635 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.140 | 0.018868 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.17 | 0.000821 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.21 | 0.000076 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.27 | 0.009434 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.50 | 0.004695 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.51 | 0.004566 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.52 | 0.001757 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.69 | 0.001484 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.177.87 | 0.000728 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.182 | 0.007246 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.190 | 0.01 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.199 | 0.004132 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.235 | 0.002519 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.236 | 0.002053 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.258.10 | 0.011364 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.258.16 | 0.001637 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.258.24 | 0.010753 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.289 | 0.00266 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.315 | 0.006061 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.326 | 0.007576 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.356 | 0.001727 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.36.10 | 0.004785 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.36.12 | 0.009615 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.36.38 | 0.001642 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.361 | 0.001289 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.375 | 0.00082 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.399 | 0.001934 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.404 | 0.001302 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.429.1 | 0.012048 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.436 | 0.001029 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.448 | 0.002625 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.452 | 0.013699 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.466.1 | 0.007194 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.471 | 0.002732 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.497 | 0.000315 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.508 | 0.025641 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.509 | 0.000866 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.533 | 0.009615 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.538 | 0.008065 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.541 | 0.004425 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.546 | 0.003704 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.560 | 0.00463 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.568 | 0.001111 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.574 | 0.002151 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.576 | 0.000907 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.604 | 0.017241 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.619 | 0.000871 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.639 | 0.021739 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.1.93 | 0.000934 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.3.1 | 0.001658 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.56 | 0.028571 |
S | 688 | A688V | gCt | gTt | 1 | 1 | B.58 | 0.010204 |
S | 688 | A688V | gCt | gTt | 1 | 1 | C.1.2 | 0.004255 |
S | 688 | A688V | gCt | gTt | 1 | 1 | C.12 | 0.007194 |
S | 688 | A688V | gCt | gTt | 1 | 1 | C.18 | 0.002591 |
S | 688 | A688V | gCt | gTt | 1 | 1 | C.36.3.1 | 0.002717 |
S | 688 | A688V | gCt | gTt | 1 | 1 | C.8 | 0.004464 |
S | 688 | A688V | gCt | gTt | 1 | 1 | N.9 | 0.005952 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.10 | 0.000269 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.10.1 | 0.00813 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.13 | 0.000898 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.16 | 0.000374 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.7 | 0.000319 |
S | 688 | A688V | gCt | gTt | 1 | 1 | P.1.8 | 0.004785 |
S | 688 | A688V | gCt | gTt | 1 | 1 | Q.4 | 0.000455 |
S | 688 | A688V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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