CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A668A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S668A668AsyngcAgcT7665820.75979123564-23566
S668A668AsyngcAgcG7661270.16579623564-23566
S668A668AsyngcAgcC766570.074412523564-23566

Details of the mutation A668A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S668A668AgcAgcT582766All0.000111
S668A668AgcAgcG127766All0.000024
S668A668AgcAgcC57766All0.000011
S668A668AgcAgcT347347B.1.20.003055
S668A668AgcAgcT5959B.1.5631
S668A668AgcAgcT4246AY.440.000256
S668A668AgcAgcG346AY.440.000018
S668A668AgcAgcC146AY.440.000006
S668A668AgcAgcT1937B.10.000174
S668A668AgcAgcC937B.10.000082
S668A668AgcAgcG937B.10.000082
S668A668AgcAgcT1531B.1.1.70.000013
S668A668AgcAgcG1031B.1.1.70.000009
S668A668AgcAgcC631B.1.1.70.000005
S668A668AgcAgcG1024AY.40.000016
S668A668AgcAgcC924AY.40.000014
S668A668AgcAgcT524AY.40.000008
S668A668AgcAgcG2424B.1.36.180.010084
S668A668AgcAgcT1222B.1.617.20.000045
S668A668AgcAgcG522B.1.617.20.000019
S668A668AgcAgcC522B.1.617.20.000019
S668A668AgcAgcG1718AY.30.000169
S668A668AgcAgcT118AY.30.00001
S668A668AgcAgcT712AY.430.000031
S668A668AgcAgcG312AY.430.000013
S668A668AgcAgcC212AY.430.000009
S668A668AgcAgcT1111AY.300.004353
S668A668AgcAgcT99B.1.1.700.00307
S668A668AgcAgcC68B.1.1770.000079
S668A668AgcAgcT18B.1.1770.000013
S668A668AgcAgcG18B.1.1770.000013
S668A668AgcAgcT88B.1.5130.111111
S668A668AgcAgcT88C.1.20.034043
S668A668AgcAgcT56AY.1020.000133
S668A668AgcAgcG16AY.1020.000027
S668A668AgcAgcG56AY.50.000103
S668A668AgcAgcT16AY.50.000021
S668A668AgcAgcT35AY.1030.000019
S668A668AgcAgcG15AY.1030.000006
S668A668AgcAgcC15AY.1030.000006
S668A668AgcAgcT55B.1.1.3750.059524
S668A668AgcAgcG55B.1.5170.002135
S668A668AgcAgcT45B.1.5960.000349
S668A668AgcAgcG15B.1.5960.000087
S668A668AgcAgcG44AY.1130.00057
S668A668AgcAgcC44B.1.1600.000125
S668A668AgcAgcG44B.1.3510.000119
S668A668AgcAgcG33AY.540.000286
S668A668AgcAgcC33AY.980.000237
S668A668AgcAgcC23B.1.10.000036
S668A668AgcAgcG13B.1.10.000018
S668A668AgcAgcT22AY.200.000078
S668A668AgcAgcT12AY.250.000006
S668A668AgcAgcG12AY.250.000006
S668A668AgcAgcC22AY.290.000032
S668A668AgcAgcG22AY.350.000466
S668A668AgcAgcC22B.1.1.1610.007067
S668A668AgcAgcT22B.1.258.170.000208
S668A668AgcAgcT22B.1.4290.000047
S668A668AgcAgcT22B.1.6210.000177
S668A668AgcAgcG22C.110.021277
S668A668AgcAgcT22C.36.3.10.005435
S668A668AgcAgcT11AY.1000.000046
S668A668AgcAgcG11AY.1060.000335
S668A668AgcAgcG11AY.1180.000063
S668A668AgcAgcG11AY.230.00007
S668A668AgcAgcG11AY.34.10.00051
S668A668AgcAgcT11AY.390.000025
S668A668AgcAgcG11AY.4.20.000022
S668A668AgcAgcG11AY.400.000964
S668A668AgcAgcT11AY.450.000122
S668A668AgcAgcG11AY.520.000814
S668A668AgcAgcT11AY.750.000056
S668A668AgcAgcG11AY.75.10.00018
S668A668AgcAgcC11B0.000128
S668A668AgcAgcC11B.1.1.4450.037037
S668A668AgcAgcG11B.1.1630.02439
S668A668AgcAgcG11B.1.177.70.000165
S668A668AgcAgcG11B.1.177.820.000477
S668A668AgcAgcC11B.1.220.001318
S668A668AgcAgcC11B.1.2210.000071
S668A668AgcAgcG11B.1.2400.000216
S668A668AgcAgcC11B.1.2580.000067
S668A668AgcAgcG11B.1.36.170.000494
S668A668AgcAgcG11B.1.36.350.002604
S668A668AgcAgcT11B.1.3620.001541
S668A668AgcAgcT11B.1.4270.00005
S668A668AgcAgcT11B.1.466.20.000391
S668A668AgcAgcT11B.1.5750.000303
S668A668AgcAgcG11D.20.000075
S668A668AgcAgcT11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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